Wall clock time and date at job start Tue Mar 31 2020 01:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00297 * 2 1 4 4 H 1.48491 * 109.47473 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47099 * 300.00549 * 3 2 1 6 6 H 1.48498 * 109.47119 * 59.99624 * 3 2 1 7 7 C 1.38817 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00292 * 157.93247 * 7 2 1 9 9 N 1.36943 * 119.99408 * 337.93451 * 7 2 1 10 10 C 1.46496 * 120.00274 * 324.92321 * 9 7 2 11 11 C 1.52997 * 109.47499 * 270.00442 * 10 9 7 12 12 C 1.52998 * 109.47232 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47170 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00070 * 179.97438 * 13 12 11 15 15 O 1.21281 * 120.00051 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99813 * 179.97438 * 14 13 12 17 17 F 1.39901 * 109.46916 * 180.02562 * 16 14 13 18 18 F 1.39898 * 109.47302 * 299.99812 * 16 14 13 19 19 F 1.39899 * 109.47312 * 60.00175 * 16 14 13 20 20 C 1.46504 * 119.99489 * 144.93086 * 9 7 2 21 21 C 1.53000 * 117.49921 * 3.23472 * 20 9 7 22 22 C 1.52998 * 117.49703 * 294.57074 * 20 9 7 23 23 H 0.96995 * 119.99672 * 355.90991 * 1 2 3 24 24 H 1.09005 * 109.47045 * 30.00589 * 10 9 7 25 25 H 1.08998 * 109.47092 * 149.99943 * 10 9 7 26 26 H 1.09005 * 109.47091 * 300.00118 * 11 10 9 27 27 H 1.09004 * 109.46959 * 59.99639 * 11 10 9 28 28 H 1.09005 * 109.47181 * 300.00066 * 12 11 10 29 29 H 1.08992 * 109.47145 * 60.00006 * 12 11 10 30 30 H 0.96999 * 119.99950 * 359.97438 * 13 12 11 31 31 H 1.09004 * 115.54877 * 148.90350 * 20 9 7 32 32 H 1.08998 * 117.50153 * 359.97438 * 21 20 9 33 33 H 1.08995 * 117.49708 * 145.02504 * 21 20 9 34 34 H 1.08995 * 117.49988 * 214.98174 * 22 20 9 35 35 H 1.08997 * 117.49880 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3519 9 7 1.4007 -2.3448 0.4445 10 6 0.4457 -2.2813 1.5535 11 6 1.1887 -2.4675 2.8779 12 6 0.1913 -2.4005 4.0361 13 7 0.9029 -2.5781 5.3043 14 6 0.2228 -2.5551 6.4676 15 8 -0.9783 -2.3868 6.4647 16 6 0.9548 -2.7384 7.7721 17 9 0.0428 -2.6770 8.8312 18 9 1.5925 -3.9836 7.7781 19 9 1.9085 -1.7253 7.9181 20 6 1.7039 -3.6309 -0.1884 21 6 2.7655 -3.6431 -1.2902 22 6 1.2873 -3.8149 -1.6490 23 1 -0.4849 0.8379 0.0599 24 1 -0.0520 -1.3115 1.5493 25 1 -0.2968 -3.0711 1.4393 26 1 1.6864 -3.4373 2.8821 27 1 1.9312 -1.6776 2.9921 28 1 -0.3060 -1.4305 4.0317 29 1 -0.5514 -3.1900 3.9221 30 1 1.8636 -2.7123 5.3067 31 1 1.6465 -4.5015 0.4649 32 1 3.2380 -2.6944 -1.5444 33 1 3.4061 -4.5220 -1.3619 34 1 0.9562 -4.8067 -1.9568 35 1 0.7872 -2.9795 -2.1389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774592323.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:42 Heat of formation + Delta-G solvation = -159.720356 kcal Electronic energy + Delta-G solvation = -21965.407056 eV Core-core repulsion = 17970.435496 eV Total energy + Delta-G solvation = -3994.971560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -51.43763 -48.94437 -48.93416 -41.04112 -38.85796 -36.96663 -35.36730 -33.47451 -31.44045 -29.07441 -26.94267 -25.11440 -23.06339 -22.61626 -22.56018 -21.46964 -20.19111 -19.88221 -19.72483 -18.28160 -17.40236 -17.21773 -16.76998 -16.57905 -16.06854 -15.86716 -15.67447 -15.62480 -15.32262 -15.06414 -15.04135 -15.03285 -14.56513 -14.35645 -13.94509 -13.67092 -13.27517 -12.81510 -12.61461 -12.47278 -12.33144 -12.00494 -11.87152 -11.59743 -11.39754 -11.27989 -10.87131 -10.50865 -10.45877 -8.52334 -7.78673 -5.43543 0.60683 0.74148 1.43946 1.49618 1.57433 1.94514 2.49298 2.54400 2.98139 3.00640 3.16591 3.42740 3.50757 4.14968 4.16126 4.34730 4.45338 4.54566 4.60111 4.70579 4.76160 4.97003 5.05921 5.09119 5.16126 5.38200 5.48219 5.56990 5.71185 5.85142 5.89442 6.46298 6.48236 7.17163 7.87924 8.36391 9.11921 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.004137 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.481857 B = 6767.283679 C = 7512.390580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.036 4.036 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.298 1.298 6 H -0.288 1.288 7 C -0.255 4.255 8 H 0.062 0.938 9 N -0.568 5.568 10 C 0.146 3.854 11 C -0.126 4.126 12 C 0.128 3.872 13 N -0.679 5.679 14 C 0.480 3.520 15 O -0.519 6.519 16 C 0.465 3.535 17 F -0.161 7.161 18 F -0.160 7.160 19 F -0.162 7.162 20 C 0.103 3.897 21 C -0.182 4.182 22 C -0.223 4.223 23 H 0.250 0.750 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.423 0.577 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.660 -8.066 12.416 15.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.233 4.233 3 Si 0.777 3.223 4 H -0.191 1.191 5 H -0.225 1.225 6 H -0.215 1.215 7 C -0.385 4.385 8 H 0.079 0.921 9 N -0.285 5.285 10 C 0.020 3.980 11 C -0.166 4.166 12 C 0.005 3.995 13 N -0.331 5.331 14 C 0.258 3.742 15 O -0.394 6.394 16 C 0.407 3.593 17 F -0.142 7.142 18 F -0.141 7.141 19 F -0.144 7.144 20 C -0.005 4.005 21 C -0.220 4.220 22 C -0.264 4.264 23 H 0.059 0.941 24 H 0.087 0.913 25 H 0.053 0.947 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.262 0.738 31 H 0.135 0.865 32 H 0.091 0.909 33 H 0.129 0.871 34 H 0.118 0.882 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.712 -7.800 12.363 15.082 hybrid contribution 0.629 1.147 -0.084 1.311 sum 4.341 -6.653 12.280 14.625 Atomic orbital electron populations 1.70167 1.06646 1.26149 1.52848 1.25708 0.95498 1.01189 1.00897 0.85522 0.79168 0.80927 0.76721 1.19112 1.22500 1.21508 1.19266 0.94262 0.86525 1.38456 0.92066 1.43619 1.49219 1.01912 1.33791 1.20780 0.90751 1.01831 0.84665 1.22155 0.98204 1.02406 0.93867 1.21479 0.95472 1.02183 0.80354 1.45956 1.13085 1.69075 1.04978 1.20457 0.88081 0.80232 0.85433 1.90869 1.14238 1.48340 1.85986 1.19908 0.77791 0.75242 0.86391 1.93252 1.66800 1.95954 1.58184 1.93283 1.82314 1.41761 1.96744 1.93287 1.64905 1.59946 1.96247 1.21581 1.01297 0.89883 0.87702 1.23037 0.91692 1.02236 1.05047 1.23280 0.98011 1.00767 1.04308 0.94068 0.91253 0.94727 0.90586 0.92350 0.92018 0.90179 0.73833 0.86508 0.90852 0.87081 0.88159 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.94 11.33 21.65 0.25 -50.70 16 2 C -0.04 -1.86 4.96 84.86 0.42 -1.44 16 3 Si 0.95 42.67 29.61 68.60 2.03 44.71 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.25 -12.89 8.63 84.03 0.73 -12.16 16 8 H 0.06 3.12 6.55 -2.91 -0.02 3.10 16 9 N -0.57 -25.60 2.78 -678.03 -1.88 -27.49 16 10 C 0.15 6.02 5.34 86.38 0.46 6.48 16 11 C -0.13 -3.91 5.65 30.59 0.17 -3.74 16 12 C 0.13 3.52 5.67 86.38 0.49 4.01 16 13 N -0.68 -15.19 5.56 -463.07 -2.57 -17.76 16 14 C 0.48 11.97 7.36 87.66 0.64 12.61 16 15 O -0.52 -16.83 16.61 -3.03 -0.05 -16.88 16 16 C 0.46 9.62 3.43 71.24 0.24 9.86 16 17 F -0.16 -3.73 16.92 44.97 0.76 -2.97 16 18 F -0.16 -2.93 17.30 44.97 0.78 -2.16 16 19 F -0.16 -3.19 17.30 44.97 0.78 -2.41 16 20 C 0.10 3.94 6.56 44.99 0.30 4.23 16 21 C -0.18 -6.43 9.80 30.62 0.30 -6.13 16 22 C -0.22 -8.41 10.36 30.62 0.32 -8.09 16 23 H 0.25 13.59 8.32 -92.71 -0.77 12.82 16 24 H 0.07 3.40 5.36 -2.38 -0.01 3.39 16 25 H 0.03 1.36 8.07 -2.39 -0.02 1.34 16 26 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 27 H 0.06 1.96 8.14 -2.38 -0.02 1.95 16 28 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.42 7.14 8.47 -92.71 -0.79 6.35 16 31 H 0.12 3.72 8.14 -2.38 -0.02 3.70 16 32 H 0.07 2.95 6.37 -2.39 -0.02 2.94 16 33 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -60.31 314.76 4.50 -55.81 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.34 Total: 14.22 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 4.07 Total: 5.63 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -4.21 Total: -95.95 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.05 Total: -16.88 kcal Atomic # 9 Polarization: -9.86 SS G_CDS: 2.32 Total: -7.54 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.71 kcal Total: -60.31 4.50 -55.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774592323.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.912 kcal (2) G-P(sol) polarization free energy of solvation -60.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds