Wall clock time and date at job start Tue Mar 31 2020 01:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00016 * 2 1 4 4 C 1.53001 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47086 * 54.99935 * 4 3 2 6 6 O 1.42904 * 109.46764 * 294.99890 * 4 3 2 7 7 C 1.50700 * 109.47424 * 175.00326 * 4 3 2 8 8 O 1.20826 * 120.00260 * 114.99664 * 7 4 3 9 9 O 1.34232 * 119.99527 * 294.99955 * 7 4 3 10 10 C 1.45199 * 116.99836 * 180.02562 * 9 7 4 11 11 C 1.50703 * 109.47141 * 180.02562 * 10 9 7 12 12 C 1.38638 * 119.74516 * 269.72458 * 11 10 9 13 13 C 1.37611 * 120.24514 * 179.72215 * 12 11 10 14 14 C 1.40723 * 119.74584 * 0.56835 * 13 12 11 15 15 C 1.41396 * 120.24425 * 179.67952 * 14 13 12 16 16 H 1.07995 * 120.00099 * 204.40596 * 15 14 13 17 17 C 1.39949 * 119.99973 * 24.41169 * 15 14 13 18 18 N 1.30828 * 119.99697 * 17.84535 * 17 15 14 19 19 Si 1.86796 * 120.00042 * 197.84287 * 17 15 14 20 20 H 1.48504 * 109.46797 * 89.99995 * 19 17 15 21 21 H 1.48492 * 109.47310 * 210.00141 * 19 17 15 22 22 H 1.48502 * 109.47100 * 330.00488 * 19 17 15 23 23 C 1.40719 * 119.50884 * 359.70622 * 14 13 12 24 24 C 1.37618 * 119.74455 * 0.02562 * 23 14 13 25 25 H 1.08996 * 109.47215 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47127 * 300.00322 * 1 2 3 27 27 H 1.08999 * 109.46984 * 59.99525 * 1 2 3 28 28 H 1.08999 * 109.47322 * 300.00110 * 3 2 1 29 29 H 1.09000 * 109.47151 * 60.00515 * 3 2 1 30 30 H 0.96698 * 114.00512 * 299.99940 * 6 4 3 31 31 H 1.09008 * 109.47172 * 299.99940 * 10 9 7 32 32 H 1.08998 * 109.47385 * 59.99552 * 10 9 7 33 33 H 1.08000 * 119.87483 * 359.97438 * 12 11 10 34 34 H 1.08002 * 120.13204 * 180.28124 * 13 12 11 35 35 H 0.97000 * 119.99481 * 180.02562 * 18 17 15 36 36 H 1.08003 * 120.12391 * 179.97438 * 23 14 13 37 37 H 1.07997 * 119.87234 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8507 0.5685 -0.8427 6 8 3.9658 0.5792 1.2202 7 6 4.1480 2.5560 -0.1244 8 8 4.8044 3.0086 0.7834 9 8 3.9642 3.2745 -1.2432 10 6 4.5839 4.5867 -1.2930 11 6 4.2705 5.2404 -2.6142 12 6 5.1230 5.0566 -3.6920 13 6 4.8438 5.6440 -4.9047 14 6 3.6942 6.4434 -5.0450 15 6 3.4007 7.0575 -6.2844 16 1 2.7897 7.9475 -6.3148 17 6 3.9020 6.5120 -7.4717 18 7 4.3330 5.2770 -7.4932 19 14 3.9555 7.5472 -9.0257 20 1 5.2541 8.2639 -9.0984 21 1 3.8089 6.6667 -10.2123 22 1 2.8462 8.5341 -9.0014 23 6 2.8392 6.6276 -3.9427 24 6 3.1353 6.0259 -2.7409 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8899 28 1 1.6886 1.8464 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 3.7191 1.0745 2.0132 31 1 4.1956 5.2030 -0.4820 32 1 5.6636 4.4830 -1.1855 33 1 6.0074 4.4469 -3.5804 34 1 5.5068 5.4959 -5.7443 35 1 4.6808 4.8990 -8.3161 36 1 1.9544 7.2395 -4.0392 37 1 2.4808 6.1662 -1.8934 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751494183.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:27 Heat of formation + Delta-G solvation = -186.992409 kcal Electronic energy + Delta-G solvation = -21028.344769 eV Core-core repulsion = 17541.754593 eV Total energy + Delta-G solvation = -3486.590176 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.119 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.78739 -39.65169 -39.13240 -37.95355 -36.97557 -35.70369 -32.74704 -31.50837 -31.22229 -28.98185 -27.53585 -25.79205 -24.80055 -22.96405 -22.28816 -21.81778 -19.37227 -19.27406 -18.58380 -17.83013 -17.30641 -17.17409 -16.96852 -16.89424 -16.00912 -15.69646 -15.58241 -15.24973 -14.90577 -14.42204 -14.02756 -13.93676 -13.85764 -13.56223 -13.25179 -13.02470 -12.85948 -12.70947 -12.61901 -12.49780 -12.12087 -11.89035 -11.75039 -11.55167 -11.31416 -11.22750 -11.04168 -10.74267 -9.44919 -9.34289 -8.69725 -6.40914 0.69469 0.91321 1.10474 1.37641 1.41409 1.52160 1.73036 2.18923 2.58903 2.76254 3.25142 3.60799 3.66952 3.81076 3.84421 4.05512 4.09263 4.36051 4.44634 4.47520 4.50002 4.54245 4.55999 4.60650 4.87500 5.00271 5.11074 5.29068 5.35306 5.39409 5.64158 5.87026 6.04863 6.04915 6.13154 6.31115 6.37609 6.62195 6.63695 6.87652 6.96275 8.26754 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.023704 B = 0.003366 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.974101 B = 8316.268474 C = 8834.973502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.400 6.400 3 C 0.041 3.959 4 C 0.129 3.871 5 H 0.150 0.850 6 O -0.534 6.534 7 C 0.437 3.563 8 O -0.527 6.527 9 O -0.355 6.355 10 C 0.139 3.861 11 C -0.232 4.232 12 C -0.081 4.081 13 C -0.194 4.194 14 C 0.088 3.912 15 C -0.493 4.493 16 H 0.080 0.920 17 C 0.036 3.964 18 N -0.817 5.817 19 Si 0.984 3.016 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.257 1.257 23 C -0.245 4.245 24 C -0.063 4.063 25 H 0.102 0.898 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.395 0.605 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.291 0.709 36 H 0.103 0.897 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.153 -6.322 10.267 13.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.319 6.319 3 C -0.036 4.036 4 C 0.068 3.932 5 H 0.167 0.833 6 O -0.341 6.341 7 C 0.280 3.720 8 O -0.417 6.417 9 O -0.271 6.271 10 C 0.067 3.933 11 C -0.233 4.233 12 C -0.100 4.100 13 C -0.214 4.214 14 C 0.086 3.914 15 C -0.522 4.522 16 H 0.098 0.902 17 C -0.180 4.180 18 N -0.442 5.442 19 Si 0.805 3.195 20 H -0.187 1.187 21 H -0.192 1.192 22 H -0.180 1.180 23 C -0.265 4.265 24 C -0.081 4.081 25 H 0.120 0.880 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.246 0.754 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.121 0.879 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.524 -6.945 9.968 12.964 hybrid contribution -0.138 1.120 -0.457 1.218 sum -4.662 -5.825 9.511 12.088 Atomic orbital electron populations 1.23001 0.78881 1.04244 1.01103 1.87871 1.21795 1.26599 1.95664 1.23022 0.91122 0.86229 1.03272 1.21437 0.93120 0.87387 0.91230 0.83281 1.86659 1.81604 1.50509 1.15365 1.24892 0.78401 0.88565 0.80114 1.90649 1.38755 1.71370 1.40957 1.86704 1.69255 1.31347 1.39821 1.21646 0.96880 0.79060 0.95725 1.18978 1.01053 1.08307 0.94998 1.20788 0.98375 0.98000 0.92789 1.21268 0.98965 1.04641 0.96499 1.18044 0.90211 0.89955 0.93211 1.19954 1.29502 1.11229 0.91513 0.90171 1.26816 0.91710 0.95381 1.04139 1.69875 1.29805 1.13699 1.30864 0.85164 0.79982 0.78701 0.75673 1.18698 1.19198 1.18030 1.21184 1.01367 1.09136 0.94765 1.20714 0.95173 0.95668 0.96585 0.87975 0.92649 0.93339 0.90593 0.90657 0.75419 0.90319 0.91346 0.87676 0.87880 0.89864 0.87859 0.86110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 11.01 113.37 1.25 1.59 16 2 O -0.40 -8.53 10.67 -144.34 -1.54 -10.07 16 3 C 0.04 0.81 5.55 71.98 0.40 1.21 16 4 C 0.13 2.99 3.77 29.85 0.11 3.10 16 5 H 0.15 3.32 8.14 -2.39 -0.02 3.30 16 6 O -0.53 -12.30 12.96 -125.56 -1.63 -13.92 16 7 C 0.44 12.60 7.27 71.24 0.52 13.12 16 8 O -0.53 -17.31 16.07 28.38 0.46 -16.86 16 9 O -0.35 -11.73 10.17 -51.43 -0.52 -12.25 16 10 C 0.14 4.81 5.58 71.24 0.40 5.21 16 11 C -0.23 -9.67 5.54 -19.67 -0.11 -9.78 16 12 C -0.08 -3.71 9.67 22.22 0.21 -3.49 16 13 C -0.19 -10.07 8.70 22.73 0.20 -9.87 16 14 C 0.09 4.66 5.58 -21.29 -0.12 4.54 16 15 C -0.49 -25.87 9.05 23.46 0.21 -25.66 16 16 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 17 C 0.04 1.75 5.14 85.26 0.44 2.19 16 18 N -0.82 -41.73 10.95 21.83 0.24 -41.49 16 19 Si 0.98 36.89 29.60 68.60 2.03 38.92 16 20 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 21 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 22 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 23 C -0.25 -11.62 9.80 22.73 0.22 -11.40 16 24 C -0.06 -2.65 9.67 22.22 0.21 -2.44 16 25 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.08 1.57 8.11 -2.39 -0.02 1.55 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.39 6.65 8.79 -74.06 -0.65 6.00 16 31 H 0.08 2.48 8.07 -2.38 -0.02 2.46 16 32 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 33 H 0.11 4.35 8.06 -2.91 -0.02 4.32 16 34 H 0.10 5.59 6.15 -2.91 -0.02 5.57 16 35 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 36 H 0.10 4.58 8.06 -2.91 -0.02 4.55 16 37 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -62.56 328.36 3.42 -59.14 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.43 Total: 28.21 kcal Atomic # 6 Polarization: -35.63 SS G_CDS: 3.95 Total: -31.68 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.24 Total: -41.49 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -3.23 Total: -53.10 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Total: -62.56 3.42 -59.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751494183.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.852 kcal (2) G-P(sol) polarization free energy of solvation -62.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds