Wall clock time and date at job start Tue Mar 31 2020 01:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34513 * 125.78730 * 2 1 4 4 C 1.41386 * 106.84131 * 179.75019 * 3 2 1 5 5 C 1.34512 * 106.83662 * 0.36493 * 4 3 2 6 6 C 1.50706 * 125.79030 * 179.89304 * 5 4 3 7 7 H 1.08998 * 109.46456 * 359.71445 * 6 5 4 8 8 C 1.52997 * 109.47238 * 119.71611 * 6 5 4 9 9 C 1.50697 * 109.47178 * 239.72137 * 6 5 4 10 10 O 1.21283 * 120.00261 * 359.97438 * 9 6 5 11 11 N 1.34777 * 120.00075 * 180.02562 * 9 6 5 12 12 C 1.46500 * 120.00084 * 180.02562 * 11 9 6 13 13 C 1.50696 * 109.46995 * 179.97438 * 12 11 9 14 14 O 1.21294 * 120.00265 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99972 * 179.97438 * 13 12 11 16 16 C 1.37105 * 120.00241 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99552 * 0.02562 * 16 15 13 18 18 C 1.38945 * 119.99902 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00445 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99885 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46948 * 90.00429 * 20 18 16 22 22 H 1.48495 * 109.47555 * 210.00268 * 20 18 16 23 23 H 1.48503 * 109.47081 * 330.00728 * 20 18 16 24 24 O 1.34297 * 108.42369 * 359.62929 * 5 4 3 25 25 H 1.08995 * 109.47030 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47682 * 300.00727 * 1 2 3 27 27 H 1.09000 * 109.46758 * 60.00463 * 1 2 3 28 28 H 1.07998 * 126.58332 * 359.97438 * 3 2 1 29 29 H 1.07999 * 126.58426 * 180.23711 * 4 3 2 30 30 H 1.09002 * 109.47153 * 180.02562 * 8 6 5 31 31 H 1.09001 * 109.46832 * 60.00314 * 8 6 5 32 32 H 1.09004 * 109.47261 * 300.00295 * 8 6 5 33 33 H 0.96996 * 119.99636 * 359.97438 * 11 9 6 34 34 H 1.09001 * 109.47049 * 299.99628 * 12 11 9 35 35 H 1.09000 * 109.47381 * 59.99594 * 12 11 9 36 36 H 0.97004 * 120.00463 * 359.97438 * 15 13 12 37 37 H 0.96998 * 120.00371 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 0.0059 5 6 3.5814 -0.7121 0.0010 6 6 4.7706 -1.6378 0.0021 7 1 5.6885 -1.0500 0.0025 8 6 4.7292 -2.5198 1.2516 9 6 4.7316 -2.5073 -1.2281 10 8 3.8269 -2.3875 -2.0269 11 7 5.7014 -3.4189 -1.4401 12 6 5.6638 -4.2638 -2.6363 13 6 6.8528 -5.1895 -2.6351 14 8 7.6533 -5.1474 -1.7248 15 7 7.0269 -6.0643 -3.6454 16 6 8.1084 -6.9069 -3.6441 17 1 8.8207 -6.8699 -2.8331 18 6 8.2875 -7.8092 -4.6855 19 7 7.4205 -7.8545 -5.6720 20 14 9.7614 -8.9567 -4.6840 21 1 9.4067 -10.2171 -3.9833 22 1 10.1528 -9.2618 -6.0836 23 1 10.8965 -8.3037 -3.9836 24 8 2.2925 -1.0894 0.0007 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.9665 2.1204 -0.0004 29 1 4.5212 1.2434 0.0111 30 1 5.5895 -3.1890 1.2527 31 1 3.8112 -3.1076 1.2511 32 1 4.7574 -1.8908 2.1415 33 1 6.4247 -3.5149 -0.8010 34 1 4.7456 -4.8512 -2.6375 35 1 5.6940 -3.6352 -3.5263 36 1 6.3865 -6.0983 -4.3733 37 1 7.5457 -8.4841 -6.3992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804820658.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:22 Heat of formation + Delta-G solvation = -70.521615 kcal Electronic energy + Delta-G solvation = -21051.602597 eV Core-core repulsion = 17602.355724 eV Total energy + Delta-G solvation = -3449.246872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.63130 -39.67139 -38.15480 -34.50693 -34.34816 -33.65617 -33.16424 -31.42640 -31.18840 -27.74382 -26.59402 -24.80034 -23.60341 -21.80247 -20.67883 -19.83074 -19.52753 -18.17355 -17.37524 -16.60242 -16.07641 -15.58666 -15.43425 -15.26155 -14.54798 -14.43714 -14.25426 -13.84912 -13.49754 -13.33439 -13.26222 -13.05172 -12.80681 -12.50280 -12.22168 -12.18774 -11.94698 -11.67630 -11.62279 -11.57589 -11.13765 -10.47396 -10.33616 -9.89590 -9.68402 -9.65524 -8.83507 -8.66099 -8.30168 -8.12237 -6.53206 -3.95444 1.67939 2.54280 2.74277 2.86239 3.10455 3.20762 3.25201 3.37691 3.71747 4.09779 4.36832 4.71952 4.81718 4.85416 4.86573 4.99440 5.07488 5.15312 5.24787 5.27242 5.48611 5.53818 5.58544 5.78017 5.86696 5.89522 5.93721 5.98479 6.04524 6.13416 6.50058 6.63054 7.18880 7.44283 7.74464 7.89956 8.38109 8.43717 9.02578 9.37157 9.84745 10.63658 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.044130 B = 0.002895 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.333376 B = 9669.424798 C =10010.318540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.014 4.014 3 C -0.215 4.215 4 C -0.207 4.207 5 C 0.017 3.983 6 C -0.028 4.028 7 H 0.126 0.874 8 C -0.146 4.146 9 C 0.513 3.487 10 O -0.536 6.536 11 N -0.705 5.705 12 C 0.109 3.891 13 C 0.428 3.572 14 O -0.598 6.598 15 N -0.549 5.549 16 C -0.305 4.305 17 H 0.106 0.894 18 C 0.026 3.974 19 N -0.894 5.894 20 Si 0.933 3.067 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.268 1.268 24 O -0.157 6.157 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.411 0.589 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.396 0.604 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.671 14.189 10.916 20.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 C -0.234 4.234 4 C -0.226 4.226 5 C -0.034 4.034 6 C -0.050 4.050 7 H 0.144 0.856 8 C -0.204 4.204 9 C 0.298 3.702 10 O -0.412 6.412 11 N -0.359 5.359 12 C -0.019 4.019 13 C 0.214 3.786 14 O -0.485 6.485 15 N -0.183 5.183 16 C -0.435 4.435 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.535 5.535 20 Si 0.760 3.240 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.193 1.193 24 O -0.053 6.053 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.163 0.837 29 H 0.165 0.835 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.250 0.750 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.230 0.770 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.879 13.838 10.736 20.109 hybrid contribution 0.776 -0.446 -0.392 0.977 sum -9.103 13.392 10.344 19.215 Atomic orbital electron populations 1.20279 0.85351 1.04013 1.03275 1.22418 0.94015 0.84293 1.05769 1.21458 0.92618 0.99226 1.10142 1.21490 0.98312 0.93438 1.09342 1.21501 0.82779 0.93411 1.05687 1.19886 0.94430 0.95265 0.95388 0.85615 1.21831 1.03838 0.99500 0.95221 1.20295 0.82081 0.80724 0.87114 1.90727 1.34965 1.68848 1.46703 1.45655 1.27700 1.36971 1.25579 1.20965 0.98887 0.93558 0.88473 1.19722 0.88423 0.85171 0.85308 1.90492 1.47241 1.72996 1.37729 1.41804 1.24462 1.31474 1.20581 1.19732 1.02587 1.13154 1.08005 0.87647 1.25333 0.98921 0.98333 0.95132 1.69613 1.35944 1.37313 1.10582 0.85808 0.80794 0.79907 0.77495 1.20245 1.20783 1.19297 1.83980 1.15998 1.34703 1.70591 0.90606 0.89902 0.89768 0.83687 0.83537 0.90515 0.91453 0.90950 0.75042 0.89810 0.89816 0.77020 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.42 36.01 0.38 -0.21 16 2 C -0.01 -0.18 7.32 -35.62 -0.26 -0.44 16 3 C -0.22 -2.49 10.81 -39.70 -0.43 -2.92 16 4 C -0.21 -2.52 10.78 -39.70 -0.43 -2.95 16 5 C 0.02 0.24 5.20 -35.62 -0.19 0.05 16 6 C -0.03 -0.35 3.13 -92.92 -0.29 -0.64 16 7 H 0.13 1.19 8.10 -51.93 -0.42 0.77 16 8 C -0.15 -1.51 9.07 37.16 0.34 -1.17 16 9 C 0.51 8.25 7.15 -10.99 -0.08 8.18 16 10 O -0.54 -10.59 15.80 -1.24 -0.02 -10.61 16 11 N -0.70 -11.57 5.42 -61.47 -0.33 -11.91 16 12 C 0.11 2.01 6.15 -5.20 -0.03 1.98 16 13 C 0.43 9.74 7.85 -10.99 -0.09 9.65 16 14 O -0.60 -15.06 15.24 5.54 0.08 -14.97 16 15 N -0.55 -13.56 5.29 -10.96 -0.06 -13.62 16 16 C -0.31 -8.26 9.68 -14.93 -0.14 -8.40 16 17 H 0.11 2.96 7.16 -52.49 -0.38 2.59 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 19 N -0.89 -23.86 13.05 55.50 0.72 -23.14 16 20 Si 0.93 20.44 29.55 -169.99 -5.02 15.42 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 O -0.16 -2.35 10.35 -1.07 -0.01 -2.36 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.15 1.43 8.06 -52.49 -0.42 1.00 16 30 H 0.08 0.73 7.56 -51.93 -0.39 0.34 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.41 6.43 6.85 -40.82 -0.28 6.15 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 37 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 328.08 15.07 4.94 4.94 Total: -1.00 -33.01 328.08 -5.74 -38.75 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -4.73 Total: 13.79 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -1.32 Total: 3.71 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.33 Total: -48.66 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: 0.05 Total: -27.95 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.01 -5.74 -38.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804820658.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.772 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds