Wall clock time and date at job start Tue Mar 31 2020 01:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31443 * 1 3 3 Si 1.86790 * 119.99991 * 2 1 4 4 H 1.48507 * 109.47230 * 270.00302 * 3 2 1 5 5 H 1.48498 * 109.47352 * 30.00173 * 3 2 1 6 6 H 1.48502 * 109.47013 * 150.00543 * 3 2 1 7 7 C 1.38759 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99804 * 179.97438 * 7 2 1 9 9 O 1.34916 * 119.99893 * 359.97438 * 7 2 1 10 10 C 1.34311 * 117.00122 * 180.02562 * 9 7 2 11 11 O 1.21217 * 119.99520 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00289 * 179.97438 * 10 9 7 13 13 C 1.53004 * 109.47324 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.47324 * 179.97438 * 13 12 10 15 15 N 1.31127 * 126.54893 * 90.25246 * 14 13 12 16 16 C 1.34503 * 105.61268 * 180.12089 * 15 14 13 17 17 C 1.50704 * 126.28664 * 179.90344 * 16 15 14 18 18 C 1.54887 * 110.48381 * 124.93780 * 17 16 15 19 19 C 1.54893 * 102.74533 * 156.62255 * 18 17 16 20 20 C 1.54266 * 104.19500 * 322.05712 * 19 18 17 21 21 C 1.53872 * 106.60044 * 23.61099 * 20 19 18 22 22 N 1.29940 * 107.42238 * 359.64275 * 16 15 14 23 23 O 1.21304 * 110.25492 * 0.22130 * 22 16 15 24 24 H 0.96999 * 120.00213 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47010 * 60.00312 * 12 10 9 26 26 H 1.08997 * 109.47313 * 299.99648 * 12 10 9 27 27 H 1.09003 * 109.47062 * 59.99775 * 13 12 10 28 28 H 1.09004 * 109.46851 * 300.00390 * 13 12 10 29 29 H 1.09001 * 110.53750 * 2.32590 * 17 16 15 30 30 H 1.09001 * 110.75744 * 274.93157 * 18 17 16 31 31 H 1.09000 * 110.75698 * 38.30975 * 18 17 16 32 32 H 1.09002 * 110.48578 * 203.38190 * 19 18 17 33 33 H 1.09001 * 110.49013 * 80.73631 * 19 18 17 34 34 H 1.09002 * 110.02957 * 264.32709 * 20 19 18 35 35 H 1.09000 * 110.07144 * 142.92082 * 20 19 18 36 36 H 1.09003 * 110.03622 * 240.71485 * 21 20 19 37 37 H 1.09005 * 110.03465 * 119.28158 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4958 2.0464 -1.4001 5 1 1.4459 2.6526 0.7001 6 1 3.5460 1.4400 0.6999 7 6 2.0082 -1.2017 -0.0005 8 1 3.0882 -1.2017 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0650 -3.4966 -0.0005 11 8 3.2755 -3.4331 -0.0010 12 6 1.3808 -4.8393 0.0000 13 6 2.4345 -5.9486 -0.0007 14 6 1.7504 -7.2913 0.0005 15 7 1.3988 -7.9896 -1.0523 16 6 0.8247 -9.1065 -0.5707 17 6 0.2489 -10.2359 -1.3855 18 6 0.8934 -11.5834 -0.9757 19 6 -0.1734 -12.6187 -1.4105 20 6 -1.5179 -11.9363 -1.0844 21 6 -1.2494 -10.4212 -1.0685 22 7 0.8627 -9.0353 0.7262 23 8 1.3907 -8.0003 1.0747 24 1 -0.4850 0.8400 0.0004 25 1 0.7578 -4.9299 -0.8897 26 1 0.7584 -4.9295 0.8903 27 1 3.0580 -5.8581 0.8888 28 1 3.0567 -5.8582 -0.8912 29 1 0.3937 -10.0519 -2.4501 30 1 1.8284 -11.7435 -1.5126 31 1 1.0537 -11.6231 0.1017 32 1 -0.0652 -13.5408 -0.8393 33 1 -0.0969 -12.8196 -2.4791 34 1 -1.8749 -12.2625 -0.1075 35 1 -2.2551 -12.1768 -1.8504 36 1 -1.4761 -10.0121 -0.0839 37 1 -1.8556 -9.9266 -1.8274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764291759.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:04 Heat of formation + Delta-G solvation = -56.169611 kcal Electronic energy + Delta-G solvation = -20854.759188 eV Core-core repulsion = 17406.134666 eV Total energy + Delta-G solvation = -3448.624523 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.69132 -41.04228 -39.34871 -37.59734 -36.77955 -35.34618 -34.28508 -32.44812 -29.98764 -29.72145 -28.16397 -26.46624 -24.90104 -23.59757 -21.77207 -21.41398 -20.69584 -19.87495 -19.22423 -18.73777 -18.38466 -17.07305 -16.80961 -16.68965 -16.36950 -16.19947 -15.46368 -14.92267 -14.57493 -14.45998 -14.41387 -13.64936 -13.61504 -13.45892 -13.34607 -13.07347 -12.76890 -12.40376 -12.26461 -12.22465 -12.16170 -12.13430 -12.10592 -12.03874 -11.95920 -11.70725 -11.37486 -11.11207 -10.85684 -10.68525 -8.52652 -6.32290 0.00125 1.09488 1.31960 1.36764 1.53484 1.63726 1.65696 2.14540 2.46858 2.81334 2.99288 3.00076 3.58808 3.65249 3.66859 3.74171 3.98963 4.07988 4.38531 4.41586 4.45277 4.49682 4.51637 4.64801 4.69783 4.73129 4.78965 4.84332 4.89644 4.92565 5.02436 5.17700 5.20414 5.21042 5.28368 5.43168 5.84437 6.66803 6.93044 7.06753 7.76738 8.68087 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.044996 B = 0.002712 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.130073 B =10323.607855 C =10648.667594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.006 4.006 3 Si 1.017 2.983 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.419 4.419 8 H 0.086 0.914 9 O -0.246 6.246 10 C 0.403 3.597 11 O -0.576 6.576 12 C -0.088 4.088 13 C -0.003 4.003 14 C 0.200 3.800 15 N -0.498 5.498 16 C 0.177 3.823 17 C -0.009 4.009 18 C -0.114 4.114 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.116 4.116 22 N -0.398 5.398 23 O 0.072 5.928 24 H 0.278 0.722 25 H 0.111 0.889 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.527 -21.873 -2.317 22.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.206 4.206 3 Si 0.836 3.164 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.494 4.494 8 H 0.104 0.896 9 O -0.154 6.154 10 C 0.251 3.749 11 O -0.474 6.474 12 C -0.127 4.127 13 C -0.041 4.041 14 C -0.020 4.020 15 N -0.232 5.232 16 C -0.096 4.096 17 C -0.029 4.029 18 C -0.152 4.152 19 C -0.154 4.154 20 C -0.157 4.157 21 C -0.155 4.155 22 N -0.107 5.107 23 O 0.016 5.984 24 H 0.087 0.913 25 H 0.129 0.871 26 H 0.136 0.864 27 H 0.141 0.859 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.767 -22.414 -2.210 22.592 hybrid contribution 0.404 1.144 0.187 1.228 sum -1.363 -21.270 -2.023 21.409 Atomic orbital electron populations 1.70079 1.07705 1.29352 1.47082 1.26544 0.96850 1.02451 0.94769 0.84623 0.77738 0.74577 0.79457 1.18574 1.18708 1.18568 1.21448 0.92279 0.81025 1.54674 0.89592 1.83887 1.40476 1.14312 1.76723 1.23958 0.86562 0.87959 0.76428 1.90550 1.16713 1.88596 1.51504 1.21022 0.98427 0.86118 1.07115 1.19908 0.95686 0.80190 1.08353 1.28769 0.95195 0.97587 0.80425 1.71973 1.16915 1.04963 1.29344 1.26274 0.98518 0.96387 0.88414 1.20688 0.95649 0.88307 0.98227 1.22592 0.99330 0.92141 1.01180 1.22347 0.92931 0.97664 1.02427 1.22123 0.98310 0.92669 1.02598 1.22232 0.92992 0.98552 1.01680 1.74551 1.17160 1.02775 1.16220 1.85301 1.54596 1.22654 1.35891 0.91264 0.87063 0.86365 0.85902 0.86164 0.86847 0.90348 0.92118 0.90150 0.89825 0.91529 0.89878 0.93057 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.05 13.67 21.63 0.30 -52.75 16 2 C -0.01 -0.34 5.49 84.88 0.47 0.13 16 3 Si 1.02 42.76 29.55 68.60 2.03 44.78 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 6 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.42 -24.77 9.65 67.94 0.66 -24.11 16 8 H 0.09 5.11 6.86 -2.91 -0.02 5.09 16 9 O -0.25 -13.98 9.75 14.91 0.15 -13.84 16 10 C 0.40 18.75 7.91 71.23 0.56 19.31 16 11 O -0.58 -28.89 15.22 20.75 0.32 -28.57 16 12 C -0.09 -2.84 5.79 29.85 0.17 -2.67 16 13 C 0.00 -0.07 5.13 29.85 0.15 0.08 16 14 C 0.20 5.44 7.77 88.38 0.69 6.12 16 15 N -0.50 -14.24 11.55 -303.19 -3.50 -17.75 16 16 C 0.18 4.64 6.73 138.46 0.93 5.57 16 17 C -0.01 -0.17 3.39 -10.46 -0.04 -0.20 16 18 C -0.11 -1.82 6.32 31.89 0.20 -1.61 16 19 C -0.12 -1.30 6.83 31.67 0.22 -1.08 16 20 C -0.12 -1.48 6.80 31.32 0.21 -1.26 16 21 C -0.12 -1.99 6.36 31.32 0.20 -1.79 16 22 N -0.40 -11.17 11.84 -60.31 -0.71 -11.89 16 23 O 0.07 1.99 11.31 74.85 0.85 2.84 16 24 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 25 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 26 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 27 H 0.12 3.03 8.10 -2.39 -0.02 3.01 16 28 H 0.12 3.25 8.10 -2.38 -0.02 3.23 16 29 H 0.11 2.00 8.14 -2.39 -0.02 1.99 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.15 7.89 -2.39 -0.02 1.13 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.05 1.07 7.72 -2.39 -0.02 1.05 16 37 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -71.22 322.63 4.92 -66.30 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.08 Total: 12.40 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 4.42 Total: -1.52 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -3.92 Total: -82.38 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: 1.31 Total: -39.57 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -71.22 4.92 -66.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764291759.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.132 kcal (2) G-P(sol) polarization free energy of solvation -71.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds