Wall clock time and date at job start Tue Mar 31 2020 01:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21304 * 119.99844 * 2 1 4 4 N 1.34776 * 120.00161 * 179.97438 * 2 1 3 5 5 C 1.40430 * 119.99945 * 180.02562 * 4 2 1 6 6 C 1.34985 * 126.86731 * 0.17899 * 5 4 2 7 7 N 1.36788 * 108.96000 * 180.28818 * 6 5 4 8 8 H 0.96998 * 124.78595 * 179.74389 * 7 6 5 9 9 C 1.34547 * 110.42711 * 359.70949 * 7 6 5 10 10 C 1.50700 * 125.81826 * 179.97438 * 9 7 6 11 11 C 1.37919 * 108.35546 * 359.97438 * 9 7 6 12 12 C 1.46977 * 127.00635 * 179.97438 * 11 9 7 13 13 O 1.21563 * 120.00014 * 90.02676 * 12 11 9 14 14 O 1.34799 * 120.00067 * 269.74906 * 12 11 9 15 15 C 1.45196 * 117.00237 * 180.27096 * 14 12 11 16 16 C 1.52994 * 109.47253 * 180.02562 * 15 14 12 17 17 C 1.50707 * 109.47151 * 180.02562 * 16 15 14 18 18 H 1.07993 * 119.99862 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00014 * 180.02562 * 17 16 15 20 20 N 1.31507 * 120.00191 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00194 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46954 * 89.99713 * 21 19 17 23 23 H 1.48494 * 109.47318 * 209.99981 * 21 19 17 24 24 H 1.48509 * 109.47126 * 330.00270 * 21 19 17 25 25 H 1.08996 * 109.46977 * 240.00052 * 1 2 3 26 26 H 1.08991 * 109.47232 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46378 * 120.00182 * 1 2 3 28 28 H 0.97003 * 120.00252 * 0.02562 * 4 2 1 29 29 H 1.08008 * 125.52168 * 359.97438 * 6 5 4 30 30 H 1.09005 * 109.47070 * 270.03936 * 10 9 7 31 31 H 1.08997 * 109.47643 * 30.03838 * 10 9 7 32 32 H 1.09003 * 109.47197 * 150.04400 * 10 9 7 33 33 H 1.08998 * 109.47461 * 300.00589 * 15 14 12 34 34 H 1.09010 * 109.46796 * 60.00378 * 15 14 12 35 35 H 1.08997 * 109.47687 * 300.00272 * 16 15 14 36 36 H 1.09002 * 109.47191 * 60.00098 * 16 15 14 37 37 H 0.96997 * 120.00743 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5852 -1.1671 0.0011 6 6 4.3951 -0.0872 0.0045 7 7 5.6967 -0.5077 -0.0027 8 1 6.4682 0.0802 -0.0056 9 6 5.7559 -1.8519 -0.0045 10 6 7.0155 -2.6791 -0.0125 11 6 4.4673 -2.3434 0.0023 12 6 4.0590 -3.7553 0.0025 13 8 3.8958 -4.3406 1.0554 14 8 3.8601 -4.3996 -1.1647 15 6 3.4522 -5.7910 -1.0884 16 6 3.2772 -6.3494 -2.5020 17 6 2.8532 -7.7934 -2.4228 18 1 2.7214 -8.2655 -1.4605 19 6 2.6336 -8.5118 -3.5790 20 7 2.2632 -9.7718 -3.5099 21 14 2.8609 -7.6951 -5.2436 22 1 4.2646 -7.8731 -5.6946 23 1 1.9414 -8.3171 -6.2298 24 1 2.5577 -6.2458 -5.1294 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3632 -0.5139 -0.8900 28 1 1.6960 -2.0073 0.0005 29 1 4.0682 0.9423 0.0070 30 1 7.3138 -2.8769 -1.0421 31 1 7.8105 -2.1356 0.4980 32 1 6.8334 -3.6234 0.5007 33 1 4.2155 -6.3652 -0.5633 34 1 2.5077 -5.8637 -0.5491 35 1 2.5141 -5.7754 -3.0276 36 1 4.2218 -6.2768 -3.0410 37 1 2.1090 -10.2773 -4.3232 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763753872.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:58 Heat of formation + Delta-G solvation = -113.156339 kcal Electronic energy + Delta-G solvation = -21339.153024 eV Core-core repulsion = 17888.057371 eV Total energy + Delta-G solvation = -3451.095653 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.51029 -41.04847 -40.43565 -37.61562 -35.90350 -35.37195 -32.96789 -32.50738 -31.95292 -30.08218 -27.68019 -26.83398 -24.33737 -23.17109 -22.56087 -21.07773 -20.55327 -19.41054 -19.03951 -18.09098 -17.59874 -17.16340 -16.84903 -16.74415 -16.51521 -16.25002 -15.55080 -15.21443 -14.87288 -14.81202 -14.39444 -13.98537 -13.79410 -13.62663 -13.42020 -13.29407 -13.13011 -13.10566 -12.85845 -12.51521 -12.47471 -11.96357 -11.81705 -11.65040 -11.51206 -11.43050 -10.98040 -10.80141 -9.51367 -8.80648 -8.33214 -6.41095 0.86414 0.99869 1.05886 1.38809 1.40267 1.52915 1.73085 1.91781 2.05071 2.35052 2.48339 3.01772 3.68890 3.75121 3.85275 4.14436 4.17612 4.20961 4.29014 4.48953 4.62771 4.63361 4.66934 4.68863 4.81126 4.83180 5.04384 5.06648 5.13742 5.29498 5.47849 5.52874 5.66409 5.80776 6.17173 6.38014 6.59175 6.64960 6.70236 7.04700 7.24079 8.82801 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016972 B = 0.004185 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.397407 B = 6689.101135 C = 7503.295410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.506 3.494 3 O -0.570 6.570 4 N -0.645 5.645 5 C 0.075 3.925 6 C -0.024 4.024 7 N -0.520 5.520 8 H 0.442 0.558 9 C 0.114 3.886 10 C -0.096 4.096 11 C -0.265 4.265 12 C 0.547 3.453 13 O -0.534 6.534 14 O -0.354 6.354 15 C 0.090 3.910 16 C -0.002 4.002 17 C -0.541 4.541 18 H 0.037 0.963 19 C 0.015 3.985 20 N -0.944 5.944 21 Si 0.951 3.049 22 H -0.263 1.263 23 H -0.280 1.280 24 H -0.246 1.246 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.417 0.583 29 H 0.199 0.801 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.878 23.371 5.381 24.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.297 3.703 3 O -0.449 6.449 4 N -0.288 5.288 5 C -0.025 4.025 6 C -0.154 4.154 7 N -0.118 5.118 8 H 0.284 0.716 9 C -0.006 4.006 10 C -0.153 4.153 11 C -0.275 4.275 12 C 0.391 3.609 13 O -0.424 6.424 14 O -0.270 6.270 15 C 0.017 3.983 16 C -0.040 4.040 17 C -0.578 4.578 18 H 0.056 0.944 19 C -0.183 4.183 20 N -0.583 5.583 21 Si 0.773 3.227 22 H -0.188 1.188 23 H -0.206 1.206 24 H -0.170 1.170 25 H 0.129 0.871 26 H 0.122 0.878 27 H 0.128 0.872 28 H 0.253 0.747 29 H 0.216 0.784 30 H 0.115 0.885 31 H 0.128 0.872 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.197 23.886 5.576 25.073 hybrid contribution -0.222 -0.879 -0.399 0.990 sum 4.975 23.008 5.177 24.102 Atomic orbital electron populations 1.21949 0.86928 1.06943 1.06522 1.21751 0.92496 0.81791 0.74237 1.90544 1.71265 1.32245 1.50889 1.43173 1.03379 1.10647 1.71597 1.18022 0.83414 0.91870 1.09201 1.22091 0.81682 0.99189 1.12460 1.41296 1.08489 1.05262 1.56793 0.71620 1.20588 0.94719 0.84391 1.00929 1.20634 0.91470 0.98360 1.04881 1.19114 0.94039 0.87702 1.26667 1.20588 0.72260 0.86782 0.81226 1.90820 1.48503 1.69209 1.33851 1.86684 1.78140 1.27892 1.34293 1.23019 0.99226 0.76088 0.99991 1.19454 0.97983 0.94252 0.92300 1.21102 1.47389 0.95404 0.93944 0.94437 1.25893 0.93609 0.95119 1.03716 1.70030 1.47807 1.10133 1.30342 0.85652 0.78963 0.80012 0.78034 1.18804 1.20586 1.16973 0.87141 0.87772 0.87230 0.74668 0.78437 0.88482 0.87182 0.91305 0.92217 0.92111 0.94772 0.94879 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 10.32 71.24 0.74 -1.24 16 2 C 0.51 10.99 7.91 87.66 0.69 11.68 16 3 O -0.57 -15.50 14.30 -3.10 -0.04 -15.55 16 4 N -0.64 -15.56 5.46 -299.22 -1.63 -17.19 16 5 C 0.07 2.07 7.22 39.32 0.28 2.35 16 6 C -0.02 -0.55 10.79 83.17 0.90 0.35 16 7 N -0.52 -8.89 5.90 -181.35 -1.07 -9.96 16 8 H 0.44 3.65 8.96 -92.71 -0.83 2.82 16 9 C 0.11 2.53 7.21 42.07 0.30 2.83 16 10 C -0.10 -1.55 10.25 71.24 0.73 -0.82 16 11 C -0.26 -7.91 6.21 -18.76 -0.12 -8.03 16 12 C 0.55 19.75 7.46 70.11 0.52 20.27 16 13 O -0.53 -21.93 16.90 19.63 0.33 -21.60 16 14 O -0.35 -13.68 10.23 -57.11 -0.58 -14.27 16 15 C 0.09 3.86 5.42 71.98 0.39 4.25 16 16 C 0.00 -0.12 4.42 29.85 0.13 0.02 16 17 C -0.54 -30.98 9.66 25.60 0.25 -30.74 16 18 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 19 C 0.01 0.85 5.47 84.65 0.46 1.31 16 20 N -0.94 -58.13 13.96 21.44 0.30 -57.83 16 21 Si 0.95 43.12 27.47 68.60 1.88 45.00 16 22 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.25 -10.43 6.54 99.48 0.65 -9.78 16 25 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.10 1.12 8.12 -2.39 -0.02 1.10 16 27 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.42 9.20 8.83 -92.71 -0.82 8.39 16 29 H 0.20 4.51 5.86 -2.91 -0.02 4.49 16 30 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.39 7.95 -2.39 -0.02 1.37 16 33 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 35 H 0.03 1.57 7.20 -2.39 -0.02 1.56 16 36 H 0.03 1.51 7.57 -2.39 -0.02 1.49 16 37 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -77.56 326.94 3.88 -73.68 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -0.59 Total: 15.48 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 5.28 Total: 2.24 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -2.40 Total: -84.98 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -0.30 Total: -51.42 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.88 Total: 45.00 kcal Total: -77.56 3.88 -73.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763753872.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.479 kcal (2) G-P(sol) polarization free energy of solvation -77.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds