Wall clock time and date at job start Tue Mar 31 2020 01:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00013 * 2 1 4 4 C 1.53001 * 109.47362 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.47209 * 64.99360 * 4 3 2 6 6 C 1.35897 * 116.99869 * 180.02562 * 5 4 3 7 7 C 1.38738 * 120.05227 * 180.02562 * 6 5 4 8 8 C 1.38141 * 119.94391 * 180.02562 * 7 6 5 9 9 C 1.38267 * 120.05384 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.94399 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47064 * 89.99908 * 10 9 8 12 12 O 1.21208 * 119.99902 * 0.02562 * 11 10 9 13 13 O 1.34308 * 119.99862 * 179.97438 * 11 10 9 14 14 C 1.34922 * 117.00061 * 179.97438 * 13 11 10 15 15 H 1.07999 * 119.99785 * 0.02562 * 14 13 11 16 16 C 1.38750 * 120.00381 * 179.97438 * 14 13 11 17 17 N 1.31444 * 119.99695 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00301 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47039 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46930 * 120.00244 * 18 16 14 21 21 H 1.48497 * 109.47394 * 240.00432 * 18 16 14 22 22 C 1.38270 * 120.11265 * 0.25255 * 9 8 7 23 23 C 1.38141 * 120.05541 * 359.45293 * 22 9 8 24 24 H 1.08994 * 109.47140 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47349 * 300.00548 * 1 2 3 26 26 H 1.08998 * 109.46672 * 60.00419 * 1 2 3 27 27 H 1.08995 * 109.47376 * 59.99158 * 3 2 1 28 28 H 1.09004 * 109.46790 * 299.99327 * 3 2 1 29 29 H 1.09003 * 109.46760 * 305.00017 * 4 3 2 30 30 H 1.08994 * 109.47396 * 184.99566 * 4 3 2 31 31 H 1.07996 * 120.02821 * 359.97438 * 7 6 5 32 32 H 1.07993 * 119.97516 * 180.02562 * 8 7 6 33 33 H 1.09002 * 109.47152 * 330.00001 * 10 9 8 34 34 H 1.09001 * 109.46980 * 210.00101 * 10 9 8 35 35 H 0.97000 * 119.99943 * 179.97438 * 17 16 14 36 36 H 1.07999 * 119.97019 * 179.70188 * 22 9 8 37 37 H 1.07998 * 120.03323 * 180.24999 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9659 0.5791 -1.2201 6 6 5.3031 0.3973 -1.3806 7 6 5.7907 -0.1845 -2.5419 8 6 7.1503 -0.3688 -2.7025 9 6 8.0249 0.0255 -1.7068 10 6 9.5076 -0.1772 -1.8844 11 6 10.1056 1.0392 -2.5432 12 8 9.3980 1.9778 -2.8387 13 8 11.4228 1.0835 -2.8018 14 6 11.8936 2.2009 -3.3934 15 1 11.2189 3.0084 -3.6366 16 6 13.2447 2.3132 -3.6885 17 7 14.0660 1.3307 -3.3920 18 14 13.8967 3.8607 -4.5069 19 1 12.7773 4.8098 -4.7337 20 1 14.9125 4.4947 -3.6287 21 1 14.5185 3.5079 -5.8085 22 6 7.5410 0.6003 -0.5461 23 6 6.1827 0.7923 -0.3832 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.6885 1.8464 0.8898 28 1 1.6887 1.8463 -0.8901 29 1 3.8508 0.5686 0.8427 30 1 3.9785 2.1765 0.0901 31 1 5.1078 -0.4937 -3.3193 32 1 7.5304 -0.8211 -3.6064 33 1 9.6823 -1.0523 -2.5104 34 1 9.9728 -0.3285 -0.9103 35 1 15.0105 1.4090 -3.5986 36 1 8.2259 0.9030 0.2322 37 1 5.8055 1.2450 0.5219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758993643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:48 Heat of formation + Delta-G solvation = -139.654345 kcal Electronic energy + Delta-G solvation = -20644.737691 eV Core-core repulsion = 17160.200247 eV Total energy + Delta-G solvation = -3484.537444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.13373 -39.00004 -38.22550 -37.21252 -35.05148 -32.19865 -31.99888 -30.96194 -30.42550 -27.16712 -26.61674 -24.98874 -23.78463 -22.11879 -21.40542 -19.74379 -18.29243 -17.66264 -17.12883 -16.43932 -16.32620 -15.95409 -15.31605 -15.25355 -15.00489 -14.57210 -14.43098 -14.23038 -13.93272 -13.26051 -13.22106 -12.86628 -12.51724 -12.15796 -11.95393 -11.72701 -11.69799 -11.49401 -11.26620 -11.09051 -10.81416 -10.63197 -10.37346 -10.29923 -10.06932 -9.74641 -8.96339 -8.76905 -8.53604 -7.88317 -6.36566 -4.04156 1.57413 1.62704 3.12153 3.13146 3.21707 3.29385 3.37387 3.60701 3.85136 4.10222 4.56164 4.75923 4.81341 4.88219 4.93368 5.00241 5.02723 5.04429 5.11649 5.16321 5.16720 5.30306 5.32821 5.55810 5.59966 5.79296 5.93044 6.06260 6.25717 6.41272 6.52028 6.74176 6.82623 6.90375 6.99612 7.44832 7.51260 8.00950 8.78946 9.12740 9.92557 10.81758 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.045733 B = 0.002697 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.108603 B =10378.533796 C =10605.326749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.310 6.310 6 C 0.121 3.879 7 C -0.150 4.150 8 C -0.064 4.064 9 C -0.090 4.090 10 C -0.065 4.065 11 C 0.399 3.601 12 O -0.549 6.549 13 O -0.218 6.218 14 C -0.380 4.380 15 H 0.095 0.905 16 C 0.040 3.960 17 N -0.867 5.867 18 Si 0.941 3.059 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.276 1.276 22 C -0.065 4.065 23 C -0.208 4.208 24 H 0.087 0.913 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.268 0.732 36 H 0.124 0.876 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.392 -2.982 7.875 22.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.224 6.224 6 C 0.076 3.924 7 C -0.169 4.169 8 C -0.083 4.083 9 C -0.090 4.090 10 C -0.103 4.103 11 C 0.245 3.755 12 O -0.445 6.445 13 O -0.126 6.126 14 C -0.456 4.456 15 H 0.113 0.887 16 C -0.163 4.163 17 N -0.505 5.505 18 Si 0.766 3.234 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.083 4.083 23 C -0.227 4.227 24 H 0.105 0.895 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.142 0.858 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -21.383 -2.996 7.649 22.907 hybrid contribution 0.273 1.149 -0.161 1.192 sum -21.110 -1.847 7.488 22.474 Atomic orbital electron populations 1.22757 0.80929 1.02961 0.99930 1.87978 1.19733 1.27198 1.95402 1.22588 0.91756 0.85677 1.01353 1.22793 0.93397 0.98382 0.86893 1.86086 1.20438 1.77119 1.38769 1.18932 0.81924 0.96664 0.94852 1.20307 0.95421 1.04352 0.96772 1.20827 0.91838 0.97674 0.97916 1.19333 0.94235 1.00735 0.94746 1.20048 0.91081 0.96545 1.02597 1.23085 0.82735 0.88728 0.80923 1.90573 1.61980 1.38684 1.53277 1.83881 1.21569 1.41261 1.65865 1.21253 0.92628 0.93929 1.37786 0.88747 1.25321 0.94852 0.98969 0.97189 1.70003 1.04166 1.31363 1.44962 0.85635 0.78960 0.80180 0.78608 1.19018 1.20236 1.20210 1.20786 0.94436 0.95876 0.97174 1.21093 0.94105 1.07660 0.99851 0.89493 0.94124 0.93924 0.91191 0.92036 0.91148 0.90404 0.85451 0.85374 0.88171 0.88252 0.92224 0.85849 0.85861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.00 10.67 -40.08 -0.43 -4.42 16 3 C 0.06 0.53 6.32 37.16 0.23 0.76 16 4 C 0.06 0.60 5.12 37.16 0.19 0.80 16 5 O -0.31 -4.27 10.10 -24.26 -0.25 -4.51 16 6 C 0.12 1.81 6.69 -39.21 -0.26 1.54 16 7 C -0.15 -2.27 9.99 -39.43 -0.39 -2.66 16 8 C -0.06 -1.03 9.69 -39.61 -0.38 -1.42 16 9 C -0.09 -1.55 4.37 -104.60 -0.46 -2.00 16 10 C -0.06 -1.18 5.94 -29.03 -0.17 -1.36 16 11 C 0.40 9.94 7.90 36.01 0.28 10.23 16 12 O -0.55 -15.04 15.27 -19.05 -0.29 -15.33 16 13 O -0.22 -6.32 9.75 -20.70 -0.20 -6.52 16 14 C -0.38 -11.41 9.65 30.92 0.30 -11.11 16 15 H 0.09 2.87 6.86 -52.49 -0.36 2.51 16 16 C 0.04 1.15 5.49 -17.53 -0.10 1.05 16 17 N -0.87 -25.72 13.67 55.48 0.76 -24.96 16 18 Si 0.94 21.64 29.55 -169.99 -5.02 16.61 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 C -0.06 -1.02 9.69 -39.60 -0.38 -1.40 16 23 C -0.21 -2.98 9.04 -39.43 -0.36 -3.33 16 24 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.66 7.66 -51.93 -0.40 0.26 16 30 H 0.08 0.66 7.67 -51.93 -0.40 0.26 16 31 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.10 1.62 8.08 -51.93 -0.42 1.20 16 34 H 0.10 1.61 8.08 -51.93 -0.42 1.19 16 35 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.12 1.41 6.30 -52.49 -0.33 1.08 16 LS Contribution 329.07 15.07 4.96 4.96 Total: -1.00 -36.00 329.07 -5.70 -41.71 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -4.84 Total: 0.06 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -0.39 Total: -7.59 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 0.76 Total: -24.96 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -1.17 Total: -30.79 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -36.00 -5.70 -41.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758993643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.949 kcal (2) G-P(sol) polarization free energy of solvation -36.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds