Wall clock time and date at job start Tue Mar 31 2020 01:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21304 * 119.99844 * 2 1 4 4 N 1.34776 * 120.00161 * 179.97438 * 2 1 3 5 5 C 1.40430 * 119.99945 * 180.02562 * 4 2 1 6 6 C 1.34985 * 126.86731 * 0.17899 * 5 4 2 7 7 N 1.36788 * 108.96000 * 180.28818 * 6 5 4 8 8 H 0.96998 * 124.78595 * 179.74389 * 7 6 5 9 9 C 1.34547 * 110.42711 * 359.70949 * 7 6 5 10 10 C 1.50700 * 125.81826 * 179.97438 * 9 7 6 11 11 C 1.37919 * 108.35546 * 359.97438 * 9 7 6 12 12 C 1.46977 * 127.00635 * 179.97438 * 11 9 7 13 13 O 1.21563 * 120.00014 * 90.02676 * 12 11 9 14 14 O 1.34799 * 120.00067 * 269.74906 * 12 11 9 15 15 C 1.45196 * 117.00237 * 180.27096 * 14 12 11 16 16 C 1.52994 * 109.47253 * 180.02562 * 15 14 12 17 17 C 1.50707 * 109.47151 * 180.02562 * 16 15 14 18 18 H 1.07993 * 119.99862 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00014 * 180.02562 * 17 16 15 20 20 N 1.31507 * 120.00191 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00194 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46954 * 89.99713 * 21 19 17 23 23 H 1.48494 * 109.47318 * 209.99981 * 21 19 17 24 24 H 1.48509 * 109.47126 * 330.00270 * 21 19 17 25 25 H 1.08996 * 109.46977 * 240.00052 * 1 2 3 26 26 H 1.08991 * 109.47232 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46378 * 120.00182 * 1 2 3 28 28 H 0.97003 * 120.00252 * 0.02562 * 4 2 1 29 29 H 1.08008 * 125.52168 * 359.97438 * 6 5 4 30 30 H 1.09005 * 109.47070 * 270.03936 * 10 9 7 31 31 H 1.08997 * 109.47643 * 30.03838 * 10 9 7 32 32 H 1.09003 * 109.47197 * 150.04400 * 10 9 7 33 33 H 1.08998 * 109.47461 * 300.00589 * 15 14 12 34 34 H 1.09010 * 109.46796 * 60.00378 * 15 14 12 35 35 H 1.08997 * 109.47687 * 300.00272 * 16 15 14 36 36 H 1.09002 * 109.47191 * 60.00098 * 16 15 14 37 37 H 0.96997 * 120.00743 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5852 -1.1671 0.0011 6 6 4.3951 -0.0872 0.0045 7 7 5.6967 -0.5077 -0.0027 8 1 6.4682 0.0802 -0.0056 9 6 5.7559 -1.8519 -0.0045 10 6 7.0155 -2.6791 -0.0125 11 6 4.4673 -2.3434 0.0023 12 6 4.0590 -3.7553 0.0025 13 8 3.8958 -4.3406 1.0554 14 8 3.8601 -4.3996 -1.1647 15 6 3.4522 -5.7910 -1.0884 16 6 3.2772 -6.3494 -2.5020 17 6 2.8532 -7.7934 -2.4228 18 1 2.7214 -8.2655 -1.4605 19 6 2.6336 -8.5118 -3.5790 20 7 2.2632 -9.7718 -3.5099 21 14 2.8609 -7.6951 -5.2436 22 1 4.2646 -7.8731 -5.6946 23 1 1.9414 -8.3171 -6.2298 24 1 2.5577 -6.2458 -5.1294 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3632 -0.5139 -0.8900 28 1 1.6960 -2.0073 0.0005 29 1 4.0682 0.9423 0.0070 30 1 7.3138 -2.8769 -1.0421 31 1 7.8105 -2.1356 0.4980 32 1 6.8334 -3.6234 0.5007 33 1 4.2155 -6.3652 -0.5633 34 1 2.5077 -5.8637 -0.5491 35 1 2.5141 -5.7754 -3.0276 36 1 4.2218 -6.2768 -3.0410 37 1 2.1090 -10.2773 -4.3232 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763753872.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:58 Heat of formation + Delta-G solvation = -88.431791 kcal Electronic energy + Delta-G solvation = -21338.080887 eV Core-core repulsion = 17888.057371 eV Total energy + Delta-G solvation = -3450.023516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.52292 -39.70026 -39.40348 -36.03172 -34.95738 -33.30126 -31.79817 -31.24424 -30.63072 -29.27637 -26.46043 -25.24485 -22.97349 -22.28886 -20.65843 -19.99582 -19.40272 -18.38715 -17.21202 -16.52284 -16.36574 -16.08963 -15.70076 -15.62439 -15.41611 -14.68617 -14.21168 -14.05190 -13.54352 -13.28793 -12.96547 -12.91919 -12.88831 -12.78255 -12.48122 -12.40002 -12.04171 -11.45886 -11.28142 -11.03458 -10.69672 -10.65087 -10.09449 -9.98475 -9.92657 -9.68818 -9.35124 -8.62957 -8.48006 -7.85743 -6.13553 -4.14697 1.89297 1.96857 2.40118 2.73454 2.86726 3.11593 3.27347 3.34832 3.39640 3.54343 4.38111 4.47308 4.60145 4.89001 4.99582 5.11609 5.17802 5.20180 5.24862 5.36676 5.57371 5.59049 5.68507 5.73854 5.90740 5.96889 5.99922 6.45455 6.63348 6.72150 6.82972 7.18927 7.21858 7.23815 7.37814 7.62147 7.92452 8.18664 8.39227 8.88286 9.46248 10.99005 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016972 B = 0.004185 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.397407 B = 6689.101135 C = 7503.295410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.511 3.489 3 O -0.540 6.540 4 N -0.641 5.641 5 C 0.096 3.904 6 C -0.026 4.026 7 N -0.543 5.543 8 H 0.421 0.579 9 C 0.096 3.904 10 C -0.095 4.095 11 C -0.218 4.218 12 C 0.538 3.462 13 O -0.506 6.506 14 O -0.353 6.353 15 C 0.080 3.920 16 C -0.009 4.009 17 C -0.527 4.527 18 H 0.076 0.924 19 C 0.073 3.927 20 N -0.897 5.897 21 Si 0.880 3.120 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.263 1.263 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.415 0.585 29 H 0.196 0.804 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.027 0.973 36 H 0.024 0.976 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.968 21.039 6.439 22.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.417 6.417 4 N -0.284 5.284 5 C -0.003 4.003 6 C -0.156 4.156 7 N -0.140 5.140 8 H 0.258 0.742 9 C -0.022 4.022 10 C -0.153 4.153 11 C -0.228 4.228 12 C 0.380 3.620 13 O -0.395 6.395 14 O -0.270 6.270 15 C 0.007 3.993 16 C -0.046 4.046 17 C -0.565 4.565 18 H 0.094 0.906 19 C -0.129 4.129 20 N -0.535 5.535 21 Si 0.707 3.293 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.188 1.188 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.250 0.750 29 H 0.212 0.788 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.046 0.954 36 H 0.042 0.958 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.274 21.518 6.619 22.915 hybrid contribution 0.031 -0.158 -0.831 0.846 sum 4.305 21.360 5.788 22.545 Atomic orbital electron populations 1.21901 0.90400 1.05909 1.04944 1.20946 0.90906 0.82650 0.75456 1.90571 1.70293 1.31388 1.49461 1.43008 1.03764 1.10047 1.71595 1.17684 0.82381 0.91811 1.08463 1.22039 0.81050 0.99521 1.12955 1.41332 1.08334 1.05717 1.58606 0.74175 1.20237 0.94885 0.83544 1.03552 1.20501 0.91774 0.99115 1.03861 1.19106 0.92109 0.89203 1.22401 1.20156 0.73569 0.86009 0.82274 1.90842 1.47223 1.68280 1.33125 1.86692 1.77925 1.29149 1.33185 1.23403 0.99444 0.74793 1.01665 1.19619 0.97697 0.96698 0.90625 1.20849 1.47228 0.93187 0.95236 0.90622 1.24924 0.94184 0.94629 0.99194 1.69889 1.46494 1.08300 1.28843 0.86770 0.78435 0.80385 0.83729 1.20054 1.21183 1.18762 0.88939 0.88521 0.88796 0.74966 0.78781 0.89653 0.90795 0.89623 0.91670 0.91714 0.95429 0.95813 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.32 36.01 0.37 -0.82 16 2 C 0.51 5.79 7.91 -10.98 -0.09 5.71 16 3 O -0.54 -7.55 14.30 5.54 0.08 -7.47 16 4 N -0.64 -7.90 5.46 -8.51 -0.05 -7.95 16 5 C 0.10 1.37 7.22 -81.51 -0.59 0.78 16 6 C -0.03 -0.32 10.79 -16.50 -0.18 -0.50 16 7 N -0.54 -5.33 5.90 -8.67 -0.05 -5.38 16 8 H 0.42 2.45 8.96 -40.82 -0.37 2.09 16 9 C 0.10 1.16 7.21 -81.52 -0.59 0.57 16 10 C -0.10 -0.89 10.25 36.01 0.37 -0.52 16 11 C -0.22 -3.33 6.21 -102.91 -0.64 -3.97 16 12 C 0.54 9.70 7.46 34.27 0.26 9.96 16 13 O -0.51 -10.23 16.90 -19.31 -0.33 -10.56 16 14 O -0.35 -6.90 10.23 -40.76 -0.42 -7.31 16 15 C 0.08 1.70 5.42 37.15 0.20 1.90 16 16 C -0.01 -0.21 4.42 -27.88 -0.12 -0.34 16 17 C -0.53 -14.84 9.66 -34.44 -0.33 -15.17 16 18 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 19 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 20 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 21 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.10 0.62 8.12 -51.93 -0.42 0.19 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.41 4.61 8.83 -40.82 -0.36 4.25 16 29 H 0.20 2.34 5.86 -52.48 -0.31 2.03 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.92 7.95 -51.93 -0.41 0.51 16 33 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.06 1.36 8.14 -51.92 -0.42 0.94 16 35 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 36 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 326.94 15.07 4.93 4.93 Total: -1.00 -35.33 326.94 -5.92 -41.25 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -4.76 Total: 2.67 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -1.44 Total: -0.42 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.68 Total: -39.71 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.66 Total: -25.34 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.33 -5.92 -41.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763753872.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.178 kcal (2) G-P(sol) polarization free energy of solvation -35.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds