Wall clock time and date at job start Tue Mar 31 2020 01:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00297 * 2 1 4 4 H 1.48491 * 109.47473 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47099 * 300.00549 * 3 2 1 6 6 H 1.48498 * 109.47119 * 59.99624 * 3 2 1 7 7 C 1.38817 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00292 * 157.93247 * 7 2 1 9 9 N 1.36943 * 119.99408 * 337.93451 * 7 2 1 10 10 C 1.46496 * 120.00274 * 324.92321 * 9 7 2 11 11 C 1.52997 * 109.47499 * 270.00442 * 10 9 7 12 12 C 1.52998 * 109.47232 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47170 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00070 * 179.97438 * 13 12 11 15 15 O 1.21281 * 120.00051 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99813 * 179.97438 * 14 13 12 17 17 F 1.39901 * 109.46916 * 180.02562 * 16 14 13 18 18 F 1.39898 * 109.47302 * 299.99812 * 16 14 13 19 19 F 1.39899 * 109.47312 * 60.00175 * 16 14 13 20 20 C 1.46504 * 119.99489 * 144.93086 * 9 7 2 21 21 C 1.53000 * 117.49921 * 3.23472 * 20 9 7 22 22 C 1.52998 * 117.49703 * 294.57074 * 20 9 7 23 23 H 0.96995 * 119.99672 * 355.90991 * 1 2 3 24 24 H 1.09005 * 109.47045 * 30.00589 * 10 9 7 25 25 H 1.08998 * 109.47092 * 149.99943 * 10 9 7 26 26 H 1.09005 * 109.47091 * 300.00118 * 11 10 9 27 27 H 1.09004 * 109.46959 * 59.99639 * 11 10 9 28 28 H 1.09005 * 109.47181 * 300.00066 * 12 11 10 29 29 H 1.08992 * 109.47145 * 60.00006 * 12 11 10 30 30 H 0.96999 * 119.99950 * 359.97438 * 13 12 11 31 31 H 1.09004 * 115.54877 * 148.90350 * 20 9 7 32 32 H 1.08998 * 117.50153 * 359.97438 * 21 20 9 33 33 H 1.08995 * 117.49708 * 145.02504 * 21 20 9 34 34 H 1.08995 * 117.49988 * 214.98174 * 22 20 9 35 35 H 1.08997 * 117.49880 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3519 9 7 1.4007 -2.3448 0.4445 10 6 0.4457 -2.2813 1.5535 11 6 1.1887 -2.4675 2.8779 12 6 0.1913 -2.4005 4.0361 13 7 0.9029 -2.5781 5.3043 14 6 0.2228 -2.5551 6.4676 15 8 -0.9783 -2.3868 6.4647 16 6 0.9548 -2.7384 7.7721 17 9 0.0428 -2.6770 8.8312 18 9 1.5925 -3.9836 7.7781 19 9 1.9085 -1.7253 7.9181 20 6 1.7039 -3.6309 -0.1884 21 6 2.7655 -3.6431 -1.2902 22 6 1.2873 -3.8149 -1.6490 23 1 -0.4849 0.8379 0.0599 24 1 -0.0520 -1.3115 1.5493 25 1 -0.2968 -3.0711 1.4393 26 1 1.6864 -3.4373 2.8821 27 1 1.9312 -1.6776 2.9921 28 1 -0.3060 -1.4305 4.0317 29 1 -0.5514 -3.1900 3.9221 30 1 1.8636 -2.7123 5.3067 31 1 1.6465 -4.5015 0.4649 32 1 3.2380 -2.6944 -1.5444 33 1 3.4061 -4.5220 -1.3619 34 1 0.9562 -4.8067 -1.9568 35 1 0.7872 -2.9795 -2.1389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774592323.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:43 Heat of formation + Delta-G solvation = -143.059510 kcal Electronic energy + Delta-G solvation = -21964.684588 eV Core-core repulsion = 17970.435496 eV Total energy + Delta-G solvation = -3994.249092 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.51336 -48.04286 -47.99894 -39.90944 -37.23725 -35.71082 -33.75916 -31.84154 -29.87481 -27.89147 -25.29725 -23.59516 -21.55924 -21.52617 -21.15531 -19.80238 -19.10703 -18.96463 -18.74732 -16.61644 -16.10279 -15.78031 -15.48188 -15.12159 -14.83499 -14.74495 -14.59156 -14.41418 -14.13912 -14.12869 -14.11648 -13.63488 -13.42394 -12.76143 -12.36170 -12.04435 -11.70759 -11.15156 -10.95743 -10.84720 -10.76341 -10.54021 -10.24643 -10.07281 -9.74914 -9.66084 -9.36708 -9.33354 -8.55423 -6.67016 -5.88046 -3.48796 1.67377 1.76901 2.90925 3.27926 3.38338 3.39694 3.52336 3.93328 3.95200 4.36732 4.85959 5.01642 5.24343 5.41854 5.51133 5.78160 5.84903 5.86172 6.05527 6.17169 6.22985 6.41719 6.45597 6.53537 6.61020 6.88111 6.98077 6.99677 7.16921 7.47347 7.55169 7.72280 8.37971 9.05705 9.68624 10.23921 11.07916 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.004137 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.481857 B = 6767.283679 C = 7512.390580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.011 3.989 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.551 5.551 10 C 0.149 3.851 11 C -0.148 4.148 12 C 0.117 3.883 13 N -0.692 5.692 14 C 0.478 3.522 15 O -0.482 6.482 16 C 0.449 3.551 17 F -0.156 7.156 18 F -0.170 7.170 19 F -0.168 7.168 20 C 0.119 3.881 21 C -0.196 4.196 22 C -0.221 4.221 23 H 0.255 0.745 24 H 0.104 0.896 25 H 0.030 0.970 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.409 0.591 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.180 -6.573 11.553 13.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.189 4.189 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.388 4.388 8 H 0.085 0.915 9 N -0.267 5.267 10 C 0.022 3.978 11 C -0.188 4.188 12 C -0.005 4.005 13 N -0.343 5.343 14 C 0.255 3.745 15 O -0.355 6.355 16 C 0.391 3.609 17 F -0.137 7.137 18 F -0.151 7.151 19 F -0.150 7.150 20 C 0.010 3.990 21 C -0.234 4.234 22 C -0.262 4.262 23 H 0.065 0.935 24 H 0.121 0.879 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.245 0.755 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.181 -6.284 11.492 13.279 hybrid contribution 1.075 0.758 0.229 1.335 sum 3.256 -5.527 11.721 13.362 Atomic orbital electron populations 1.70043 1.05507 1.26085 1.50824 1.25132 0.94979 0.98777 1.00046 0.86363 0.79800 0.83996 0.77474 1.20027 1.21578 1.21330 1.19118 0.94473 0.85427 1.39821 0.91521 1.43398 1.49119 1.01485 1.32736 1.20855 0.90501 1.03509 0.82945 1.22524 0.98843 1.01781 0.95675 1.21779 0.95914 1.02786 0.80037 1.46171 1.12436 1.69843 1.05841 1.20236 0.88473 0.81061 0.84763 1.90878 1.12611 1.46715 1.85324 1.20426 0.78018 0.74829 0.87654 1.93254 1.66449 1.95893 1.58148 1.93255 1.82613 1.42386 1.96854 1.93266 1.65274 1.60083 1.96362 1.21234 1.00454 0.90153 0.87127 1.23036 0.91935 1.01849 1.06604 1.23362 0.97360 1.00674 1.04842 0.93470 0.87872 0.95153 0.92740 0.91134 0.90304 0.90770 0.75515 0.89571 0.88494 0.90778 0.91223 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.91 11.33 55.49 0.63 -23.28 16 2 C 0.01 0.29 4.96 -17.43 -0.09 0.20 16 3 Si 0.89 20.47 29.61 -169.99 -5.03 15.44 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.26 -6.53 8.63 -15.05 -0.13 -6.66 16 8 H 0.07 1.70 6.55 -52.49 -0.34 1.36 16 9 N -0.55 -12.56 2.78 -165.66 -0.46 -13.02 16 10 C 0.15 3.08 5.34 -4.05 -0.02 3.06 16 11 C -0.15 -2.40 5.65 -26.73 -0.15 -2.55 16 12 C 0.12 1.67 5.67 -4.04 -0.02 1.65 16 13 N -0.69 -8.40 5.56 -60.30 -0.33 -8.74 16 14 C 0.48 6.32 7.36 -10.99 -0.08 6.24 16 15 O -0.48 -7.99 16.61 5.56 0.09 -7.90 16 16 C 0.45 5.10 3.43 36.01 0.12 5.22 16 17 F -0.16 -1.94 16.92 2.25 0.04 -1.90 16 18 F -0.17 -1.78 17.30 2.25 0.04 -1.74 16 19 F -0.17 -1.84 17.30 2.25 0.04 -1.80 16 20 C 0.12 2.39 6.56 -67.93 -0.45 1.95 16 21 C -0.20 -3.68 9.80 -26.69 -0.26 -3.94 16 22 C -0.22 -4.34 10.36 -26.69 -0.28 -4.61 16 23 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 24 H 0.10 2.47 5.36 -51.93 -0.28 2.19 16 25 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.41 4.00 8.47 -40.82 -0.35 3.65 16 31 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 32 H 0.10 2.00 6.37 -51.93 -0.33 1.67 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 314.76 15.07 4.74 4.74 Total: -1.00 -27.81 314.76 -5.84 -33.64 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -4.23 Total: 4.00 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -1.35 Total: 0.56 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: -0.17 Total: -45.04 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: 0.09 Total: -7.90 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.12 Total: -5.44 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.81 -5.84 -33.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774592323.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.416 kcal (2) G-P(sol) polarization free energy of solvation -27.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds