Wall clock time and date at job start Tue Mar 31 2020 01:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86802 * 119.99922 * 2 1 4 4 H 1.48498 * 109.47192 * 270.00212 * 3 2 1 5 5 H 1.48495 * 109.47170 * 30.00273 * 3 2 1 6 6 H 1.48502 * 109.47018 * 150.00509 * 3 2 1 7 7 C 1.38756 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99752 * 179.97438 * 7 2 1 9 9 O 1.34918 * 119.99856 * 359.97438 * 7 2 1 10 10 C 1.34316 * 116.99802 * 179.97438 * 9 7 2 11 11 O 1.21205 * 119.99831 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99914 * 180.02562 * 10 9 7 13 13 C 1.53001 * 109.47141 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47141 * 179.97438 * 13 12 10 15 15 N 1.30278 * 126.28540 * 89.97183 * 14 13 12 16 16 N 1.28662 * 109.38212 * 179.97438 * 15 14 13 17 17 C 1.30277 * 109.38095 * 0.02562 * 16 15 14 18 18 C 1.50706 * 126.27916 * 179.97438 * 17 16 15 19 19 C 1.54262 * 110.03197 * 57.93608 * 18 17 16 20 20 C 1.54973 * 104.15482 * 217.13258 * 19 18 17 21 21 C 1.54892 * 102.77609 * 37.89147 * 20 19 18 22 22 C 1.53869 * 110.03329 * 300.71378 * 18 17 16 23 23 O 1.34357 * 107.43828 * 0.24091 * 17 16 15 24 24 H 0.97000 * 120.00327 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47520 * 60.00088 * 12 10 9 26 26 H 1.09008 * 109.47082 * 299.99948 * 12 10 9 27 27 H 1.08998 * 109.47290 * 59.99397 * 13 12 10 28 28 H 1.09001 * 109.46929 * 299.99451 * 13 12 10 29 29 H 1.09004 * 110.01341 * 179.32091 * 18 17 16 30 30 H 1.09003 * 110.48867 * 335.77618 * 19 18 17 31 31 H 1.08998 * 110.49248 * 98.42682 * 19 18 17 32 32 H 1.08995 * 110.72367 * 279.56991 * 20 19 18 33 33 H 1.09004 * 110.92074 * 156.29347 * 20 19 18 34 34 H 1.09005 * 110.47949 * 203.40489 * 21 20 19 35 35 H 1.08992 * 110.60253 * 80.81423 * 21 20 19 36 36 H 1.08999 * 110.03405 * 238.57276 * 22 18 17 37 37 H 1.09008 * 110.03368 * 359.95429 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4958 2.0465 -1.4000 5 1 1.4459 2.6526 0.7001 6 1 3.5460 1.4402 0.6999 7 6 2.0082 -1.2017 -0.0005 8 1 3.0882 -1.2016 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0016 11 8 3.2755 -3.4330 -0.0020 12 6 1.3810 -4.8392 -0.0023 13 6 2.4347 -5.9485 -0.0028 14 6 1.7506 -7.2912 -0.0028 15 7 1.3997 -7.9778 -1.0530 16 7 0.8416 -9.0750 -0.6789 17 6 0.8169 -9.1257 0.6227 18 6 0.2489 -10.2418 1.4610 19 6 0.9495 -11.5719 1.1148 20 6 -0.1810 -12.6286 1.1987 21 6 -1.3995 -11.8740 0.6114 22 6 -1.2439 -10.4338 1.1416 23 8 1.3853 -7.9976 1.0804 24 1 -0.4850 0.8400 0.0004 25 1 0.7578 -4.9291 -0.8920 26 1 0.7585 -4.9303 0.8880 27 1 3.0576 -5.8585 0.8871 28 1 3.0574 -5.8577 -0.8928 29 1 0.3783 -10.0162 2.5196 30 1 1.3624 -11.5344 0.1067 31 1 1.7323 -11.7911 1.8408 32 1 -0.3658 -12.9143 2.2341 33 1 0.0589 -13.5039 0.5950 34 1 -2.3299 -12.3143 0.9703 35 1 -1.3687 -11.8849 -0.4780 36 1 -1.8391 -10.3022 2.0453 37 1 -1.5579 -9.7191 0.3808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786750385.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:08 Heat of formation + Delta-G solvation = -89.043548 kcal Electronic energy + Delta-G solvation = -20870.674824 eV Core-core repulsion = 17420.624780 eV Total energy + Delta-G solvation = -3450.050044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.38972 -41.08554 -39.17993 -37.56066 -37.30327 -35.32889 -34.31256 -32.30248 -29.69870 -29.59544 -27.89818 -26.32576 -24.60375 -23.44888 -21.70766 -21.59550 -21.11558 -19.91277 -18.90286 -18.30696 -18.24681 -17.20183 -16.88860 -16.63417 -16.42707 -16.21759 -15.35468 -15.12133 -14.70708 -14.46339 -14.31977 -13.63459 -13.56556 -13.49360 -13.15833 -13.02460 -12.83158 -12.67805 -12.53013 -12.34876 -12.17090 -12.15694 -12.06156 -12.00272 -11.96045 -11.62192 -11.46379 -11.14726 -10.71114 -10.55382 -8.55155 -6.35270 -0.00243 1.07488 1.20334 1.29039 1.35557 1.52635 1.61742 2.09695 2.49863 2.89566 2.96579 3.28271 3.55578 3.56868 3.62433 3.82033 3.92483 4.12215 4.17602 4.37406 4.40623 4.45291 4.47756 4.52491 4.70131 4.72072 4.74696 4.77583 4.82055 4.89883 5.04542 5.17197 5.21725 5.24773 5.29368 5.48828 5.81514 6.62186 6.90129 7.16490 7.72703 8.65579 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.046230 B = 0.002717 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.524289 B =10301.672994 C =10607.704324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.006 4.006 3 Si 1.018 2.982 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.420 4.420 8 H 0.086 0.914 9 O -0.245 6.245 10 C 0.403 3.597 11 O -0.576 6.576 12 C -0.088 4.088 13 C 0.002 3.998 14 C 0.175 3.825 15 N -0.310 5.310 16 N -0.311 5.311 17 C 0.175 3.825 18 C 0.000 4.000 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.123 4.123 22 C -0.115 4.115 23 O -0.226 6.226 24 H 0.279 0.721 25 H 0.110 0.890 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.137 -22.982 5.891 23.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.206 4.206 3 Si 0.837 3.163 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.496 4.496 8 H 0.104 0.896 9 O -0.153 6.153 10 C 0.251 3.749 11 O -0.474 6.474 12 C -0.127 4.127 13 C -0.037 4.037 14 C -0.036 4.036 15 N -0.157 5.157 16 N -0.157 5.157 17 C -0.036 4.036 18 C -0.020 4.020 19 C -0.153 4.153 20 C -0.152 4.152 21 C -0.160 4.160 22 C -0.153 4.153 23 O -0.105 6.105 24 H 0.088 0.912 25 H 0.129 0.871 26 H 0.134 0.866 27 H 0.134 0.866 28 H 0.138 0.862 29 H 0.145 0.855 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.198 -23.148 4.637 23.710 hybrid contribution 0.543 1.364 0.815 1.679 sum -1.656 -21.784 5.452 22.517 Atomic orbital electron populations 1.70076 1.07729 1.29433 1.46905 1.26569 0.96873 1.02476 0.94663 0.84610 0.77729 0.74463 0.79492 1.18565 1.18549 1.18557 1.21465 0.92301 0.80995 1.54851 0.89607 1.83889 1.40450 1.14305 1.76641 1.23910 0.86557 0.87923 0.76552 1.90542 1.16696 1.88582 1.51556 1.21030 0.98436 0.86284 1.06922 1.19843 0.95608 0.80284 1.07952 1.27933 0.98585 0.97706 0.79422 1.74398 1.13692 1.01137 1.26429 1.74280 1.17480 1.13454 1.10452 1.28874 0.94977 0.87986 0.91784 1.20876 0.96029 0.87048 0.98054 1.22531 0.99037 0.91440 1.02309 1.22497 0.93052 0.97029 1.02595 1.22368 0.99658 0.93570 1.00416 1.22265 0.92036 0.98576 1.02421 1.84825 1.59002 1.28447 1.38233 0.91187 0.87144 0.86638 0.86560 0.86173 0.85481 0.92286 0.89056 0.89105 0.90259 0.89455 0.92430 0.88276 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.38 13.67 21.62 0.30 -53.08 16 2 C -0.01 -0.32 5.49 84.88 0.47 0.15 16 3 Si 1.02 43.07 29.55 68.60 2.03 45.10 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.42 -25.20 9.64 67.94 0.66 -24.55 16 8 H 0.09 5.17 6.86 -2.91 -0.02 5.15 16 9 O -0.24 -14.18 9.75 14.85 0.14 -14.04 16 10 C 0.40 19.33 7.91 71.23 0.56 19.90 16 11 O -0.58 -29.71 15.22 20.79 0.32 -29.40 16 12 C -0.09 -3.03 5.79 29.85 0.17 -2.86 16 13 C 0.00 0.05 5.13 29.85 0.15 0.20 16 14 C 0.17 5.21 7.73 88.34 0.68 5.89 16 15 N -0.31 -10.32 12.22 -165.49 -2.02 -12.34 16 16 N -0.31 -9.50 12.00 -165.50 -1.99 -11.49 16 17 C 0.17 4.34 6.70 88.34 0.59 4.94 16 18 C 0.00 0.00 3.43 -10.82 -0.04 -0.04 16 19 C -0.12 -1.48 6.36 31.70 0.20 -1.27 16 20 C -0.11 -1.01 6.91 31.92 0.22 -0.79 16 21 C -0.12 -1.38 6.83 31.67 0.22 -1.16 16 22 C -0.11 -1.60 6.45 31.32 0.20 -1.39 16 23 O -0.23 -6.15 10.87 -3.67 -0.04 -6.19 16 24 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 25 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 26 H 0.12 3.56 8.14 -2.38 -0.02 3.54 16 27 H 0.12 3.19 8.10 -2.39 -0.02 3.17 16 28 H 0.12 3.57 8.10 -2.39 -0.02 3.55 16 29 H 0.13 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.06 1.03 7.68 -2.39 -0.02 1.01 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 0.49 8.14 -2.39 -0.02 0.48 16 33 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.95 7.66 -2.38 -0.02 0.94 16 Total: -1.00 -74.83 322.96 3.90 -70.92 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 1.08 Total: 11.50 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 4.09 Total: -0.99 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -3.71 Total: -76.91 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: 0.42 Total: -49.62 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -74.83 3.90 -70.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786750385.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.119 kcal (2) G-P(sol) polarization free energy of solvation -74.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds