Wall clock time and date at job start Tue Mar 31 2020 01:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99937 * 2 1 4 4 H 1.48505 * 109.47127 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47193 * 119.99566 * 3 2 1 6 6 H 1.48493 * 109.47058 * 240.00046 * 3 2 1 7 7 C 1.38804 * 120.00374 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00226 * 199.71959 * 7 2 1 9 9 N 1.36938 * 119.99938 * 19.72185 * 7 2 1 10 10 C 1.46504 * 119.99826 * 36.37466 * 9 7 2 11 11 N 1.46498 * 109.46934 * 90.00364 * 10 9 7 12 12 N 1.40165 * 126.35625 * 90.02459 * 11 10 9 13 13 C 1.29416 * 108.13900 * 179.97438 * 12 11 10 14 14 N 1.37325 * 108.83059 * 0.02562 * 13 12 11 15 15 C 1.46500 * 125.82774 * 180.02562 * 14 13 12 16 16 C 1.52998 * 117.49942 * 8.71597 * 15 14 13 17 17 C 1.52998 * 117.49691 * 300.05371 * 15 14 13 18 18 C 1.34816 * 108.34265 * 359.73251 * 14 13 12 19 19 S 1.71195 * 126.30461 * 180.30542 * 18 14 13 20 20 C 1.46494 * 120.00037 * 216.37534 * 9 7 2 21 21 C 1.52996 * 117.50108 * 12.80329 * 20 9 7 22 22 C 1.53002 * 60.00155 * 252.50641 * 21 20 9 23 23 H 0.97007 * 120.00098 * 355.54460 * 1 2 3 24 24 H 1.09007 * 109.46864 * 210.00132 * 10 9 7 25 25 H 1.08997 * 109.47112 * 330.00090 * 10 9 7 26 26 H 1.07997 * 125.58983 * 179.97438 * 13 12 11 27 27 H 1.09005 * 115.54868 * 154.38798 * 15 14 13 28 28 H 1.09000 * 117.50120 * 0.02562 * 16 15 14 29 29 H 1.09005 * 117.49834 * 145.02649 * 16 15 14 30 30 H 1.09000 * 117.50469 * 214.98000 * 17 15 14 31 31 H 1.09003 * 117.50068 * 359.97438 * 17 15 14 32 32 H 1.09007 * 115.55095 * 158.50808 * 20 9 7 33 33 H 1.09003 * 117.49923 * 359.97438 * 21 20 9 34 34 H 1.09003 * 117.50057 * 145.01654 * 21 20 9 35 35 H 1.08992 * 117.50000 * 252.50780 * 22 21 20 36 36 H 1.08997 * 117.51251 * 107.47369 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7466 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0428 -1.2293 0.3161 9 7 1.3859 -2.3534 -0.3991 10 6 0.4130 -2.3169 -1.4939 11 7 1.1024 -2.5392 -2.7673 12 7 1.3313 -3.7773 -3.3832 13 6 1.9674 -3.5651 -4.4902 14 7 2.1716 -2.2146 -4.6322 15 6 2.8552 -1.5639 -5.7527 16 6 3.2116 -2.4304 -6.9622 17 6 4.3123 -1.9514 -6.0124 18 6 1.6299 -1.5893 -3.5677 19 16 1.6161 0.0986 -3.2825 20 6 1.6907 -3.6215 0.2680 21 6 2.4728 -3.5586 1.5815 22 6 3.1547 -4.0644 0.3086 23 1 -0.4851 0.8376 0.0653 24 1 -0.3327 -3.0976 -1.3434 25 1 -0.0779 -1.3440 -1.5114 26 1 2.2862 -4.3256 -5.1875 27 1 2.5681 -0.5294 -5.9417 28 1 2.9370 -3.4846 -6.9245 29 1 3.1595 -1.9659 -7.9470 30 1 4.9839 -1.1721 -6.3726 31 1 4.7625 -2.6902 -5.3493 32 1 0.9324 -4.3984 0.1701 33 1 2.7609 -2.5737 1.9491 34 1 2.2290 -4.2941 2.3481 35 1 3.3595 -5.1326 0.2378 36 1 3.8909 -3.4123 -0.1613 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745436510.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:43 Heat of formation + Delta-G solvation = 181.416327 kcal Electronic energy + Delta-G solvation = -20357.613123 eV Core-core repulsion = 17394.336721 eV Total energy + Delta-G solvation = -2963.276401 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.94011 -37.68210 -37.05065 -34.08722 -32.50916 -31.65582 -30.08753 -26.17998 -24.03428 -23.75092 -22.69909 -22.09783 -21.49949 -20.88082 -19.99041 -17.94961 -16.80279 -15.96232 -15.65437 -15.58045 -15.34938 -14.76139 -14.39048 -14.20035 -13.73104 -13.22813 -12.99479 -12.08146 -11.84705 -11.57213 -11.48622 -11.13438 -10.98267 -10.81577 -10.77935 -10.72302 -10.54049 -10.27158 -10.10491 -10.00664 -9.77461 -9.63582 -9.24817 -8.42659 -6.85203 -6.68726 -6.45044 -5.95544 -3.48269 1.94592 2.14169 2.20607 3.13530 3.28134 3.54828 3.57578 3.61280 3.78689 4.32177 4.50963 4.61199 4.68576 4.74193 4.87539 5.09052 5.24892 5.31140 5.44915 5.50806 5.61519 5.74839 5.77527 5.94565 5.99282 6.05490 6.26564 6.35519 6.46657 6.81954 6.86876 7.05058 7.06095 7.43418 7.78446 7.94124 8.34133 8.96874 9.64354 10.07622 11.11906 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.008318 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.029395 B = 3365.582746 C = 4356.946069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.292 1.292 5 H -0.292 1.292 6 H -0.255 1.255 7 C -0.297 4.297 8 H 0.063 0.937 9 N -0.506 5.506 10 C 0.344 3.656 11 N -0.354 5.354 12 N -0.287 5.287 13 C 0.210 3.790 14 N -0.482 5.482 15 C 0.082 3.918 16 C -0.177 4.177 17 C -0.176 4.176 18 C 0.466 3.534 19 S -0.593 6.593 20 C 0.113 3.887 21 C -0.183 4.183 22 C -0.219 4.219 23 H 0.265 0.735 24 H 0.069 0.931 25 H 0.164 0.836 26 H 0.220 0.780 27 H 0.155 0.845 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.449 -8.590 -11.091 14.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.130 4.130 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.180 1.180 7 C -0.426 4.426 8 H 0.080 0.920 9 N -0.217 5.217 10 C 0.139 3.861 11 N -0.155 5.155 12 N -0.107 5.107 13 C -0.090 4.090 14 N -0.184 5.184 15 C -0.023 4.023 16 C -0.215 4.215 17 C -0.215 4.215 18 C 0.106 3.894 19 S -0.465 6.465 20 C 0.005 3.995 21 C -0.221 4.221 22 C -0.259 4.259 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.180 0.820 26 H 0.236 0.764 27 H 0.172 0.828 28 H 0.119 0.881 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.745 -8.151 -10.088 13.499 hybrid contribution 1.028 0.203 -0.683 1.250 sum 4.773 -7.948 -10.771 14.211 Atomic orbital electron populations 1.69575 1.06168 1.27374 1.48456 1.24893 0.94827 0.98828 0.94408 0.86243 0.79672 0.81981 0.78244 1.21749 1.21939 1.17968 1.18734 0.94422 0.84294 1.45113 0.91963 1.43994 1.46333 1.03296 1.28124 1.22748 0.87662 1.05358 0.70371 1.54007 1.43834 0.98854 1.18803 1.77042 1.17429 1.10030 1.06246 1.25963 0.99575 0.86077 0.97392 1.45839 1.47564 1.05681 1.19356 1.21899 0.95286 0.98715 0.86356 1.23435 1.02700 1.00336 0.94988 1.23464 0.91710 1.04180 1.02167 1.24238 0.86131 0.96516 0.82519 1.93107 1.79040 0.88419 1.85912 1.21306 0.91522 0.90145 0.96550 1.23074 1.05702 1.02457 0.90907 1.23275 0.99918 0.99147 1.03566 0.92457 0.91315 0.81989 0.76375 0.82753 0.88144 0.86923 0.87065 0.88157 0.88887 0.87861 0.90331 0.90694 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.59 11.27 55.49 0.63 -23.96 16 2 C 0.08 2.08 4.00 -17.43 -0.07 2.01 16 3 Si 0.91 23.63 28.32 -169.99 -4.81 18.82 16 4 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.25 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.30 -8.01 8.14 -15.06 -0.12 -8.14 16 8 H 0.06 1.75 7.19 -52.49 -0.38 1.37 16 9 N -0.51 -12.31 3.03 -169.35 -0.51 -12.83 16 10 C 0.34 8.10 6.44 -63.75 -0.41 7.69 16 11 N -0.35 -7.65 3.86 -65.18 -0.25 -7.90 16 12 N -0.29 -5.18 12.53 29.86 0.37 -4.81 16 13 C 0.21 2.98 11.96 -89.14 -1.07 1.92 16 14 N -0.48 -7.90 3.07 -112.10 -0.34 -8.25 16 15 C 0.08 1.04 6.53 -67.93 -0.44 0.60 16 16 C -0.18 -1.40 9.98 -26.69 -0.27 -1.67 16 17 C -0.18 -1.74 10.40 -26.69 -0.28 -2.02 16 18 C 0.47 10.09 7.86 -86.73 -0.68 9.41 16 19 S -0.59 -15.01 27.43 -107.50 -2.95 -17.96 16 20 C 0.11 2.39 6.61 -67.93 -0.45 1.94 16 21 C -0.18 -3.58 9.79 -26.73 -0.26 -3.84 16 22 C -0.22 -4.23 10.12 -26.73 -0.27 -4.50 16 23 H 0.27 7.36 8.32 -40.82 -0.34 7.02 16 24 H 0.07 1.50 8.04 -51.92 -0.42 1.08 16 25 H 0.16 4.34 4.89 -51.93 -0.25 4.08 16 26 H 0.22 1.85 7.01 -52.49 -0.37 1.48 16 27 H 0.16 2.14 7.87 -51.93 -0.41 1.73 16 28 H 0.10 0.65 6.80 -51.93 -0.35 0.29 16 29 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.09 1.81 8.10 -51.92 -0.42 1.39 16 33 H 0.10 2.25 6.87 -51.93 -0.36 1.89 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.77 8.10 -51.93 -0.42 1.35 16 LS Contribution 316.59 15.07 4.77 4.77 Total: -1.00 -32.54 316.59 -12.05 -44.59 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -4.63 Total: 4.12 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -4.32 Total: 3.40 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.11 Total: -57.75 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -4.81 Total: 18.82 kcal Atomic # 16 Polarization: -15.01 SS G_CDS: -2.95 Total: -17.96 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.54 -12.05 -44.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745436510.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.004 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 193.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds