Wall clock time and date at job start Tue Mar 31 2020 02:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 N 1.34627 * 125.89385 * 265.02635 * 3 2 1 5 5 H 0.96997 * 124.81465 * 359.96142 * 4 3 2 6 6 C 1.36429 * 110.37921 * 179.97438 * 4 3 2 7 7 C 1.34431 * 109.08490 * 359.97438 * 6 4 3 8 8 C 1.37843 * 125.89744 * 84.71878 * 3 2 1 9 9 C 1.47108 * 127.02051 * 0.02562 * 8 3 2 10 10 O 1.21551 * 120.00491 * 0.02562 * 9 8 3 11 11 O 1.34797 * 119.99594 * 180.02562 * 9 8 3 12 12 C 1.45200 * 116.99554 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.46721 * 179.97438 * 12 11 9 14 14 O 1.21281 * 120.00175 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00194 * 179.97438 * 13 12 11 16 16 C 1.46501 * 120.00454 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47214 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99810 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99856 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00031 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00214 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47584 * 89.99569 * 21 19 17 23 23 H 1.48495 * 109.47322 * 210.00251 * 21 19 17 24 24 H 1.48506 * 109.46653 * 329.99943 * 21 19 17 25 25 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 30 30 H 1.08000 * 125.45578 * 180.02562 * 6 4 3 31 31 H 1.08003 * 126.81162 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.47466 * 299.99925 * 12 11 9 33 33 H 1.09001 * 109.47093 * 60.00589 * 12 11 9 34 34 H 0.97008 * 119.99440 * 0.02562 * 15 13 12 35 35 H 1.08996 * 109.47189 * 300.00620 * 16 15 13 36 36 H 1.09001 * 109.46498 * 60.00749 * 16 15 13 37 37 H 0.97003 * 120.00308 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3845 2.1335 -1.0865 5 1 2.3530 1.8047 -1.9985 6 6 2.7923 3.3837 -0.7230 7 6 2.7096 3.5017 0.6136 8 6 2.2048 2.2171 1.1119 9 6 1.9392 1.8527 2.5121 10 8 1.5217 0.7437 2.7829 11 8 2.1589 2.7486 3.4950 12 6 1.8744 2.3204 4.8529 13 6 2.1784 3.4454 5.8084 14 8 2.5934 4.5040 5.3865 15 7 1.9880 3.2756 7.1318 16 6 2.2840 4.3691 8.0608 17 6 1.9886 3.9247 9.4701 18 1 1.6171 2.9277 9.6553 19 6 2.1917 4.7914 10.5230 20 7 1.9334 4.4038 11.7529 21 14 2.8322 6.5166 10.2026 22 1 1.6874 7.4380 9.9889 23 1 3.6253 6.9752 11.3712 24 1 3.6931 6.5080 8.9926 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1270 4.1552 -1.4006 31 1 2.9621 4.3705 1.2033 32 1 0.8223 2.0477 4.9350 33 1 2.4937 1.4578 5.0992 34 1 1.6557 2.4290 7.4692 35 1 3.3364 4.6406 7.9788 36 1 1.6657 5.2323 7.8145 37 1 2.0766 5.0134 12.4938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803777198.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:46 Heat of formation + Delta-G solvation = -85.991859 kcal Electronic energy + Delta-G solvation = -20859.785092 eV Core-core repulsion = 17409.867379 eV Total energy + Delta-G solvation = -3449.917712 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.53166 -39.98378 -38.66029 -36.15158 -34.30824 -33.88675 -32.39197 -31.51883 -29.43206 -28.57124 -27.07945 -24.28830 -22.91707 -21.96191 -20.97531 -20.03851 -19.68555 -18.04166 -17.41548 -16.89668 -16.45049 -16.21255 -15.31419 -15.03200 -15.01080 -14.59271 -14.43103 -14.08024 -14.00072 -13.33586 -13.08496 -12.97096 -12.78907 -12.50757 -12.34954 -12.16368 -11.98873 -11.73942 -11.26122 -11.03302 -10.77794 -10.56357 -10.42734 -9.96976 -9.50550 -9.25654 -9.14287 -8.78410 -8.49895 -8.20640 -6.21242 -4.23958 1.32611 2.16925 2.46239 2.98751 3.10878 3.23325 3.28179 3.34814 3.43128 4.04657 4.33991 4.36788 4.64828 4.76015 4.99690 5.01976 5.13773 5.14890 5.22478 5.25937 5.30156 5.33226 5.53228 5.62087 5.77771 5.91849 5.96295 6.45442 6.49580 6.66430 6.78516 7.05546 7.09065 7.16360 7.36116 7.91877 8.10876 8.46500 8.73268 8.86075 9.38181 10.90586 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036297 B = 0.002979 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.221640 B = 9395.691627 C =10057.899312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C 0.118 3.882 4 N -0.547 5.547 5 H 0.417 0.583 6 C -0.028 4.028 7 C -0.137 4.137 8 C -0.222 4.222 9 C 0.540 3.460 10 O -0.522 6.522 11 O -0.325 6.325 12 C 0.051 3.949 13 C 0.502 3.498 14 O -0.536 6.536 15 N -0.701 5.701 16 C 0.222 3.778 17 C -0.545 4.545 18 H 0.081 0.919 19 C 0.078 3.922 20 N -0.892 5.892 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.260 1.260 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.172 0.828 31 H 0.155 0.845 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.399 0.601 35 H 0.028 0.972 36 H 0.023 0.977 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.465 -7.638 -27.431 28.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 C -0.002 4.002 4 N -0.142 5.142 5 H 0.254 0.746 6 C -0.154 4.154 7 C -0.161 4.161 8 C -0.231 4.231 9 C 0.386 3.614 10 O -0.414 6.414 11 O -0.239 6.239 12 C -0.026 4.026 13 C 0.286 3.714 14 O -0.414 6.414 15 N -0.351 5.351 16 C 0.100 3.900 17 C -0.583 4.583 18 H 0.099 0.901 19 C -0.126 4.126 20 N -0.529 5.529 21 Si 0.703 3.297 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.184 1.184 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.089 0.911 30 H 0.190 0.810 31 H 0.173 0.827 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.233 0.767 35 H 0.045 0.955 36 H 0.041 0.959 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.263 -7.094 -27.524 28.425 hybrid contribution 0.122 0.354 -0.102 0.389 sum -0.141 -6.740 -27.626 28.437 Atomic orbital electron populations 1.21673 0.93715 1.02304 1.02300 1.20345 0.96933 0.88784 1.04207 1.20577 0.99461 0.94564 0.85554 1.41550 1.51831 1.12147 1.08666 0.74569 1.21775 1.08972 0.87970 0.96660 1.22243 1.03018 0.97419 0.93383 1.19343 1.17842 0.96966 0.88910 1.20131 0.73842 0.82035 0.85349 1.90800 1.44022 1.22208 1.84340 1.86628 1.78755 1.43157 1.15408 1.22755 1.03275 0.97325 0.79267 1.19965 0.79538 0.88493 0.83443 1.90691 1.45467 1.27641 1.77586 1.46057 1.65408 1.18660 1.05013 1.19540 0.96441 0.85829 0.88144 1.21078 1.46490 1.02229 0.88463 0.90127 1.24789 0.94375 0.98694 0.94745 1.69879 1.47683 1.36580 0.98744 0.86814 0.79905 0.84414 0.78556 1.19805 1.20886 1.18427 0.93190 0.91748 0.91611 0.87787 0.91127 0.81043 0.82689 0.88446 0.88446 0.76739 0.95460 0.95914 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.89 37.16 0.37 -0.75 16 2 C -0.06 -0.52 5.80 -27.88 -0.16 -0.68 16 3 C 0.12 1.15 6.47 -81.51 -0.53 0.62 16 4 N -0.55 -3.76 5.89 -8.88 -0.05 -3.82 16 5 H 0.42 1.34 8.96 -40.82 -0.37 0.98 16 6 C -0.03 -0.22 11.87 -16.85 -0.20 -0.42 16 7 C -0.14 -1.56 11.00 -37.49 -0.41 -1.97 16 8 C -0.22 -2.87 6.33 -103.01 -0.65 -3.52 16 9 C 0.54 8.22 7.95 34.33 0.27 8.49 16 10 O -0.52 -8.17 14.63 -19.30 -0.28 -8.46 16 11 O -0.32 -5.49 9.66 -47.44 -0.46 -5.95 16 12 C 0.05 0.81 5.95 36.01 0.21 1.02 16 13 C 0.50 9.95 7.91 -10.99 -0.09 9.87 16 14 O -0.54 -12.75 16.50 -14.11 -0.23 -12.99 16 15 N -0.70 -14.29 5.55 -61.47 -0.34 -14.63 16 16 C 0.22 5.48 4.50 -5.19 -0.02 5.45 16 17 C -0.54 -14.93 9.83 -34.44 -0.34 -15.27 16 18 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 19 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 20 N -0.89 -26.49 13.96 55.43 0.77 -25.71 16 21 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.67 7.98 -51.93 -0.41 0.26 16 28 H 0.10 1.03 6.81 -51.93 -0.35 0.67 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.17 0.78 8.06 -52.49 -0.42 0.35 16 31 H 0.16 1.79 8.06 -52.48 -0.42 1.37 16 32 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.40 7.02 8.32 -40.82 -0.34 6.68 16 35 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 36 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 37 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -35.14 327.20 -6.75 -41.89 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -4.78 Total: 3.01 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -1.65 Total: 4.94 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.38 Total: -44.16 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.97 Total: -27.39 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.14 -6.75 -41.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803777198.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.100 kcal (2) G-P(sol) polarization free energy of solvation -35.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds