Wall clock time and date at job start Tue Mar 31 2020 01:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00039 * 2 1 4 4 H 1.48496 * 109.47359 * 239.99893 * 3 2 1 5 5 H 1.48505 * 109.46909 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47457 * 119.99794 * 3 2 1 7 7 C 1.37881 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99788 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99623 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46784 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99964 * 180.02562 * 10 9 7 12 12 O 1.21583 * 120.00019 * 5.03250 * 11 10 9 13 13 N 1.34776 * 120.00037 * 185.03089 * 11 10 9 14 14 C 1.47152 * 120.98080 * 4.48438 * 13 11 10 15 15 C 1.53295 * 108.38604 * 230.55805 * 14 13 11 16 16 O 1.42967 * 109.21964 * 307.69815 * 15 14 13 17 17 C 1.42957 * 114.16743 * 62.58224 * 16 15 14 18 18 C 1.47149 * 120.98492 * 184.50820 * 13 11 10 19 19 H 1.09000 * 109.67925 * 249.20466 * 18 13 11 20 20 C 1.50696 * 109.68137 * 9.71788 * 18 13 11 21 21 C 1.34518 * 125.79011 * 231.89741 * 20 18 13 22 22 C 1.41385 * 106.83774 * 180.02562 * 21 20 18 23 23 C 1.34511 * 106.84491 * 0.02562 * 22 21 20 24 24 O 1.34304 * 125.78862 * 51.91714 * 20 18 13 25 25 H 0.97000 * 119.99970 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47091 * 60.00476 * 9 7 2 27 27 H 1.08996 * 109.47880 * 299.99729 * 9 7 2 28 28 H 0.96999 * 119.99967 * 359.97438 * 10 9 7 29 29 H 1.09005 * 109.68438 * 350.27677 * 14 13 11 30 30 H 1.09001 * 109.68249 * 110.79728 * 14 13 11 31 31 H 1.08994 * 109.51546 * 67.61831 * 15 14 13 32 32 H 1.08999 * 109.51468 * 187.77599 * 15 14 13 33 33 H 1.08996 * 109.50990 * 177.49783 * 17 16 15 34 34 H 1.08994 * 109.51507 * 57.34382 * 17 16 15 35 35 H 1.07997 * 126.58296 * 359.97438 * 21 20 18 36 36 H 1.08004 * 126.57947 * 179.73317 * 22 21 20 37 37 H 1.08003 * 125.79128 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5622 -5.1068 -0.0928 13 7 2.6252 -5.9063 0.1024 14 6 4.0606 -5.6603 0.3139 15 6 4.8476 -6.4657 -0.7263 16 8 4.4243 -7.8306 -0.6834 17 6 3.0489 -8.0276 -1.0197 18 6 2.1697 -7.3022 0.0054 19 1 2.2621 -7.7868 0.9774 20 6 0.7319 -7.3367 -0.4443 21 6 -0.2671 -8.0007 0.1647 22 6 -1.4384 -7.7601 -0.5897 23 6 -1.0851 -6.9640 -1.6148 24 8 0.2304 -6.7102 -1.5212 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6240 -2.5568 0.8902 28 1 3.1567 -3.4354 0.0002 29 1 4.2727 -4.5980 0.1928 30 1 4.3438 -5.9792 1.3169 31 1 4.6612 -6.0578 -1.7197 32 1 5.9127 -6.4076 -0.5020 33 1 2.8199 -9.0931 -1.0064 34 1 2.8560 -7.6254 -2.0142 35 1 -0.1892 -8.6028 1.0579 36 1 -2.4263 -8.1457 -0.3852 37 1 -1.7473 -6.5910 -2.3822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787358467.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:38 Heat of formation + Delta-G solvation = -31.882243 kcal Electronic energy + Delta-G solvation = -22695.863747 eV Core-core repulsion = 19248.292403 eV Total energy + Delta-G solvation = -3447.571343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.12211 -40.04728 -38.18226 -34.70035 -34.32314 -32.92157 -32.35437 -31.71199 -28.86348 -27.59139 -26.64758 -24.24404 -22.90735 -21.89244 -21.15494 -20.40443 -19.28267 -18.29326 -16.87149 -16.55148 -16.13143 -15.79629 -15.51696 -15.26536 -15.13658 -14.79074 -14.66283 -13.85058 -13.72895 -13.35623 -12.90071 -12.41688 -12.33331 -12.15442 -12.03253 -11.79948 -11.77037 -11.44646 -10.98713 -10.93397 -10.89081 -10.31266 -10.25634 -9.58887 -9.40552 -9.37083 -8.73491 -8.46181 -7.81399 -7.69443 -6.16951 -4.23964 2.18525 2.88310 3.15338 3.24220 3.29269 3.30776 3.47252 3.69199 3.84967 4.28727 4.53660 4.58990 4.87622 4.90094 4.95360 5.13916 5.17110 5.19121 5.40343 5.46353 5.50025 5.59562 5.64557 5.78341 6.18810 6.26690 6.44127 6.59275 6.88339 6.96798 7.01578 7.47383 7.48362 7.55266 7.68999 7.80546 7.99283 8.71561 8.85207 9.27152 9.44581 10.93167 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018842 B = 0.005328 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.720116 B = 5254.093485 C = 6483.392775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.269 3.731 10 N -0.727 5.727 11 C 0.696 3.304 12 O -0.564 6.564 13 N -0.644 5.644 14 C 0.079 3.921 15 C 0.045 3.955 16 O -0.377 6.377 17 C 0.054 3.946 18 C 0.213 3.787 19 H 0.102 0.898 20 C 0.030 3.970 21 C -0.218 4.218 22 C -0.220 4.220 23 C -0.025 4.025 24 O -0.150 6.150 25 H 0.266 0.734 26 H 0.025 0.975 27 H 0.023 0.977 28 H 0.384 0.616 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.899 -15.844 -1.510 17.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.079 0.921 9 C 0.148 3.852 10 N -0.381 5.381 11 C 0.397 3.603 12 O -0.441 6.441 13 N -0.386 5.386 14 C -0.044 4.044 15 C -0.033 4.033 16 O -0.295 6.295 17 C -0.024 4.024 18 C 0.108 3.892 19 H 0.119 0.881 20 C -0.022 4.022 21 C -0.238 4.238 22 C -0.239 4.239 23 C -0.094 4.094 24 O -0.044 6.044 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.041 0.959 28 H 0.219 0.781 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 6.106 -15.759 -1.711 16.987 hybrid contribution 0.420 1.355 0.208 1.434 sum 6.527 -14.404 -1.503 15.885 Atomic orbital electron populations 1.69969 1.06098 1.27397 1.48748 1.24938 0.94909 0.99377 0.94714 0.86471 0.79414 0.82330 0.78657 1.20087 1.21044 1.20074 1.21166 0.93150 0.90453 1.53391 0.92107 1.18968 0.87707 0.80949 0.97542 1.45861 1.10765 1.04208 1.77269 1.16044 0.84860 0.80942 0.78428 1.90885 1.13906 1.81779 1.57524 1.47519 1.07089 1.04443 1.79511 1.22301 0.80795 1.01482 0.99860 1.23046 0.99213 0.82287 0.98729 1.87951 1.25433 1.25718 1.90400 1.23064 0.81070 1.01145 0.97108 1.20074 0.86951 0.82854 0.99310 0.88055 1.21281 0.94411 0.96051 0.90457 1.21196 0.92289 1.07449 1.02830 1.21526 0.99302 1.05215 0.97902 1.23720 0.82689 1.00990 1.02038 1.84061 1.22608 1.56405 1.41310 0.92391 0.95694 0.95896 0.78118 0.88813 0.90587 0.92304 0.87496 0.87280 0.91995 0.84522 0.84420 0.79219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.18 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 9 C 0.27 7.24 5.43 -5.19 -0.03 7.21 16 10 N -0.73 -15.78 5.45 -66.41 -0.36 -16.14 16 11 C 0.70 14.64 8.05 -86.92 -0.70 13.94 16 12 O -0.56 -13.76 11.66 -19.61 -0.23 -13.98 16 13 N -0.64 -10.32 3.02 -171.75 -0.52 -10.84 16 14 C 0.08 0.95 6.64 -3.53 -0.02 0.93 16 15 C 0.04 0.46 6.99 37.31 0.26 0.72 16 16 O -0.38 -4.40 10.74 -35.23 -0.38 -4.78 16 17 C 0.05 0.63 6.27 37.31 0.23 0.87 16 18 C 0.21 3.03 3.55 -68.58 -0.24 2.79 16 19 H 0.10 1.29 8.11 -51.93 -0.42 0.86 16 20 C 0.03 0.50 3.85 -35.63 -0.14 0.36 16 21 C -0.22 -3.44 10.79 -39.70 -0.43 -3.87 16 22 C -0.22 -3.43 10.91 -39.70 -0.43 -3.87 16 23 C -0.03 -0.42 11.83 29.41 0.35 -0.07 16 24 O -0.15 -2.82 8.31 -19.21 -0.16 -2.98 16 25 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.38 7.17 5.85 -40.82 -0.24 6.93 16 29 H 0.09 1.09 5.65 -51.93 -0.29 0.79 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 35 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.14 1.78 8.06 -52.48 -0.42 1.36 16 37 H 0.19 2.52 8.06 -52.48 -0.42 2.10 16 LS Contribution 309.03 15.07 4.66 4.66 Total: -1.00 -34.10 309.03 -7.56 -41.66 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.71 Total: 6.45 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -1.57 Total: 5.60 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.14 Total: -52.43 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.77 Total: -21.74 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.10 -7.56 -41.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358467.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.779 kcal (2) G-P(sol) polarization free energy of solvation -34.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds