Wall clock time and date at job start Tue Mar 31 2020 01:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00016 * 2 1 4 4 C 1.53001 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47086 * 54.99935 * 4 3 2 6 6 O 1.42904 * 109.46764 * 294.99890 * 4 3 2 7 7 C 1.50700 * 109.47424 * 175.00326 * 4 3 2 8 8 O 1.20826 * 120.00260 * 114.99664 * 7 4 3 9 9 O 1.34232 * 119.99527 * 294.99955 * 7 4 3 10 10 C 1.45199 * 116.99836 * 180.02562 * 9 7 4 11 11 C 1.50703 * 109.47141 * 180.02562 * 10 9 7 12 12 C 1.38638 * 119.74516 * 269.72458 * 11 10 9 13 13 C 1.37611 * 120.24514 * 179.72215 * 12 11 10 14 14 C 1.40723 * 119.74584 * 0.56835 * 13 12 11 15 15 C 1.41396 * 120.24425 * 179.67952 * 14 13 12 16 16 H 1.07995 * 120.00099 * 204.40596 * 15 14 13 17 17 C 1.39949 * 119.99973 * 24.41169 * 15 14 13 18 18 N 1.30828 * 119.99697 * 17.84535 * 17 15 14 19 19 Si 1.86796 * 120.00042 * 197.84287 * 17 15 14 20 20 H 1.48504 * 109.46797 * 89.99995 * 19 17 15 21 21 H 1.48492 * 109.47310 * 210.00141 * 19 17 15 22 22 H 1.48502 * 109.47100 * 330.00488 * 19 17 15 23 23 C 1.40719 * 119.50884 * 359.70622 * 14 13 12 24 24 C 1.37618 * 119.74455 * 0.02562 * 23 14 13 25 25 H 1.08996 * 109.47215 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47127 * 300.00322 * 1 2 3 27 27 H 1.08999 * 109.46984 * 59.99525 * 1 2 3 28 28 H 1.08999 * 109.47322 * 300.00110 * 3 2 1 29 29 H 1.09000 * 109.47151 * 60.00515 * 3 2 1 30 30 H 0.96698 * 114.00512 * 299.99940 * 6 4 3 31 31 H 1.09008 * 109.47172 * 299.99940 * 10 9 7 32 32 H 1.08998 * 109.47385 * 59.99552 * 10 9 7 33 33 H 1.08000 * 119.87483 * 359.97438 * 12 11 10 34 34 H 1.08002 * 120.13204 * 180.28124 * 13 12 11 35 35 H 0.97000 * 119.99481 * 180.02562 * 18 17 15 36 36 H 1.08003 * 120.12391 * 179.97438 * 23 14 13 37 37 H 1.07997 * 119.87234 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8507 0.5685 -0.8427 6 8 3.9658 0.5792 1.2202 7 6 4.1480 2.5560 -0.1244 8 8 4.8044 3.0086 0.7834 9 8 3.9642 3.2745 -1.2432 10 6 4.5839 4.5867 -1.2930 11 6 4.2705 5.2404 -2.6142 12 6 5.1230 5.0566 -3.6920 13 6 4.8438 5.6440 -4.9047 14 6 3.6942 6.4434 -5.0450 15 6 3.4007 7.0575 -6.2844 16 1 2.7897 7.9475 -6.3148 17 6 3.9020 6.5120 -7.4717 18 7 4.3330 5.2770 -7.4932 19 14 3.9555 7.5472 -9.0257 20 1 5.2541 8.2639 -9.0984 21 1 3.8089 6.6667 -10.2123 22 1 2.8462 8.5341 -9.0014 23 6 2.8392 6.6276 -3.9427 24 6 3.1353 6.0259 -2.7409 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8899 28 1 1.6886 1.8464 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 3.7191 1.0745 2.0132 31 1 4.1956 5.2030 -0.4820 32 1 5.6636 4.4830 -1.1855 33 1 6.0074 4.4469 -3.5804 34 1 5.5068 5.4959 -5.7443 35 1 4.6808 4.8990 -8.3161 36 1 1.9544 7.2395 -4.0392 37 1 2.4808 6.1662 -1.8934 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751494183.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:28 Heat of formation + Delta-G solvation = -169.250539 kcal Electronic energy + Delta-G solvation = -21027.575424 eV Core-core repulsion = 17541.754593 eV Total energy + Delta-G solvation = -3485.820831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.51685 -38.40383 -37.72915 -36.77151 -35.78613 -33.92958 -31.18254 -30.33796 -29.42281 -27.44240 -26.63705 -24.42081 -23.52769 -21.15273 -21.03679 -20.11725 -18.21773 -17.44912 -17.38795 -16.70176 -16.35839 -16.06061 -15.68711 -15.41970 -14.60655 -14.48579 -14.05316 -13.80166 -13.73162 -12.95869 -12.53337 -12.46950 -12.44193 -12.08849 -12.01166 -11.78308 -11.68689 -11.23791 -11.04865 -10.95554 -10.84135 -10.50653 -10.28297 -10.12885 -9.96000 -9.73868 -9.51714 -9.27336 -7.62026 -7.51016 -6.91223 -4.51550 2.12178 2.31876 2.84108 2.95670 3.00257 3.03011 3.16445 3.59592 3.82205 4.14385 4.46207 4.55261 4.70330 4.96142 5.09854 5.14430 5.27764 5.44916 5.45930 5.54418 5.58272 5.62035 5.98592 6.18102 6.25886 6.67520 6.80467 6.82087 6.92929 7.12699 7.21160 7.23999 7.46279 7.67653 7.86159 7.90881 7.95280 8.14055 8.49014 8.73604 8.81546 10.02440 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.023704 B = 0.003366 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.974101 B = 8316.268474 C = 8834.973502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.036 3.964 4 C 0.121 3.879 5 H 0.146 0.854 6 O -0.526 6.526 7 C 0.431 3.569 8 O -0.508 6.508 9 O -0.345 6.345 10 C 0.135 3.865 11 C -0.239 4.239 12 C -0.075 4.075 13 C -0.170 4.170 14 C 0.119 3.881 15 C -0.456 4.456 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.783 5.783 19 Si 0.911 3.089 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.231 4.231 24 C -0.063 4.063 25 H 0.088 0.912 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.382 0.618 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.283 0.717 36 H 0.095 0.905 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.459 -5.995 9.316 11.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C -0.041 4.041 4 C 0.060 3.940 5 H 0.163 0.837 6 O -0.331 6.331 7 C 0.272 3.728 8 O -0.397 6.397 9 O -0.262 6.262 10 C 0.063 3.937 11 C -0.240 4.240 12 C -0.093 4.093 13 C -0.189 4.189 14 C 0.116 3.884 15 C -0.484 4.484 16 H 0.099 0.901 17 C -0.144 4.144 18 N -0.408 5.408 19 Si 0.735 3.265 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.250 4.250 24 C -0.082 4.082 25 H 0.107 0.893 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.231 0.769 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.138 0.862 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.819 -6.608 8.988 11.791 hybrid contribution -0.340 1.125 -0.358 1.229 sum -4.159 -5.483 8.630 11.038 Atomic orbital electron populations 1.22799 0.80507 1.03005 1.00319 1.87910 1.20011 1.26410 1.95502 1.23091 0.92380 0.86103 1.02563 1.21441 0.92157 0.89472 0.90935 0.83711 1.86676 1.81360 1.50258 1.14802 1.24361 0.79022 0.88118 0.81258 1.90654 1.37813 1.70759 1.40508 1.86747 1.69139 1.31704 1.38589 1.21798 0.96363 0.78340 0.97171 1.18654 1.01990 1.09172 0.94212 1.20546 0.97473 0.98266 0.93050 1.21303 0.98680 1.03058 0.95905 1.17693 0.89450 0.89108 0.92127 1.19705 1.27741 1.10496 0.90493 0.90107 1.25983 0.92672 0.94511 1.01269 1.69827 1.29051 1.12288 1.29603 0.86256 0.79959 0.80466 0.79785 1.19117 1.20163 1.18489 1.20962 1.01173 1.08554 0.94329 1.20375 0.94799 0.96710 0.96298 0.89320 0.94020 0.93557 0.90268 0.92390 0.76912 0.91998 0.91833 0.89267 0.86198 0.90553 0.88703 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.44 10.67 -40.09 -0.43 -4.87 16 3 C 0.04 0.40 5.55 37.16 0.21 0.61 16 4 C 0.12 1.52 3.77 -27.88 -0.11 1.41 16 5 H 0.15 1.74 8.14 -51.93 -0.42 1.32 16 6 O -0.53 -6.61 12.96 -59.73 -0.77 -7.38 16 7 C 0.43 6.65 7.27 36.01 0.26 6.91 16 8 O -0.51 -8.87 16.07 -25.46 -0.41 -9.28 16 9 O -0.35 -6.07 10.17 -39.26 -0.40 -6.47 16 10 C 0.13 2.49 5.58 36.01 0.20 2.69 16 11 C -0.24 -5.13 5.54 -104.33 -0.58 -5.71 16 12 C -0.07 -1.71 9.67 -39.66 -0.38 -2.09 16 13 C -0.17 -4.28 8.70 -38.87 -0.34 -4.62 16 14 C 0.12 3.06 5.58 -106.82 -0.60 2.46 16 15 C -0.46 -11.61 9.05 -37.74 -0.34 -11.95 16 16 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 17 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 18 N -0.78 -19.49 10.95 55.55 0.61 -18.88 16 19 Si 0.91 17.85 29.60 -169.99 -5.03 12.82 16 20 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 21 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 22 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 23 C -0.23 -5.45 9.80 -38.87 -0.38 -5.83 16 24 C -0.06 -1.37 9.67 -39.66 -0.38 -1.76 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.38 3.65 8.79 45.56 0.40 4.05 16 31 H 0.06 1.07 8.07 -51.92 -0.42 0.65 16 32 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 33 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 34 H 0.12 3.10 6.15 -52.49 -0.32 2.78 16 35 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 36 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 37 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 328.36 15.07 4.95 4.95 Total: -1.00 -29.13 328.36 -7.01 -36.14 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -4.11 Total: 7.77 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -1.41 Total: -14.80 kcal Atomic # 7 Polarization: -19.49 SS G_CDS: 0.61 Total: -18.88 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -2.01 Total: -28.00 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.13 -7.01 -36.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751494183.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.113 kcal (2) G-P(sol) polarization free energy of solvation -29.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds