Wall clock time and date at job start Tue Mar 31 2020 01:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99649 * 2 1 4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46726 * 64.99720 * 4 3 2 6 6 C 1.35904 * 116.99628 * 180.02562 * 5 4 3 7 7 C 1.38758 * 120.05922 * 359.72826 * 6 5 4 8 8 C 1.38121 * 119.94303 * 179.69478 * 7 6 5 9 9 C 1.38284 * 120.05670 * 0.60266 * 8 7 6 10 10 C 1.38245 * 120.11162 * 359.67148 * 9 8 7 11 11 C 1.50705 * 119.97268 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.46973 * 269.97932 * 11 10 9 13 13 O 1.21211 * 120.00133 * 0.02562 * 12 11 10 14 14 O 1.34306 * 119.99679 * 179.97438 * 12 11 10 15 15 C 1.34921 * 116.99927 * 179.97438 * 14 12 11 16 16 H 1.08000 * 119.99980 * 0.02562 * 15 14 12 17 17 C 1.38759 * 120.00149 * 179.97438 * 15 14 12 18 18 N 1.31442 * 119.99757 * 180.02562 * 17 15 14 19 19 Si 1.86790 * 119.99749 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47181 * 89.99843 * 19 17 15 21 21 H 1.48504 * 109.47436 * 209.99938 * 19 17 15 22 22 H 1.48507 * 109.47665 * 329.99748 * 19 17 15 23 23 C 1.38173 * 120.05607 * 0.02881 * 10 9 8 24 24 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 25 25 H 1.08990 * 109.47463 * 299.99806 * 1 2 3 26 26 H 1.08992 * 109.47069 * 60.00902 * 1 2 3 27 27 H 1.09002 * 109.47445 * 59.99875 * 3 2 1 28 28 H 1.09002 * 109.47167 * 299.99793 * 3 2 1 29 29 H 1.09002 * 109.47398 * 184.99964 * 4 3 2 30 30 H 1.09001 * 109.47194 * 305.00145 * 4 3 2 31 31 H 1.08003 * 120.02200 * 359.97438 * 7 6 5 32 32 H 1.07998 * 119.96674 * 180.29445 * 8 7 6 33 33 H 1.08003 * 119.94493 * 179.69558 * 9 8 7 34 34 H 1.08999 * 109.46727 * 29.97964 * 11 10 9 35 35 H 1.08992 * 109.46868 * 149.98166 * 11 10 9 36 36 H 0.96999 * 119.99362 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.02728 * 180.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5794 -1.2201 6 6 5.3030 0.3976 -1.3807 7 6 6.1834 0.7990 -0.3861 8 6 7.5415 0.6073 -0.5491 9 6 8.0250 0.0274 -1.7076 10 6 7.1504 -0.3682 -2.7024 11 6 7.6807 -1.0005 -3.9635 12 6 7.9595 0.0723 -4.9845 13 8 7.7488 1.2351 -4.7147 14 8 8.4422 -0.2600 -6.1929 15 6 8.6692 0.7483 -7.0602 16 1 8.4633 1.7677 -6.7691 17 6 9.1682 0.4757 -8.3260 18 7 9.3897 1.4581 -9.1707 19 14 9.5250 -1.2874 -8.8293 20 1 8.3133 -1.8797 -9.4507 21 1 10.6425 -1.3066 -9.8072 22 1 9.9030 -2.0778 -7.6302 23 6 5.7904 -0.1844 -2.5416 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5137 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.9783 2.1768 0.0902 30 1 3.8508 0.5687 0.8427 31 1 5.8065 1.2568 0.5166 32 1 8.2266 0.9153 0.2268 33 1 9.0877 -0.1171 -1.8352 34 1 8.6023 -1.5382 -3.7405 35 1 6.9411 -1.6960 -4.3599 36 1 9.7382 1.2674 -10.0556 37 1 5.1076 -0.4940 -3.3189 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772388044.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:51 Heat of formation + Delta-G solvation = -136.190468 kcal Electronic energy + Delta-G solvation = -20843.214171 eV Core-core repulsion = 17358.826932 eV Total energy + Delta-G solvation = -3484.387239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.18385 -39.16499 -38.24539 -37.23738 -35.27218 -32.43169 -32.18479 -31.40213 -29.38311 -27.86685 -26.63737 -25.16581 -23.47552 -22.42043 -21.26003 -19.73784 -17.99850 -17.71228 -17.10921 -16.63461 -16.40816 -16.03419 -15.68822 -15.30722 -15.12990 -14.84175 -14.62277 -14.10317 -13.68518 -13.25385 -13.05025 -12.82391 -12.48637 -12.33276 -12.01765 -11.94149 -11.81890 -11.57173 -11.38706 -11.07444 -10.90861 -10.72302 -10.42054 -10.31733 -10.03853 -9.65511 -9.15208 -8.64375 -8.63357 -8.03535 -6.31980 -4.07543 1.44835 1.63590 3.10168 3.18844 3.27439 3.39376 3.39936 3.46995 3.81501 4.28344 4.45573 4.56827 4.77503 4.84957 4.88491 4.97921 5.00051 5.05308 5.09671 5.14080 5.19561 5.30320 5.36675 5.48177 5.50337 5.64881 5.83164 5.90644 6.16679 6.40988 6.44104 6.56114 6.76321 6.79729 6.90890 7.49822 7.79703 8.09126 8.68785 9.06810 9.74548 10.76833 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.024304 B = 0.003238 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.810212 B = 8646.036280 C = 9186.788064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.062 3.938 5 O -0.308 6.308 6 C 0.128 3.872 7 C -0.214 4.214 8 C -0.082 4.082 9 C -0.140 4.140 10 C -0.019 4.019 11 C -0.071 4.071 12 C 0.412 3.588 13 O -0.530 6.530 14 O -0.254 6.254 15 C -0.380 4.380 16 H 0.108 0.892 17 C 0.064 3.936 18 N -0.878 5.878 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.133 4.133 24 H 0.087 0.913 25 H 0.040 0.960 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.278 0.722 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.038 -4.386 20.413 24.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.222 6.222 6 C 0.083 3.917 7 C -0.232 4.232 8 C -0.100 4.100 9 C -0.158 4.158 10 C -0.019 4.019 11 C -0.109 4.109 12 C 0.257 3.743 13 O -0.424 6.424 14 O -0.163 6.163 15 C -0.456 4.456 16 H 0.126 0.874 17 C -0.139 4.139 18 N -0.517 5.517 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.184 1.184 23 C -0.151 4.151 24 H 0.105 0.895 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.089 0.911 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.067 -4.234 20.132 23.850 hybrid contribution 0.061 -0.150 -0.207 0.263 sum -12.006 -4.383 19.925 23.672 Atomic orbital electron populations 1.22759 0.80884 1.02981 0.99951 1.87973 1.19775 1.27142 1.95407 1.22588 0.91702 0.85745 1.01411 1.22792 0.93522 0.98272 0.86791 1.86121 1.20297 1.77005 1.38734 1.18856 0.82068 0.96195 0.94586 1.21125 0.94346 1.07839 0.99924 1.20817 0.94463 0.97382 0.97306 1.20920 0.99596 1.01303 0.93957 1.19139 0.92337 0.96406 0.94041 1.20152 1.03602 0.96528 0.90580 1.22753 0.79198 0.89257 0.83107 1.90628 1.51485 1.21079 1.79240 1.83515 1.69985 1.40335 1.22512 1.20643 1.43865 0.88345 0.92727 0.87393 1.24547 0.95667 0.99319 0.94368 1.69614 1.43205 1.31790 1.07117 0.86213 0.78294 0.83523 0.78870 1.19898 1.20852 1.18377 1.20236 0.95023 1.03388 0.96502 0.89485 0.94161 0.93839 0.91212 0.91913 0.90461 0.91214 0.85939 0.85923 0.85868 0.87664 0.87750 0.91123 0.85255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.16 10.67 -40.09 -0.43 -4.58 16 3 C 0.06 0.54 6.32 37.16 0.23 0.78 16 4 C 0.06 0.62 5.12 37.16 0.19 0.81 16 5 O -0.31 -4.43 10.10 -24.29 -0.25 -4.67 16 6 C 0.13 1.95 6.69 -39.22 -0.26 1.69 16 7 C -0.21 -2.83 9.04 -39.43 -0.36 -3.18 16 8 C -0.08 -1.09 10.04 -39.61 -0.40 -1.48 16 9 C -0.14 -2.12 9.70 -39.56 -0.38 -2.50 16 10 C -0.02 -0.32 4.37 -104.64 -0.46 -0.77 16 11 C -0.07 -1.21 5.94 -29.03 -0.17 -1.38 16 12 C 0.41 9.83 7.90 36.01 0.28 10.11 16 13 O -0.53 -14.46 15.27 -19.05 -0.29 -14.75 16 14 O -0.25 -6.81 8.58 -20.69 -0.18 -6.99 16 15 C -0.38 -11.52 10.10 30.92 0.31 -11.21 16 16 H 0.11 3.62 7.09 -52.49 -0.37 3.25 16 17 C 0.06 1.87 5.49 -17.53 -0.10 1.77 16 18 N -0.88 -26.46 13.96 55.48 0.77 -25.69 16 19 Si 0.91 21.66 28.62 -169.99 -4.86 16.80 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 23 C -0.13 -2.21 9.64 -39.43 -0.38 -2.59 16 24 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 25 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.64 7.65 -51.93 -0.40 0.24 16 30 H 0.07 0.64 7.67 -51.93 -0.40 0.24 16 31 H 0.12 1.25 6.30 -52.48 -0.33 0.92 16 32 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.12 1.69 8.06 -52.48 -0.42 1.26 16 34 H 0.11 1.51 8.08 -51.93 -0.42 1.09 16 35 H 0.10 1.54 8.08 -51.93 -0.42 1.12 16 36 H 0.28 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.13 2.09 8.06 -52.49 -0.42 1.66 16 LS Contribution 327.95 15.07 4.94 4.94 Total: -1.00 -35.96 327.95 -5.52 -41.48 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -4.86 Total: 0.10 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -0.37 Total: -6.63 kcal Atomic # 7 Polarization: -26.46 SS G_CDS: 0.77 Total: -25.69 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -1.14 Total: -30.99 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.86 Total: 16.80 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.96 -5.52 -41.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772388044.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.715 kcal (2) G-P(sol) polarization free energy of solvation -35.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds