Wall clock time and date at job start Tue Mar 31 2020 01:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99649 * 2 1 4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46726 * 64.99720 * 4 3 2 6 6 C 1.35904 * 116.99628 * 180.02562 * 5 4 3 7 7 C 1.38758 * 120.05922 * 359.72826 * 6 5 4 8 8 C 1.38121 * 119.94303 * 179.69478 * 7 6 5 9 9 C 1.38284 * 120.05670 * 0.60266 * 8 7 6 10 10 C 1.38245 * 120.11162 * 359.67148 * 9 8 7 11 11 C 1.50705 * 119.97268 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.46973 * 269.97932 * 11 10 9 13 13 O 1.21211 * 120.00133 * 0.02562 * 12 11 10 14 14 O 1.34306 * 119.99679 * 179.97438 * 12 11 10 15 15 C 1.34921 * 116.99927 * 179.97438 * 14 12 11 16 16 H 1.08000 * 119.99980 * 0.02562 * 15 14 12 17 17 C 1.38759 * 120.00149 * 179.97438 * 15 14 12 18 18 N 1.31442 * 119.99757 * 180.02562 * 17 15 14 19 19 Si 1.86790 * 119.99749 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47181 * 89.99843 * 19 17 15 21 21 H 1.48504 * 109.47436 * 209.99938 * 19 17 15 22 22 H 1.48507 * 109.47665 * 329.99748 * 19 17 15 23 23 C 1.38173 * 120.05607 * 0.02881 * 10 9 8 24 24 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 25 25 H 1.08990 * 109.47463 * 299.99806 * 1 2 3 26 26 H 1.08992 * 109.47069 * 60.00902 * 1 2 3 27 27 H 1.09002 * 109.47445 * 59.99875 * 3 2 1 28 28 H 1.09002 * 109.47167 * 299.99793 * 3 2 1 29 29 H 1.09002 * 109.47398 * 184.99964 * 4 3 2 30 30 H 1.09001 * 109.47194 * 305.00145 * 4 3 2 31 31 H 1.08003 * 120.02200 * 359.97438 * 7 6 5 32 32 H 1.07998 * 119.96674 * 180.29445 * 8 7 6 33 33 H 1.08003 * 119.94493 * 179.69558 * 9 8 7 34 34 H 1.08999 * 109.46727 * 29.97964 * 11 10 9 35 35 H 1.08992 * 109.46868 * 149.98166 * 11 10 9 36 36 H 0.96999 * 119.99362 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.02728 * 180.02562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 8 3.9658 0.5794 -1.2201 6 6 5.3030 0.3976 -1.3807 7 6 6.1834 0.7990 -0.3861 8 6 7.5415 0.6073 -0.5491 9 6 8.0250 0.0274 -1.7076 10 6 7.1504 -0.3682 -2.7024 11 6 7.6807 -1.0005 -3.9635 12 6 7.9595 0.0723 -4.9845 13 8 7.7488 1.2351 -4.7147 14 8 8.4422 -0.2600 -6.1929 15 6 8.6692 0.7483 -7.0602 16 1 8.4633 1.7677 -6.7691 17 6 9.1682 0.4757 -8.3260 18 7 9.3897 1.4581 -9.1707 19 14 9.5250 -1.2874 -8.8293 20 1 8.3133 -1.8797 -9.4507 21 1 10.6425 -1.3066 -9.8072 22 1 9.9030 -2.0778 -7.6302 23 6 5.7904 -0.1844 -2.5416 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5137 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.9783 2.1768 0.0902 30 1 3.8508 0.5687 0.8427 31 1 5.8065 1.2568 0.5166 32 1 8.2266 0.9153 0.2268 33 1 9.0877 -0.1171 -1.8352 34 1 8.6023 -1.5382 -3.7405 35 1 6.9411 -1.6960 -4.3599 36 1 9.7382 1.2674 -10.0556 37 1 5.1076 -0.4940 -3.3189 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772388044.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:50 Heat of formation + Delta-G solvation = -160.291704 kcal Electronic energy + Delta-G solvation = -20844.259279 eV Core-core repulsion = 17358.826932 eV Total energy + Delta-G solvation = -3485.432347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.44217 -40.88252 -39.15246 -38.26100 -37.25392 -34.50223 -33.65751 -32.26004 -30.37502 -29.30794 -27.33851 -27.09189 -24.38194 -23.53008 -22.61087 -21.28896 -20.14121 -18.87953 -18.58694 -17.82605 -17.40359 -17.15969 -16.77758 -16.61018 -16.49277 -16.15260 -15.86801 -15.64534 -15.09239 -14.58096 -14.28165 -14.11552 -14.03089 -13.59150 -13.45104 -13.16736 -12.86734 -12.62798 -12.49237 -12.35022 -12.32179 -12.23823 -11.85231 -11.81108 -11.73367 -11.13011 -10.82599 -10.68721 -9.83073 -9.13932 -8.53772 -6.40845 0.28562 0.50788 1.31853 1.35622 1.55230 1.60641 2.17720 2.28877 2.42436 2.78490 2.92152 2.97985 3.62809 3.82588 3.97747 4.08754 4.09736 4.23554 4.31760 4.36262 4.40141 4.48831 4.51471 4.52475 4.54432 4.60859 4.69061 4.82290 4.85204 5.06365 5.31157 5.45660 5.49952 5.62354 5.80383 5.91642 6.16705 6.48062 6.56176 6.83772 7.60901 8.59564 Molecular weight = 280.12amu Principal moments of inertia in cm(-1) A = 0.024304 B = 0.003238 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.810212 B = 8646.036280 C = 9186.788064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.060 3.940 4 C 0.051 3.949 5 O -0.330 6.330 6 C 0.117 3.883 7 C -0.208 4.208 8 C -0.079 4.079 9 C -0.154 4.154 10 C -0.042 4.042 11 C -0.059 4.059 12 C 0.412 3.588 13 O -0.570 6.570 14 O -0.258 6.258 15 C -0.408 4.408 16 H 0.054 0.946 17 C 0.013 3.987 18 N -0.921 5.921 19 Si 0.987 3.013 20 H -0.261 1.261 21 H -0.266 1.266 22 H -0.246 1.246 23 C -0.160 4.160 24 H 0.092 0.908 25 H 0.060 0.940 26 H 0.044 0.956 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.130 0.870 36 H 0.289 0.711 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.986 -6.125 22.313 26.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.016 4.016 4 C -0.023 4.023 5 O -0.245 6.245 6 C 0.072 3.928 7 C -0.227 4.227 8 C -0.097 4.097 9 C -0.172 4.172 10 C -0.042 4.042 11 C -0.096 4.096 12 C 0.259 3.741 13 O -0.465 6.465 14 O -0.168 6.168 15 C -0.484 4.484 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.561 5.561 19 Si 0.806 3.194 20 H -0.185 1.185 21 H -0.191 1.191 22 H -0.169 1.169 23 C -0.179 4.179 24 H 0.111 0.889 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.122 0.878 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.174 0.826 32 H 0.175 0.825 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.148 0.852 36 H 0.099 0.901 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.034 -5.953 22.053 25.819 hybrid contribution -0.076 0.541 -0.636 0.838 sum -12.111 -5.413 21.417 25.192 Atomic orbital electron populations 1.22922 0.79360 1.03777 1.00998 1.87921 1.21622 1.28452 1.95658 1.22741 0.90826 0.85323 1.02739 1.23166 0.94543 0.99148 0.85487 1.86102 1.19899 1.77447 1.41042 1.19021 0.82947 0.96150 0.94707 1.21524 0.94148 1.06635 1.00366 1.21252 0.95132 0.95964 0.97348 1.21220 1.00110 1.01480 0.94431 1.19206 0.92664 0.97957 0.94379 1.20308 1.06030 0.94584 0.88644 1.24277 0.76462 0.90494 0.82829 1.90605 1.52592 1.23601 1.79730 1.83529 1.71126 1.38814 1.23344 1.20301 1.46348 0.87178 0.94592 0.92850 1.25633 0.94399 1.05110 0.93524 1.69718 1.43641 1.34772 1.07955 0.85032 0.78954 0.76305 0.79131 1.18512 1.19087 1.16901 1.20361 0.95256 1.04867 0.97408 0.88949 0.92141 0.93715 0.87834 0.92493 0.88569 0.90120 0.82650 0.82497 0.84680 0.84235 0.85166 0.90122 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.42 -8.60 10.67 -144.34 -1.54 -10.14 16 3 C 0.06 0.95 6.32 71.98 0.45 1.40 16 4 C 0.05 0.93 5.12 71.98 0.37 1.30 16 5 O -0.33 -9.38 10.10 -87.83 -0.89 -10.27 16 6 C 0.12 3.49 6.69 22.51 0.15 3.64 16 7 C -0.21 -5.04 9.04 22.37 0.20 -4.83 16 8 C -0.08 -1.90 10.04 22.25 0.22 -1.68 16 9 C -0.15 -4.44 9.70 22.28 0.22 -4.22 16 10 C -0.04 -1.37 4.37 -19.88 -0.09 -1.46 16 11 C -0.06 -1.94 5.94 29.10 0.17 -1.76 16 12 C 0.41 19.99 7.90 71.24 0.56 20.56 16 13 O -0.57 -32.39 15.27 20.77 0.32 -32.07 16 14 O -0.26 -14.01 8.58 14.91 0.13 -13.88 16 15 C -0.41 -25.76 10.10 67.94 0.69 -25.08 16 16 H 0.05 3.85 7.09 -2.91 -0.02 3.83 16 17 C 0.01 0.75 5.49 84.88 0.47 1.22 16 18 N -0.92 -56.89 13.96 21.63 0.30 -56.59 16 19 Si 0.99 44.09 28.62 68.60 1.96 46.06 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 23 C -0.16 -5.38 9.64 22.37 0.22 -5.16 16 24 H 0.09 1.06 8.14 -2.38 -0.02 1.05 16 25 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.10 1.35 7.65 -2.39 -0.02 1.33 16 30 H 0.08 1.28 7.67 -2.39 -0.02 1.26 16 31 H 0.16 2.61 6.30 -2.91 -0.02 2.60 16 32 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 33 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 34 H 0.14 3.65 8.08 -2.39 -0.02 3.63 16 35 H 0.13 3.62 8.08 -2.39 -0.02 3.60 16 36 H 0.29 16.04 8.31 -92.71 -0.77 15.27 16 37 H 0.12 4.05 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -82.51 327.95 6.23 -76.28 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 1.07 Total: 15.11 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 4.88 Total: -14.50 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.30 Total: -56.59 kcal Atomic # 8 Polarization: -64.38 SS G_CDS: -1.98 Total: -66.36 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.96 Total: 46.06 kcal Total: -82.51 6.23 -76.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772388044.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.010 kcal (2) G-P(sol) polarization free energy of solvation -82.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds