Wall clock time and date at job start Tue Mar 31 2020 01:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34475 * 125.56559 * 2 1 4 4 C 1.46704 * 106.33879 * 180.02562 * 3 2 1 5 5 C 1.47191 * 126.94564 * 180.02562 * 4 3 2 6 6 O 1.21653 * 119.99848 * 204.95759 * 5 4 3 7 7 N 1.34777 * 120.00040 * 24.95444 * 5 4 3 8 8 C 1.36971 * 119.99518 * 5.67789 * 7 5 4 9 9 H 1.07993 * 120.00676 * 34.72961 * 8 7 5 10 10 C 1.38977 * 119.99529 * 214.72374 * 8 7 5 11 11 N 1.31411 * 119.99981 * 335.40839 * 10 8 7 12 12 Si 1.86806 * 119.99801 * 155.41294 * 10 8 7 13 13 H 1.48498 * 109.46853 * 95.00080 * 12 10 8 14 14 H 1.48491 * 109.46811 * 215.00006 * 12 10 8 15 15 H 1.48496 * 109.47033 * 335.00223 * 12 10 8 16 16 C 1.46493 * 119.99788 * 185.67439 * 7 5 4 17 17 C 1.50700 * 109.47087 * 84.71075 * 16 7 5 18 18 O 1.20821 * 120.00222 * 359.97438 * 17 16 7 19 19 O 1.34230 * 119.99893 * 179.97438 * 17 16 7 20 20 C 1.36844 * 106.11027 * 0.26831 * 4 3 2 21 21 C 1.50700 * 125.81503 * 179.73700 * 20 4 3 22 22 N 1.34693 * 108.37633 * 359.57000 * 20 4 3 23 23 C 1.46497 * 124.84838 * 180.21333 * 22 20 4 24 24 H 1.09004 * 109.47261 * 89.96740 * 1 2 3 25 25 H 1.08997 * 109.47779 * 209.97415 * 1 2 3 26 26 H 1.08999 * 109.46984 * 329.97769 * 1 2 3 27 27 H 1.07994 * 126.83379 * 0.02562 * 3 2 1 28 28 H 0.97004 * 120.00383 * 179.97438 * 11 10 8 29 29 H 1.09008 * 109.46965 * 204.70701 * 16 7 5 30 30 H 1.08998 * 109.47557 * 324.70552 * 16 7 5 31 31 H 0.96701 * 116.99973 * 179.97438 * 19 17 16 32 32 H 1.09000 * 109.47197 * 90.01476 * 21 20 4 33 33 H 1.08999 * 109.47339 * 210.01805 * 21 20 4 34 34 H 1.08997 * 109.46963 * 330.02234 * 21 20 4 35 35 H 1.09003 * 109.47130 * 270.29089 * 23 22 20 36 36 H 1.08997 * 109.47696 * 30.29556 * 23 22 20 37 37 H 1.08998 * 109.46906 * 150.29722 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2891 1.0939 0.0000 4 6 3.6743 0.6108 -0.0006 5 6 4.8971 1.4302 -0.0003 6 8 5.9340 0.9756 -0.4454 7 7 4.8679 2.6841 0.4930 8 6 3.7335 3.1552 1.0991 9 1 3.1139 2.4874 1.6791 10 6 3.3800 4.4929 0.9679 11 7 4.3012 5.3935 0.7088 12 14 1.5954 5.0105 1.1602 13 1 1.3557 5.4511 2.5579 14 1 1.3022 6.1308 0.2307 15 1 0.7099 3.8609 0.8448 16 6 6.0493 3.5430 0.3808 17 6 6.0518 4.2206 -0.9652 18 8 5.1587 4.0076 -1.7505 19 8 7.0464 5.0608 -1.2917 20 6 3.5999 -0.7556 -0.0071 21 6 4.7722 -1.7026 -0.0158 22 7 2.3005 -1.1102 -0.0007 23 6 1.8094 -2.4904 -0.0002 24 1 -0.3634 0.0006 -1.0277 25 1 -0.3634 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 1.9626 2.1233 0.0004 28 1 4.0545 6.3272 0.6168 29 1 6.0260 4.2974 1.1674 30 1 6.9498 2.9376 0.4846 31 1 7.0050 5.4713 -2.1663 32 1 5.0582 -1.9362 1.0098 33 1 4.4940 -2.6205 -0.5335 34 1 5.6124 -1.2359 -0.5298 35 1 1.6870 -2.8329 -1.0277 36 1 2.5262 -3.1310 0.5134 37 1 0.8494 -2.5341 0.5141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738319472.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:53 Heat of formation + Delta-G solvation = -88.824280 kcal Electronic energy + Delta-G solvation = -22919.762975 eV Core-core repulsion = 19469.722440 eV Total energy + Delta-G solvation = -3450.040535 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.18749 -41.05903 -39.60954 -36.97744 -36.41454 -33.69968 -33.40559 -33.36050 -30.09618 -29.75927 -27.25390 -26.66293 -25.25940 -23.16336 -21.91110 -20.94091 -19.94533 -18.88789 -18.10172 -17.73800 -17.38441 -16.75385 -16.47143 -16.23722 -16.09587 -15.82369 -15.07290 -14.79170 -14.25874 -14.07124 -13.97427 -13.78943 -13.64369 -13.49619 -13.29828 -13.10916 -13.07488 -12.90701 -12.74844 -12.45367 -12.32795 -12.20942 -12.16365 -11.96286 -11.44264 -10.75251 -10.47908 -9.73121 -9.21787 -8.71329 -8.40060 -5.90475 1.00429 1.39619 1.47446 1.56836 1.65112 1.70849 2.08426 2.28070 2.43458 2.71397 3.11912 3.24692 3.99322 4.08690 4.13088 4.38616 4.44790 4.47654 4.55223 4.71283 4.74018 4.78600 4.84782 4.86322 4.97880 5.02039 5.12185 5.18079 5.34417 5.52514 5.55774 5.85483 5.92083 6.10565 6.33724 6.47296 6.63163 7.14627 7.33755 7.59892 8.00992 8.67766 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016379 B = 0.007968 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.092827 B = 3513.254684 C = 4825.768015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.006 4.006 3 C -0.171 4.171 4 C -0.238 4.238 5 C 0.539 3.461 6 O -0.634 6.634 7 N -0.443 5.443 8 C -0.334 4.334 9 H 0.103 0.897 10 C 0.012 3.988 11 N -0.891 5.891 12 Si 0.965 3.035 13 H -0.267 1.267 14 H -0.291 1.291 15 H -0.251 1.251 16 C 0.145 3.855 17 C 0.499 3.501 18 O -0.558 6.558 19 O -0.518 6.518 20 C 0.070 3.930 21 C -0.081 4.081 22 N -0.439 5.439 23 C 0.061 3.939 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.131 0.869 28 H 0.270 0.730 29 H 0.135 0.865 30 H 0.083 0.917 31 H 0.412 0.588 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.530 -10.911 0.824 12.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.114 4.114 3 C -0.195 4.195 4 C -0.247 4.247 5 C 0.332 3.668 6 O -0.524 6.524 7 N -0.161 5.161 8 C -0.461 4.461 9 H 0.120 0.880 10 C -0.191 4.191 11 N -0.530 5.530 12 Si 0.789 3.211 13 H -0.192 1.192 14 H -0.218 1.218 15 H -0.175 1.175 16 C 0.020 3.980 17 C 0.342 3.658 18 O -0.448 6.448 19 O -0.330 6.330 20 C -0.047 4.047 21 C -0.138 4.138 22 N -0.117 5.117 23 C -0.078 4.078 24 H 0.097 0.903 25 H 0.109 0.891 26 H 0.094 0.906 27 H 0.148 0.852 28 H 0.080 0.920 29 H 0.153 0.847 30 H 0.100 0.900 31 H 0.271 0.729 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.383 -11.475 0.797 13.155 hybrid contribution -0.411 1.497 -0.682 1.696 sum -6.794 -9.977 0.115 12.071 Atomic orbital electron populations 1.20342 0.85225 1.04089 1.03310 1.20659 0.94920 0.85100 1.10722 1.22128 0.91135 0.98158 1.08043 1.20176 0.93354 0.92918 1.18265 1.17936 0.87630 0.82719 0.78508 1.90500 1.34124 1.74310 1.53485 1.43242 1.12126 1.10658 1.50033 1.19614 1.00894 0.94850 1.30757 0.87979 1.26083 1.02309 0.95643 0.95030 1.69879 1.33986 1.02190 1.46915 0.85361 0.79629 0.78149 0.78003 1.19248 1.21765 1.17506 1.20685 0.89833 0.94732 0.92778 1.24017 0.77370 0.75118 0.89258 1.90545 1.38016 1.63249 1.52981 1.84473 1.48926 1.57696 1.41867 1.20422 0.86216 0.93403 1.04677 1.20421 0.93348 0.96777 1.03238 1.43541 1.03898 1.07603 1.56639 1.22363 1.02634 0.78247 1.04577 0.90325 0.89118 0.90623 0.85165 0.92015 0.84742 0.89954 0.72928 0.90287 0.88899 0.91161 0.89695 0.88378 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.66 10.06 71.23 0.72 -0.95 16 2 C -0.01 -0.19 6.85 40.98 0.28 0.09 16 3 C -0.17 -7.58 8.79 23.62 0.21 -7.37 16 4 C -0.24 -11.43 5.77 -19.04 -0.11 -11.54 16 5 C 0.54 29.58 7.35 86.59 0.64 30.22 16 6 O -0.63 -36.21 14.71 -4.20 -0.06 -36.27 16 7 N -0.44 -24.34 2.15 -643.56 -1.39 -25.72 16 8 C -0.33 -17.92 6.77 84.07 0.57 -17.35 16 9 H 0.10 5.39 6.34 -2.91 -0.02 5.37 16 10 C 0.01 0.61 5.44 84.93 0.46 1.07 16 11 N -0.89 -47.63 9.10 21.67 0.20 -47.44 16 12 Si 0.96 41.36 28.98 68.60 1.99 43.34 16 13 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 14 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 15 H -0.25 -10.18 6.82 99.48 0.68 -9.50 16 16 C 0.15 7.51 5.19 85.63 0.44 7.96 16 17 C 0.50 25.73 6.62 71.24 0.47 26.21 16 18 O -0.56 -32.64 16.99 21.98 0.37 -32.27 16 19 O -0.52 -21.42 13.42 -51.41 -0.69 -22.11 16 20 C 0.07 2.67 6.89 41.79 0.29 2.95 16 21 C -0.08 -2.54 9.52 71.24 0.68 -1.86 16 22 N -0.44 -13.38 3.09 -518.54 -1.60 -14.98 16 23 C 0.06 1.04 10.39 127.77 1.33 2.37 16 24 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.09 1.46 6.94 -2.39 -0.02 1.44 16 26 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.13 6.30 5.59 -2.91 -0.02 6.28 16 28 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 29 H 0.14 6.99 6.38 -2.38 -0.02 6.98 16 30 H 0.08 4.06 7.51 -2.39 -0.02 4.05 16 31 H 0.41 12.96 9.10 -74.06 -0.67 12.29 16 32 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.09 2.13 7.60 -2.39 -0.02 2.11 16 34 H 0.07 2.71 6.34 -2.39 -0.02 2.69 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 36 H 0.10 1.33 7.51 -2.39 -0.02 1.31 16 37 H 0.11 1.26 6.90 -2.39 -0.02 1.25 16 Total: -1.00 -76.97 310.22 5.21 -71.76 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 0.42 Total: 31.89 kcal Atomic # 6 Polarization: 25.82 SS G_CDS: 5.97 Total: 31.79 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -2.79 Total: -88.14 kcal Atomic # 8 Polarization: -90.27 SS G_CDS: -0.38 Total: -90.65 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.99 Total: 43.34 kcal Total: -76.97 5.21 -71.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738319472.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.061 kcal (2) G-P(sol) polarization free energy of solvation -76.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds