Wall clock time and date at job start Tue Mar 31 2020 01:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34475 * 125.56559 * 2 1 4 4 C 1.46704 * 106.33879 * 180.02562 * 3 2 1 5 5 C 1.47191 * 126.94564 * 180.02562 * 4 3 2 6 6 O 1.21653 * 119.99848 * 204.95759 * 5 4 3 7 7 N 1.34777 * 120.00040 * 24.95444 * 5 4 3 8 8 C 1.36971 * 119.99518 * 5.67789 * 7 5 4 9 9 H 1.07993 * 120.00676 * 34.72961 * 8 7 5 10 10 C 1.38977 * 119.99529 * 214.72374 * 8 7 5 11 11 N 1.31411 * 119.99981 * 335.40839 * 10 8 7 12 12 Si 1.86806 * 119.99801 * 155.41294 * 10 8 7 13 13 H 1.48498 * 109.46853 * 95.00080 * 12 10 8 14 14 H 1.48491 * 109.46811 * 215.00006 * 12 10 8 15 15 H 1.48496 * 109.47033 * 335.00223 * 12 10 8 16 16 C 1.46493 * 119.99788 * 185.67439 * 7 5 4 17 17 C 1.50700 * 109.47087 * 84.71075 * 16 7 5 18 18 O 1.20821 * 120.00222 * 359.97438 * 17 16 7 19 19 O 1.34230 * 119.99893 * 179.97438 * 17 16 7 20 20 C 1.36844 * 106.11027 * 0.26831 * 4 3 2 21 21 C 1.50700 * 125.81503 * 179.73700 * 20 4 3 22 22 N 1.34693 * 108.37633 * 359.57000 * 20 4 3 23 23 C 1.46497 * 124.84838 * 180.21333 * 22 20 4 24 24 H 1.09004 * 109.47261 * 89.96740 * 1 2 3 25 25 H 1.08997 * 109.47779 * 209.97415 * 1 2 3 26 26 H 1.08999 * 109.46984 * 329.97769 * 1 2 3 27 27 H 1.07994 * 126.83379 * 0.02562 * 3 2 1 28 28 H 0.97004 * 120.00383 * 179.97438 * 11 10 8 29 29 H 1.09008 * 109.46965 * 204.70701 * 16 7 5 30 30 H 1.08998 * 109.47557 * 324.70552 * 16 7 5 31 31 H 0.96701 * 116.99973 * 179.97438 * 19 17 16 32 32 H 1.09000 * 109.47197 * 90.01476 * 21 20 4 33 33 H 1.08999 * 109.47339 * 210.01805 * 21 20 4 34 34 H 1.08997 * 109.46963 * 330.02234 * 21 20 4 35 35 H 1.09003 * 109.47130 * 270.29089 * 23 22 20 36 36 H 1.08997 * 109.47696 * 30.29556 * 23 22 20 37 37 H 1.08998 * 109.46906 * 150.29722 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2891 1.0939 0.0000 4 6 3.6743 0.6108 -0.0006 5 6 4.8971 1.4302 -0.0003 6 8 5.9340 0.9756 -0.4454 7 7 4.8679 2.6841 0.4930 8 6 3.7335 3.1552 1.0991 9 1 3.1139 2.4874 1.6791 10 6 3.3800 4.4929 0.9679 11 7 4.3012 5.3935 0.7088 12 14 1.5954 5.0105 1.1602 13 1 1.3557 5.4511 2.5579 14 1 1.3022 6.1308 0.2307 15 1 0.7099 3.8609 0.8448 16 6 6.0493 3.5430 0.3808 17 6 6.0518 4.2206 -0.9652 18 8 5.1587 4.0076 -1.7505 19 8 7.0464 5.0608 -1.2917 20 6 3.5999 -0.7556 -0.0071 21 6 4.7722 -1.7026 -0.0158 22 7 2.3005 -1.1102 -0.0007 23 6 1.8094 -2.4904 -0.0002 24 1 -0.3634 0.0006 -1.0277 25 1 -0.3634 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 1.9626 2.1233 0.0004 28 1 4.0545 6.3272 0.6168 29 1 6.0260 4.2974 1.1674 30 1 6.9498 2.9376 0.4846 31 1 7.0050 5.4713 -2.1663 32 1 5.0582 -1.9362 1.0098 33 1 4.4940 -2.6205 -0.5335 34 1 5.6124 -1.2359 -0.5298 35 1 1.6870 -2.8329 -1.0277 36 1 2.5262 -3.1310 0.5134 37 1 0.8494 -2.5341 0.5141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738319472.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:54 Heat of formation + Delta-G solvation = -66.133394 kcal Electronic energy + Delta-G solvation = -22918.779025 eV Core-core repulsion = 19469.722440 eV Total energy + Delta-G solvation = -3449.056585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73828 -39.11834 -37.70085 -35.05897 -34.43802 -32.34803 -32.04366 -31.45122 -28.73309 -28.08186 -25.81328 -24.93197 -23.74311 -21.42689 -20.22763 -19.16643 -18.31687 -16.94637 -16.47150 -15.93872 -15.50555 -15.22745 -15.16225 -14.33958 -14.22269 -14.11029 -13.39775 -13.27672 -12.91700 -12.70160 -12.68869 -12.45607 -12.06136 -11.94351 -11.84593 -11.71636 -11.47945 -11.22372 -11.18019 -10.90828 -10.74624 -10.51075 -10.26280 -10.22334 -9.39834 -8.80287 -8.53568 -7.74392 -7.71491 -7.24077 -6.45803 -3.92272 2.59028 3.13801 3.20779 3.27301 3.30888 3.35948 3.69360 4.08274 4.25487 4.57848 4.90648 5.03469 5.12923 5.23570 5.24508 5.41461 5.45855 5.59864 5.70534 5.83631 6.03277 6.10507 6.34187 6.46806 6.47923 6.58948 6.70087 6.83324 6.92233 7.14169 7.50312 7.64571 7.67769 7.83055 7.87284 7.92862 8.43230 9.11587 9.21406 9.55440 9.96569 10.62217 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016379 B = 0.007968 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.092827 B = 3513.254684 C = 4825.768015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.027 4.027 3 C -0.127 4.127 4 C -0.180 4.180 5 C 0.553 3.447 6 O -0.608 6.608 7 N -0.430 5.430 8 C -0.328 4.328 9 H 0.105 0.895 10 C 0.054 3.946 11 N -0.870 5.870 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.283 1.283 15 H -0.263 1.263 16 C 0.148 3.852 17 C 0.494 3.506 18 O -0.519 6.519 19 O -0.533 6.533 20 C 0.063 3.937 21 C -0.086 4.086 22 N -0.450 5.450 23 C 0.074 3.926 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.156 0.844 28 H 0.271 0.729 29 H 0.139 0.861 30 H 0.077 0.923 31 H 0.388 0.612 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 -8.742 0.572 9.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.133 4.133 3 C -0.151 4.151 4 C -0.190 4.190 5 C 0.344 3.656 6 O -0.496 6.496 7 N -0.148 5.148 8 C -0.455 4.455 9 H 0.122 0.878 10 C -0.151 4.151 11 N -0.508 5.508 12 Si 0.732 3.268 13 H -0.206 1.206 14 H -0.208 1.208 15 H -0.188 1.188 16 C 0.023 3.977 17 C 0.336 3.664 18 O -0.406 6.406 19 O -0.343 6.343 20 C -0.051 4.051 21 C -0.143 4.143 22 N -0.129 5.129 23 C -0.068 4.068 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.173 0.827 28 H 0.082 0.918 29 H 0.157 0.843 30 H 0.095 0.905 31 H 0.244 0.756 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.173 -9.296 0.534 10.204 hybrid contribution -1.149 0.889 -0.570 1.560 sum -5.322 -8.407 -0.036 9.950 Atomic orbital electron populations 1.20196 0.88842 1.02357 1.01772 1.20148 0.92972 0.85860 1.14317 1.22312 0.90853 0.97822 1.04117 1.20109 0.93789 0.91079 1.13983 1.17337 0.86700 0.82514 0.79028 1.90556 1.32948 1.73796 1.52269 1.43038 1.11727 1.10268 1.49788 1.19531 1.00784 0.94711 1.30472 0.87755 1.25348 0.98882 0.95770 0.95125 1.69807 1.32725 1.02221 1.46050 0.86275 0.83994 0.78702 0.77837 1.20565 1.20841 1.18765 1.20668 0.89626 0.94747 0.92693 1.24051 0.77486 0.75195 0.89653 1.90570 1.36354 1.61763 1.51907 1.84551 1.50850 1.58736 1.40164 1.20110 0.84108 0.94232 1.06681 1.20430 0.95504 0.96201 1.02190 1.43204 1.05131 1.05474 1.59107 1.21869 1.00840 0.81622 1.02497 0.91906 0.92652 0.90524 0.82674 0.91847 0.84339 0.90522 0.75576 0.91761 0.92900 0.88048 0.91671 0.90367 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.06 36.00 0.36 -0.63 16 2 C -0.03 -0.48 6.85 -81.86 -0.56 -1.04 16 3 C -0.13 -2.78 8.79 -37.49 -0.33 -3.11 16 4 C -0.18 -4.22 5.77 -103.35 -0.60 -4.82 16 5 C 0.55 14.51 7.35 -12.62 -0.09 14.42 16 6 O -0.61 -16.59 14.71 5.23 0.08 -16.51 16 7 N -0.43 -11.31 2.15 -117.40 -0.25 -11.56 16 8 C -0.33 -8.47 6.77 -14.98 -0.10 -8.57 16 9 H 0.10 2.64 6.34 -52.49 -0.33 2.31 16 10 C 0.05 1.37 5.44 -17.46 -0.09 1.28 16 11 N -0.87 -22.68 9.10 55.50 0.51 -22.18 16 12 Si 0.91 19.86 28.98 -169.99 -4.93 14.93 16 13 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.26 -5.53 6.82 56.52 0.39 -5.14 16 16 C 0.15 3.68 5.19 -5.20 -0.03 3.65 16 17 C 0.49 12.40 6.62 36.01 0.24 12.64 16 18 O -0.52 -14.69 16.99 -18.75 -0.32 -15.01 16 19 O -0.53 -11.00 13.42 -39.26 -0.53 -11.53 16 20 C 0.06 1.23 6.89 -81.84 -0.56 0.67 16 21 C -0.09 -1.42 9.52 36.01 0.34 -1.08 16 22 N -0.45 -7.53 3.09 -115.25 -0.36 -7.88 16 23 C 0.07 0.82 10.39 59.85 0.62 1.44 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.60 6.94 -51.93 -0.36 0.24 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.16 3.62 5.59 -52.49 -0.29 3.32 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.14 3.45 6.38 -51.92 -0.33 3.12 16 30 H 0.08 1.80 7.51 -51.93 -0.39 1.41 16 31 H 0.39 6.24 9.10 45.56 0.41 6.65 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.70 7.60 -51.93 -0.39 0.30 16 34 H 0.10 1.94 6.34 -51.93 -0.33 1.61 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.75 7.51 -51.93 -0.39 0.36 16 37 H 0.08 0.71 6.90 -51.93 -0.36 0.35 16 LS Contribution 310.22 15.07 4.67 4.67 Total: -1.00 -33.53 310.22 -5.53 -39.06 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -3.61 Total: 11.17 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: -0.80 Total: 14.84 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: -0.10 Total: -41.62 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -0.77 Total: -43.05 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.93 Total: 14.93 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.53 -5.53 -39.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738319472.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.076 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds