Wall clock time and date at job start Tue Mar 31 2020 01:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99937 * 2 1 4 4 H 1.48505 * 109.47127 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47193 * 119.99566 * 3 2 1 6 6 H 1.48493 * 109.47058 * 240.00046 * 3 2 1 7 7 C 1.38804 * 120.00374 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00226 * 199.71959 * 7 2 1 9 9 N 1.36938 * 119.99938 * 19.72185 * 7 2 1 10 10 C 1.46504 * 119.99826 * 36.37466 * 9 7 2 11 11 N 1.46498 * 109.46934 * 90.00364 * 10 9 7 12 12 N 1.40165 * 126.35625 * 90.02459 * 11 10 9 13 13 C 1.29416 * 108.13900 * 179.97438 * 12 11 10 14 14 N 1.37325 * 108.83059 * 0.02562 * 13 12 11 15 15 C 1.46500 * 125.82774 * 180.02562 * 14 13 12 16 16 C 1.52998 * 117.49942 * 8.71597 * 15 14 13 17 17 C 1.52998 * 117.49691 * 300.05371 * 15 14 13 18 18 C 1.34816 * 108.34265 * 359.73251 * 14 13 12 19 19 S 1.71195 * 126.30461 * 180.30542 * 18 14 13 20 20 C 1.46494 * 120.00037 * 216.37534 * 9 7 2 21 21 C 1.52996 * 117.50108 * 12.80329 * 20 9 7 22 22 C 1.53002 * 60.00155 * 252.50641 * 21 20 9 23 23 H 0.97007 * 120.00098 * 355.54460 * 1 2 3 24 24 H 1.09007 * 109.46864 * 210.00132 * 10 9 7 25 25 H 1.08997 * 109.47112 * 330.00090 * 10 9 7 26 26 H 1.07997 * 125.58983 * 179.97438 * 13 12 11 27 27 H 1.09005 * 115.54868 * 154.38798 * 15 14 13 28 28 H 1.09000 * 117.50120 * 0.02562 * 16 15 14 29 29 H 1.09005 * 117.49834 * 145.02649 * 16 15 14 30 30 H 1.09000 * 117.50469 * 214.98000 * 17 15 14 31 31 H 1.09003 * 117.50068 * 359.97438 * 17 15 14 32 32 H 1.09007 * 115.55095 * 158.50808 * 20 9 7 33 33 H 1.09003 * 117.49923 * 359.97438 * 21 20 9 34 34 H 1.09003 * 117.50057 * 145.01654 * 21 20 9 35 35 H 1.08992 * 117.50000 * 252.50780 * 22 21 20 36 36 H 1.08997 * 117.51251 * 107.47369 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7466 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0428 -1.2293 0.3161 9 7 1.3859 -2.3534 -0.3991 10 6 0.4130 -2.3169 -1.4939 11 7 1.1024 -2.5392 -2.7673 12 7 1.3313 -3.7773 -3.3832 13 6 1.9674 -3.5651 -4.4902 14 7 2.1716 -2.2146 -4.6322 15 6 2.8552 -1.5639 -5.7527 16 6 3.2116 -2.4304 -6.9622 17 6 4.3123 -1.9514 -6.0124 18 6 1.6299 -1.5893 -3.5677 19 16 1.6161 0.0986 -3.2825 20 6 1.6907 -3.6215 0.2680 21 6 2.4728 -3.5586 1.5815 22 6 3.1547 -4.0644 0.3086 23 1 -0.4851 0.8376 0.0653 24 1 -0.3327 -3.0976 -1.3434 25 1 -0.0779 -1.3440 -1.5114 26 1 2.2862 -4.3256 -5.1875 27 1 2.5681 -0.5294 -5.9417 28 1 2.9370 -3.4846 -6.9245 29 1 3.1595 -1.9659 -7.9470 30 1 4.9839 -1.1721 -6.3726 31 1 4.7625 -2.6902 -5.3493 32 1 0.9324 -4.3984 0.1701 33 1 2.7609 -2.5737 1.9491 34 1 2.2290 -4.2941 2.3481 35 1 3.3595 -5.1326 0.2378 36 1 3.8909 -3.4123 -0.1613 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745436510.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:42 Heat of formation + Delta-G solvation = 163.760235 kcal Electronic energy + Delta-G solvation = -20358.378748 eV Core-core repulsion = 17394.336721 eV Total energy + Delta-G solvation = -2964.042027 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.42980 -39.10062 -38.35486 -35.76278 -34.14916 -33.20255 -31.90109 -28.01686 -25.85072 -24.96416 -23.81558 -23.32990 -23.05319 -22.16828 -21.78173 -19.32776 -18.51654 -17.60573 -17.24151 -17.06653 -16.77952 -16.28820 -16.14614 -15.56148 -15.39744 -14.82355 -14.08531 -13.79786 -13.23828 -13.03726 -12.94001 -12.80087 -12.64641 -12.48120 -12.40818 -12.29487 -12.10100 -12.05264 -11.74173 -11.63302 -11.51882 -11.06264 -10.64580 -10.44192 -8.75833 -8.56416 -8.37526 -8.03267 -5.56002 0.28494 0.57754 0.94634 1.37232 1.47210 1.59525 1.65927 1.84188 2.48776 2.72175 3.20304 3.28855 3.35818 3.45427 3.53537 3.82807 3.87273 4.01563 4.16378 4.19730 4.36631 4.39833 4.51474 4.69327 4.84355 4.89367 4.94278 5.03917 5.12695 5.18807 5.22549 5.46962 5.52290 5.64210 5.75031 6.28600 6.49489 6.97398 7.65638 8.08088 9.01379 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.008318 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.029395 B = 3365.582746 C = 4356.946069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.050 3.950 3 Si 0.939 3.061 4 H -0.298 1.298 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.288 4.288 8 H 0.043 0.957 9 N -0.524 5.524 10 C 0.355 3.645 11 N -0.363 5.363 12 N -0.308 5.308 13 C 0.243 3.757 14 N -0.467 5.467 15 C 0.028 3.972 16 C -0.126 4.126 17 C -0.171 4.171 18 C 0.465 3.535 19 S -0.687 6.687 20 C 0.093 3.907 21 C -0.177 4.177 22 C -0.200 4.200 23 H 0.258 0.742 24 H 0.085 0.915 25 H 0.130 0.870 26 H 0.289 0.711 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.137 0.863 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.587 -12.459 -13.349 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.152 4.152 3 Si 0.769 3.231 4 H -0.225 1.225 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.416 4.416 8 H 0.061 0.939 9 N -0.238 5.238 10 C 0.149 3.851 11 N -0.160 5.160 12 N -0.128 5.128 13 C -0.056 4.056 14 N -0.165 5.165 15 C -0.075 4.075 16 C -0.163 4.163 17 C -0.209 4.209 18 C 0.099 3.901 19 S -0.561 6.561 20 C -0.014 4.014 21 C -0.216 4.216 22 C -0.240 4.240 23 H 0.067 0.933 24 H 0.103 0.897 25 H 0.147 0.853 26 H 0.304 0.696 27 H 0.150 0.850 28 H 0.149 0.851 29 H 0.155 0.845 30 H 0.138 0.862 31 H 0.118 0.882 32 H 0.132 0.868 33 H 0.092 0.908 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.921 -12.060 -12.387 17.975 hybrid contribution 0.774 1.185 -0.254 1.438 sum 5.695 -10.875 -12.642 17.621 Atomic orbital electron populations 1.69654 1.06469 1.26775 1.50492 1.25098 0.95052 0.99751 0.95317 0.85793 0.78821 0.81122 0.77376 1.22464 1.20927 1.20309 1.18529 0.93443 0.85514 1.44159 0.93897 1.43946 1.46704 1.03723 1.29466 1.22171 0.87647 1.04302 0.70948 1.53124 1.43548 1.00514 1.18799 1.77077 1.20201 1.07388 1.08125 1.27307 0.95862 0.85865 0.96524 1.45946 1.45746 1.06409 1.18438 1.22251 0.97889 0.99319 0.88005 1.23690 0.97912 1.00952 0.93782 1.23566 0.90391 1.04376 1.02605 1.23545 0.87165 0.95111 0.84239 1.93215 1.82396 0.92519 1.87923 1.21562 0.92998 0.89313 0.97536 1.23072 1.05033 1.02000 0.91448 1.23192 0.97812 1.00398 1.02584 0.93273 0.89729 0.85342 0.69636 0.85039 0.85143 0.84490 0.86214 0.88161 0.86766 0.90770 0.86934 0.87273 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.31 11.27 21.65 0.24 -52.06 16 2 C 0.05 2.89 4.00 84.86 0.34 3.23 16 3 Si 0.94 50.81 28.32 68.60 1.94 52.75 16 4 H -0.30 -16.25 7.11 99.48 0.71 -15.55 16 5 H -0.28 -14.55 7.11 99.48 0.71 -13.85 16 6 H -0.28 -15.89 7.11 99.48 0.71 -15.18 16 7 C -0.29 -16.01 8.14 84.03 0.68 -15.33 16 8 H 0.04 2.52 7.19 -2.91 -0.02 2.50 16 9 N -0.52 -25.78 3.03 -689.69 -2.09 -27.87 16 10 C 0.36 16.94 6.44 170.96 1.10 18.04 16 11 N -0.36 -15.44 3.86 -360.12 -1.39 -16.83 16 12 N -0.31 -10.13 12.53 -59.43 -0.74 -10.87 16 13 C 0.24 5.74 11.96 179.83 2.15 7.89 16 14 N -0.47 -14.23 3.07 -508.58 -1.56 -15.79 16 15 C 0.03 0.65 6.53 44.99 0.29 0.95 16 16 C -0.13 -1.28 9.98 30.62 0.31 -0.97 16 17 C -0.17 -2.73 10.40 30.62 0.32 -2.41 16 18 C 0.47 20.23 7.86 178.99 1.41 21.64 16 19 S -0.69 -36.60 27.43 -56.49 -1.55 -38.14 16 20 C 0.09 3.79 6.61 44.99 0.30 4.09 16 21 C -0.18 -6.68 9.79 30.59 0.30 -6.38 16 22 C -0.20 -7.32 10.12 30.60 0.31 -7.01 16 23 H 0.26 15.03 8.32 -92.70 -0.77 14.26 16 24 H 0.08 3.67 8.04 -2.38 -0.02 3.65 16 25 H 0.13 7.15 4.89 -2.39 -0.01 7.14 16 26 H 0.29 2.49 7.01 -2.91 -0.02 2.47 16 27 H 0.13 3.67 7.87 -2.38 -0.02 3.65 16 28 H 0.13 0.61 6.80 -2.39 -0.02 0.59 16 29 H 0.14 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.11 4.14 8.10 -2.38 -0.02 4.13 16 33 H 0.07 3.25 6.87 -2.39 -0.02 3.24 16 34 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 35 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.05 2.32 8.10 -2.39 -0.02 2.30 16 Total: -1.00 -78.34 316.59 3.44 -74.89 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 1.09 Total: 10.19 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: 7.51 Total: 23.74 kcal Atomic # 7 Polarization: -117.88 SS G_CDS: -5.55 Total: -123.42 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 1.94 Total: 52.75 kcal Atomic # 16 Polarization: -36.60 SS G_CDS: -1.55 Total: -38.14 kcal Total: -78.34 3.44 -74.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745436510.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.653 kcal (2) G-P(sol) polarization free energy of solvation -78.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds