Wall clock time and date at job start Tue Mar 31 2020 01:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00039 * 2 1 4 4 H 1.48496 * 109.47359 * 239.99893 * 3 2 1 5 5 H 1.48505 * 109.46909 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47457 * 119.99794 * 3 2 1 7 7 C 1.37881 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99788 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99623 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46784 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99964 * 180.02562 * 10 9 7 12 12 O 1.21583 * 120.00019 * 5.03250 * 11 10 9 13 13 N 1.34776 * 120.00037 * 185.03089 * 11 10 9 14 14 C 1.47152 * 120.98080 * 4.48438 * 13 11 10 15 15 C 1.53295 * 108.38604 * 230.55805 * 14 13 11 16 16 O 1.42967 * 109.21964 * 307.69815 * 15 14 13 17 17 C 1.42957 * 114.16743 * 62.58224 * 16 15 14 18 18 C 1.47149 * 120.98492 * 184.50820 * 13 11 10 19 19 H 1.09000 * 109.67925 * 249.20466 * 18 13 11 20 20 C 1.50696 * 109.68137 * 9.71788 * 18 13 11 21 21 C 1.34518 * 125.79011 * 231.89741 * 20 18 13 22 22 C 1.41385 * 106.83774 * 180.02562 * 21 20 18 23 23 C 1.34511 * 106.84491 * 0.02562 * 22 21 20 24 24 O 1.34304 * 125.78862 * 51.91714 * 20 18 13 25 25 H 0.97000 * 119.99970 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47091 * 60.00476 * 9 7 2 27 27 H 1.08996 * 109.47880 * 299.99729 * 9 7 2 28 28 H 0.96999 * 119.99967 * 359.97438 * 10 9 7 29 29 H 1.09005 * 109.68438 * 350.27677 * 14 13 11 30 30 H 1.09001 * 109.68249 * 110.79728 * 14 13 11 31 31 H 1.08994 * 109.51546 * 67.61831 * 15 14 13 32 32 H 1.08999 * 109.51468 * 187.77599 * 15 14 13 33 33 H 1.08996 * 109.50990 * 177.49783 * 17 16 15 34 34 H 1.08994 * 109.51507 * 57.34382 * 17 16 15 35 35 H 1.07997 * 126.58296 * 359.97438 * 21 20 18 36 36 H 1.08004 * 126.57947 * 179.73317 * 22 21 20 37 37 H 1.08003 * 125.79128 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5622 -5.1068 -0.0928 13 7 2.6252 -5.9063 0.1024 14 6 4.0606 -5.6603 0.3139 15 6 4.8476 -6.4657 -0.7263 16 8 4.4243 -7.8306 -0.6834 17 6 3.0489 -8.0276 -1.0197 18 6 2.1697 -7.3022 0.0054 19 1 2.2621 -7.7868 0.9774 20 6 0.7319 -7.3367 -0.4443 21 6 -0.2671 -8.0007 0.1647 22 6 -1.4384 -7.7601 -0.5897 23 6 -1.0851 -6.9640 -1.6148 24 8 0.2304 -6.7102 -1.5212 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6240 -2.5568 0.8902 28 1 3.1567 -3.4354 0.0002 29 1 4.2727 -4.5980 0.1928 30 1 4.3438 -5.9792 1.3169 31 1 4.6612 -6.0578 -1.7197 32 1 5.9127 -6.4076 -0.5020 33 1 2.8199 -9.0931 -1.0064 34 1 2.8560 -7.6254 -2.0142 35 1 -0.1892 -8.6028 1.0579 36 1 -2.4263 -8.1457 -0.3852 37 1 -1.7473 -6.5910 -2.3822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787358467.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:38 Heat of formation + Delta-G solvation = -55.817698 kcal Electronic energy + Delta-G solvation = -22696.901666 eV Core-core repulsion = 19248.292403 eV Total energy + Delta-G solvation = -3448.609263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.38356 -41.37086 -39.47296 -36.32433 -35.83896 -34.58741 -33.79061 -33.03855 -30.11309 -29.21865 -28.09878 -25.40231 -24.66258 -23.19832 -22.44708 -21.71799 -20.83115 -19.70571 -18.27420 -18.01277 -17.55360 -17.11108 -16.88439 -16.61234 -16.44935 -16.11260 -15.99726 -15.37354 -15.12132 -14.75681 -14.49206 -14.00018 -13.76977 -13.53715 -13.46209 -13.17289 -12.99157 -12.90070 -12.68709 -12.40035 -12.23822 -11.92119 -11.51025 -11.30737 -11.16768 -10.80977 -10.63216 -9.96621 -9.49093 -9.00005 -8.29610 -6.46653 0.92434 1.42052 1.46855 1.53743 1.58277 1.90817 2.19446 2.35228 2.38215 2.78743 3.05274 3.09509 3.53399 3.74970 3.89730 4.01665 4.16362 4.21150 4.31121 4.35045 4.53233 4.63471 4.79967 4.86772 4.97300 5.03888 5.08159 5.25242 5.27088 5.39467 5.47204 5.64236 5.80181 5.82651 5.99181 6.01321 6.44511 6.64505 7.12758 7.23760 7.67491 8.82438 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018842 B = 0.005328 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.720116 B = 5254.093485 C = 6483.392775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.292 3.708 10 N -0.723 5.723 11 C 0.690 3.310 12 O -0.604 6.604 13 N -0.637 5.637 14 C 0.072 3.928 15 C 0.048 3.952 16 O -0.377 6.377 17 C 0.064 3.936 18 C 0.206 3.794 19 H 0.123 0.877 20 C 0.011 3.989 21 C -0.227 4.227 22 C -0.224 4.224 23 C -0.052 4.052 24 O -0.178 6.178 25 H 0.269 0.731 26 H -0.018 1.018 27 H -0.018 1.018 28 H 0.400 0.600 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.144 0.856 33 H 0.136 0.864 34 H 0.047 0.953 35 H 0.161 0.839 36 H 0.162 0.838 37 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.507 -16.283 -1.004 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.594 4.594 8 H 0.101 0.899 9 C 0.169 3.831 10 N -0.379 5.379 11 C 0.392 3.608 12 O -0.484 6.484 13 N -0.378 5.378 14 C -0.050 4.050 15 C -0.029 4.029 16 O -0.295 6.295 17 C -0.013 4.013 18 C 0.103 3.897 19 H 0.140 0.860 20 C -0.040 4.040 21 C -0.247 4.247 22 C -0.243 4.243 23 C -0.120 4.120 24 O -0.074 6.074 25 H 0.078 0.922 26 H 0.000 1.000 27 H 0.000 1.000 28 H 0.238 0.762 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.161 0.839 33 H 0.154 0.846 34 H 0.066 0.934 35 H 0.178 0.822 36 H 0.179 0.821 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 8.791 -16.263 -1.201 18.526 hybrid contribution -0.424 1.387 0.065 1.452 sum 8.367 -14.876 -1.136 17.105 Atomic orbital electron populations 1.70141 1.08320 1.28634 1.49814 1.26068 0.95763 1.03876 0.93775 0.85191 0.77903 0.76488 0.79529 1.18661 1.21097 1.18523 1.21549 0.94230 0.90473 1.53145 0.89926 1.18326 0.87923 0.83235 0.93585 1.45452 1.10750 1.03721 1.78027 1.16219 0.85023 0.81454 0.78147 1.90860 1.16006 1.82670 1.58851 1.47506 1.08217 1.04047 1.77998 1.22651 0.78297 1.02260 1.01784 1.23186 1.00758 0.81275 0.97724 1.87966 1.24931 1.26397 1.90192 1.23022 0.80774 1.02173 0.95378 1.20488 0.86250 0.81904 1.01078 0.85992 1.21841 0.95879 0.96029 0.90220 1.21617 0.92107 1.07511 1.03438 1.21921 1.00450 1.04608 0.97355 1.24301 0.82534 1.01758 1.03407 1.84016 1.23649 1.57390 1.42308 0.92247 1.00035 0.99979 0.76217 0.88594 0.88442 0.93008 0.83888 0.84627 0.93425 0.82159 0.82056 0.77380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 2 C 0.00 0.27 5.46 84.66 0.46 0.73 16 3 Si 0.99 42.27 29.54 68.60 2.03 44.29 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.56 -30.52 9.28 25.60 0.24 -30.28 16 8 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 9 C 0.29 16.46 5.43 85.63 0.47 16.92 16 10 N -0.72 -32.03 5.45 -482.29 -2.63 -34.66 16 11 C 0.69 29.62 8.05 179.05 1.44 31.06 16 12 O -0.60 -30.70 11.66 19.84 0.23 -30.47 16 13 N -0.64 -19.87 3.02 -815.57 -2.46 -22.34 16 14 C 0.07 1.55 6.64 86.35 0.57 2.13 16 15 C 0.05 0.83 6.99 72.08 0.50 1.34 16 16 O -0.38 -7.63 10.74 -148.98 -1.60 -9.23 16 17 C 0.06 1.39 6.27 72.08 0.45 1.84 16 18 C 0.21 5.61 3.55 44.22 0.16 5.77 16 19 H 0.12 2.80 8.11 -2.39 -0.02 2.79 16 20 C 0.01 0.38 3.85 24.83 0.10 0.47 16 21 C -0.23 -7.06 10.79 22.19 0.24 -6.82 16 22 C -0.22 -6.98 10.91 22.19 0.24 -6.74 16 23 C -0.05 -1.77 11.83 66.97 0.79 -0.98 16 24 O -0.18 -6.94 8.31 21.27 0.18 -6.77 16 25 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 26 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 27 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 28 H 0.40 14.73 5.85 -92.71 -0.54 14.19 16 29 H 0.10 2.01 5.65 -2.38 -0.01 2.00 16 30 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.05 1.17 8.13 -2.39 -0.02 1.15 16 35 H 0.16 4.01 8.06 -2.91 -0.02 3.99 16 36 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 37 H 0.21 5.78 8.06 -2.91 -0.02 5.76 16 Total: -1.00 -76.98 309.03 2.24 -74.75 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.55 Total: 25.31 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 5.66 Total: 15.45 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -4.81 Total: -113.33 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -1.19 Total: -46.46 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -76.98 2.24 -74.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358467.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.930 kcal (2) G-P(sol) polarization free energy of solvation -76.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds