Wall clock time and date at job start Tue Mar 31 2020 01:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86802 * 119.99922 * 2 1 4 4 H 1.48498 * 109.47192 * 270.00212 * 3 2 1 5 5 H 1.48495 * 109.47170 * 30.00273 * 3 2 1 6 6 H 1.48502 * 109.47018 * 150.00509 * 3 2 1 7 7 C 1.38756 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99752 * 179.97438 * 7 2 1 9 9 O 1.34918 * 119.99856 * 359.97438 * 7 2 1 10 10 C 1.34316 * 116.99802 * 179.97438 * 9 7 2 11 11 O 1.21205 * 119.99831 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99914 * 180.02562 * 10 9 7 13 13 C 1.53001 * 109.47141 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47141 * 179.97438 * 13 12 10 15 15 N 1.30278 * 126.28540 * 89.97183 * 14 13 12 16 16 N 1.28662 * 109.38212 * 179.97438 * 15 14 13 17 17 C 1.30277 * 109.38095 * 0.02562 * 16 15 14 18 18 C 1.50706 * 126.27916 * 179.97438 * 17 16 15 19 19 C 1.54262 * 110.03197 * 57.93608 * 18 17 16 20 20 C 1.54973 * 104.15482 * 217.13258 * 19 18 17 21 21 C 1.54892 * 102.77609 * 37.89147 * 20 19 18 22 22 C 1.53869 * 110.03329 * 300.71378 * 18 17 16 23 23 O 1.34357 * 107.43828 * 0.24091 * 17 16 15 24 24 H 0.97000 * 120.00327 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47520 * 60.00088 * 12 10 9 26 26 H 1.09008 * 109.47082 * 299.99948 * 12 10 9 27 27 H 1.08998 * 109.47290 * 59.99397 * 13 12 10 28 28 H 1.09001 * 109.46929 * 299.99451 * 13 12 10 29 29 H 1.09004 * 110.01341 * 179.32091 * 18 17 16 30 30 H 1.09003 * 110.48867 * 335.77618 * 19 18 17 31 31 H 1.08998 * 110.49248 * 98.42682 * 19 18 17 32 32 H 1.08995 * 110.72367 * 279.56991 * 20 19 18 33 33 H 1.09004 * 110.92074 * 156.29347 * 20 19 18 34 34 H 1.09005 * 110.47949 * 203.40489 * 21 20 19 35 35 H 1.08992 * 110.60253 * 80.81423 * 21 20 19 36 36 H 1.08999 * 110.03405 * 238.57276 * 22 18 17 37 37 H 1.09008 * 110.03368 * 359.95429 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4958 2.0465 -1.4000 5 1 1.4459 2.6526 0.7001 6 1 3.5460 1.4402 0.6999 7 6 2.0082 -1.2017 -0.0005 8 1 3.0882 -1.2016 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0016 11 8 3.2755 -3.4330 -0.0020 12 6 1.3810 -4.8392 -0.0023 13 6 2.4347 -5.9485 -0.0028 14 6 1.7506 -7.2912 -0.0028 15 7 1.3997 -7.9778 -1.0530 16 7 0.8416 -9.0750 -0.6789 17 6 0.8169 -9.1257 0.6227 18 6 0.2489 -10.2418 1.4610 19 6 0.9495 -11.5719 1.1148 20 6 -0.1810 -12.6286 1.1987 21 6 -1.3995 -11.8740 0.6114 22 6 -1.2439 -10.4338 1.1416 23 8 1.3853 -7.9976 1.0804 24 1 -0.4850 0.8400 0.0004 25 1 0.7578 -4.9291 -0.8920 26 1 0.7585 -4.9303 0.8880 27 1 3.0576 -5.8585 0.8871 28 1 3.0574 -5.8577 -0.8928 29 1 0.3783 -10.0162 2.5196 30 1 1.3624 -11.5344 0.1067 31 1 1.7323 -11.7911 1.8408 32 1 -0.3658 -12.9143 2.2341 33 1 0.0589 -13.5039 0.5950 34 1 -2.3299 -12.3143 0.9703 35 1 -1.3687 -11.8849 -0.4780 36 1 -1.8391 -10.3022 2.0453 37 1 -1.5579 -9.7191 0.3808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786750385.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:08 Heat of formation + Delta-G solvation = -64.636325 kcal Electronic energy + Delta-G solvation = -20869.616447 eV Core-core repulsion = 17420.624780 eV Total energy + Delta-G solvation = -3448.991667 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.25217 -39.10187 -38.55498 -36.14828 -35.62180 -33.89203 -32.18417 -31.28400 -29.13508 -28.57160 -26.16483 -24.63209 -23.60794 -22.15435 -21.07571 -20.40620 -19.88765 -17.80754 -17.57767 -17.15580 -16.73776 -16.00299 -15.91089 -15.25496 -14.85128 -14.39929 -14.23433 -13.84647 -13.74590 -13.35737 -12.77812 -12.42065 -12.17725 -12.14839 -11.86420 -11.81527 -11.60167 -11.52369 -11.48444 -11.44379 -11.26633 -11.04325 -10.95144 -10.75099 -10.46140 -10.41866 -9.85265 -9.50289 -9.09769 -8.61439 -6.44373 -4.12731 1.10938 2.16461 2.35489 3.08534 3.17472 3.23442 3.46114 3.59727 3.92235 4.09614 4.15994 4.39629 4.52791 4.63034 4.84852 4.96463 5.01642 5.03852 5.07471 5.09622 5.22584 5.26943 5.36227 5.44266 5.46955 5.52114 5.56235 5.72026 5.75540 5.77293 5.88872 5.98131 6.02863 6.11127 6.67745 7.36179 7.90986 8.30954 8.64202 9.04119 9.79124 10.73447 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.046230 B = 0.002717 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.524289 B =10301.672994 C =10607.704324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.383 4.383 8 H 0.097 0.903 9 O -0.211 6.211 10 C 0.400 3.600 11 O -0.557 6.557 12 C -0.101 4.101 13 C -0.010 4.010 14 C 0.177 3.823 15 N -0.287 5.287 16 N -0.282 5.282 17 C 0.159 3.841 18 C 0.004 3.996 19 C -0.116 4.116 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.115 4.115 23 O -0.223 6.223 24 H 0.270 0.730 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.121 0.879 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.070 -22.080 4.602 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.162 4.162 3 Si 0.769 3.231 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.460 4.460 8 H 0.115 0.885 9 O -0.118 6.118 10 C 0.247 3.753 11 O -0.455 6.455 12 C -0.140 4.140 13 C -0.048 4.048 14 C -0.034 4.034 15 N -0.133 5.133 16 N -0.129 5.129 17 C -0.052 4.052 18 C -0.016 4.016 19 C -0.154 4.154 20 C -0.159 4.159 21 C -0.160 4.160 22 C -0.153 4.153 23 O -0.102 6.102 24 H 0.080 0.920 25 H 0.119 0.881 26 H 0.114 0.886 27 H 0.124 0.876 28 H 0.139 0.861 29 H 0.121 0.879 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.127 -22.206 3.362 22.559 hybrid contribution 0.540 1.256 1.201 1.820 sum -1.588 -20.950 4.563 21.500 Atomic orbital electron populations 1.69991 1.06046 1.27794 1.46266 1.25361 0.95827 0.98943 0.96098 0.85658 0.79020 0.79646 0.78785 1.19820 1.20320 1.19068 1.21247 0.92422 0.79721 1.52560 0.88521 1.83867 1.39353 1.13376 1.75209 1.22777 0.86537 0.87015 0.79004 1.90568 1.15534 1.88092 1.51323 1.21006 0.97990 0.89426 1.05576 1.19998 0.96388 0.81059 1.07387 1.28158 0.98223 0.97710 0.79292 1.74453 1.13075 1.00361 1.25415 1.74316 1.16091 1.13445 1.09049 1.27942 0.97213 0.88131 0.91939 1.20432 0.95618 0.88027 0.97500 1.22508 0.98065 0.91676 1.03137 1.22496 0.94515 0.97595 1.01344 1.22358 0.98287 0.94108 1.01267 1.22226 0.92539 0.98419 1.02158 1.84811 1.58803 1.28049 1.38582 0.92000 0.88082 0.88593 0.87584 0.86094 0.87857 0.90090 0.90662 0.91094 0.90878 0.91162 0.90866 0.90397 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.27 13.67 55.48 0.76 -24.51 16 2 C 0.04 1.18 5.49 -17.53 -0.10 1.08 16 3 Si 0.94 21.16 29.55 -169.99 -5.02 16.13 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.38 -11.24 9.64 30.92 0.30 -10.94 16 8 H 0.10 2.83 6.86 -52.49 -0.36 2.47 16 9 O -0.21 -5.98 9.75 -20.71 -0.20 -6.18 16 10 C 0.40 9.50 7.91 36.00 0.28 9.78 16 11 O -0.56 -14.22 15.22 -19.05 -0.29 -14.51 16 12 C -0.10 -1.76 5.79 -27.88 -0.16 -1.93 16 13 C -0.01 -0.15 5.13 -27.88 -0.14 -0.29 16 14 C 0.18 2.69 7.73 -12.94 -0.10 2.59 16 15 N -0.29 -4.77 12.22 32.55 0.40 -4.37 16 16 N -0.28 -4.31 12.00 32.55 0.39 -3.92 16 17 C 0.16 2.05 6.70 -12.94 -0.09 1.96 16 18 C 0.00 0.04 3.43 -90.66 -0.31 -0.27 16 19 C -0.12 -0.86 6.36 -25.03 -0.16 -1.01 16 20 C -0.12 -0.70 6.91 -24.69 -0.17 -0.87 16 21 C -0.12 -0.80 6.83 -25.07 -0.17 -0.97 16 22 C -0.12 -0.90 6.45 -25.62 -0.17 -1.07 16 23 O -0.22 -3.18 10.87 5.38 0.06 -3.12 16 24 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 26 H 0.10 1.53 8.14 -51.92 -0.42 1.11 16 27 H 0.11 1.51 8.10 -51.93 -0.42 1.09 16 28 H 0.12 1.82 8.10 -51.93 -0.42 1.39 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.74 7.68 -51.93 -0.40 0.34 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.73 7.66 -51.92 -0.40 0.33 16 LS Contribution 322.96 15.07 4.87 4.87 Total: -1.00 -33.94 322.96 -4.96 -38.91 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -4.94 Total: -1.35 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -0.98 Total: -1.95 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 1.55 Total: -32.80 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.43 Total: -23.81 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.94 -4.96 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786750385.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.730 kcal (2) G-P(sol) polarization free energy of solvation -33.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds