Wall clock time and date at job start Tue Mar 31 2020 01:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34513 * 125.78730 * 2 1 4 4 C 1.41386 * 106.84131 * 179.75019 * 3 2 1 5 5 C 1.34512 * 106.83662 * 0.36493 * 4 3 2 6 6 C 1.50706 * 125.79030 * 179.89304 * 5 4 3 7 7 H 1.08998 * 109.46456 * 359.71445 * 6 5 4 8 8 C 1.52997 * 109.47238 * 119.71611 * 6 5 4 9 9 C 1.50697 * 109.47178 * 239.72137 * 6 5 4 10 10 O 1.21283 * 120.00261 * 359.97438 * 9 6 5 11 11 N 1.34777 * 120.00075 * 180.02562 * 9 6 5 12 12 C 1.46500 * 120.00084 * 180.02562 * 11 9 6 13 13 C 1.50696 * 109.46995 * 179.97438 * 12 11 9 14 14 O 1.21294 * 120.00265 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99972 * 179.97438 * 13 12 11 16 16 C 1.37105 * 120.00241 * 180.02562 * 15 13 12 17 17 H 1.07998 * 119.99552 * 0.02562 * 16 15 13 18 18 C 1.38945 * 119.99902 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00445 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99885 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46948 * 90.00429 * 20 18 16 22 22 H 1.48495 * 109.47555 * 210.00268 * 20 18 16 23 23 H 1.48503 * 109.47081 * 330.00728 * 20 18 16 24 24 O 1.34297 * 108.42369 * 359.62929 * 5 4 3 25 25 H 1.08995 * 109.47030 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47682 * 300.00727 * 1 2 3 27 27 H 1.09000 * 109.46758 * 60.00463 * 1 2 3 28 28 H 1.07998 * 126.58332 * 359.97438 * 3 2 1 29 29 H 1.07999 * 126.58426 * 180.23711 * 4 3 2 30 30 H 1.09002 * 109.47153 * 180.02562 * 8 6 5 31 31 H 1.09001 * 109.46832 * 60.00314 * 8 6 5 32 32 H 1.09004 * 109.47261 * 300.00295 * 8 6 5 33 33 H 0.96996 * 119.99636 * 359.97438 * 11 9 6 34 34 H 1.09001 * 109.47049 * 299.99628 * 12 11 9 35 35 H 1.09000 * 109.47381 * 59.99594 * 12 11 9 36 36 H 0.97004 * 120.00463 * 359.97438 * 15 13 12 37 37 H 0.96998 * 120.00371 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 0.0059 5 6 3.5814 -0.7121 0.0010 6 6 4.7706 -1.6378 0.0021 7 1 5.6885 -1.0500 0.0025 8 6 4.7292 -2.5198 1.2516 9 6 4.7316 -2.5073 -1.2281 10 8 3.8269 -2.3875 -2.0269 11 7 5.7014 -3.4189 -1.4401 12 6 5.6638 -4.2638 -2.6363 13 6 6.8528 -5.1895 -2.6351 14 8 7.6533 -5.1474 -1.7248 15 7 7.0269 -6.0643 -3.6454 16 6 8.1084 -6.9069 -3.6441 17 1 8.8207 -6.8699 -2.8331 18 6 8.2875 -7.8092 -4.6855 19 7 7.4205 -7.8545 -5.6720 20 14 9.7614 -8.9567 -4.6840 21 1 9.4067 -10.2171 -3.9833 22 1 10.1528 -9.2618 -6.0836 23 1 10.8965 -8.3037 -3.9836 24 8 2.2925 -1.0894 0.0007 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.9665 2.1204 -0.0004 29 1 4.5212 1.2434 0.0111 30 1 5.5895 -3.1890 1.2527 31 1 3.8112 -3.1076 1.2511 32 1 4.7574 -1.8908 2.1415 33 1 6.4247 -3.5149 -0.8010 34 1 4.7456 -4.8512 -2.6375 35 1 5.6940 -3.6352 -3.5263 36 1 6.3865 -6.0983 -4.3733 37 1 7.5457 -8.4841 -6.3992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804820658.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:21 Heat of formation + Delta-G solvation = -93.608496 kcal Electronic energy + Delta-G solvation = -21052.603719 eV Core-core repulsion = 17602.355724 eV Total energy + Delta-G solvation = -3450.247995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.55765 -41.08289 -39.93207 -36.27602 -35.51712 -35.14649 -34.05614 -33.38322 -32.02217 -29.32364 -27.39795 -26.59210 -24.72703 -22.72040 -21.81498 -21.41566 -20.80302 -20.08197 -18.73473 -17.77050 -17.29052 -17.01853 -16.77573 -16.70420 -16.28610 -15.79538 -15.69004 -15.17168 -14.94016 -14.40255 -13.96945 -13.95038 -13.73682 -13.68274 -13.66844 -13.55274 -13.29950 -12.94796 -12.89989 -12.55693 -12.47339 -12.46166 -12.12850 -11.57689 -11.02670 -10.75951 -10.57576 -10.25738 -10.09993 -9.19681 -8.51930 -6.02388 0.74346 1.35826 1.42660 1.49256 1.55226 1.64180 1.89397 1.98081 2.08440 2.31796 3.10233 3.15242 3.47772 3.67447 3.93914 4.01122 4.15915 4.19117 4.24943 4.39447 4.40546 4.55292 4.71832 4.72732 4.76655 4.87133 4.93458 5.06690 5.16162 5.21627 5.31050 5.37626 5.68410 5.90517 6.28414 6.41889 6.48743 7.02154 7.09346 7.42792 7.92311 8.65044 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.044130 B = 0.002895 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.333376 B = 9669.424798 C =10010.318540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.031 4.031 3 C -0.224 4.224 4 C -0.206 4.206 5 C -0.014 4.014 6 C -0.021 4.021 7 H 0.157 0.843 8 C -0.141 4.141 9 C 0.514 3.486 10 O -0.575 6.575 11 N -0.702 5.702 12 C 0.120 3.880 13 C 0.434 3.566 14 O -0.621 6.621 15 N -0.560 5.560 16 C -0.337 4.337 17 H 0.088 0.912 18 C -0.011 4.011 19 N -0.917 5.917 20 Si 0.998 3.002 21 H -0.270 1.270 22 H -0.272 1.272 23 H -0.269 1.269 24 O -0.187 6.187 25 H 0.071 0.929 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.171 0.829 29 H 0.170 0.830 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.417 0.583 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.398 0.602 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.544 15.162 11.629 21.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.081 4.081 3 C -0.243 4.243 4 C -0.225 4.225 5 C -0.064 4.064 6 C -0.042 4.042 7 H 0.175 0.825 8 C -0.199 4.199 9 C 0.301 3.699 10 O -0.455 6.455 11 N -0.356 5.356 12 C -0.008 4.008 13 C 0.221 3.779 14 O -0.509 6.509 15 N -0.195 5.195 16 C -0.466 4.466 17 H 0.106 0.894 18 C -0.212 4.212 19 N -0.557 5.557 20 Si 0.821 3.179 21 H -0.195 1.195 22 H -0.197 1.197 23 H -0.193 1.193 24 O -0.084 6.084 25 H 0.090 0.910 26 H 0.125 0.875 27 H 0.116 0.884 28 H 0.188 0.812 29 H 0.187 0.813 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.256 0.744 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.232 0.768 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.758 14.824 11.463 21.128 hybrid contribution 0.665 -0.669 -0.587 1.111 sum -9.093 14.155 10.876 20.033 Atomic orbital electron populations 1.20462 0.82954 1.04359 1.05093 1.23255 0.95653 0.84036 1.05163 1.21854 0.92366 1.00325 1.09778 1.21897 0.99552 0.93174 1.07919 1.21840 0.82779 0.94330 1.07471 1.19983 0.95488 0.94990 0.93714 0.82527 1.21827 1.03255 0.99531 0.95246 1.21013 0.80841 0.80280 0.87772 1.90706 1.36373 1.69965 1.48419 1.45648 1.28166 1.36849 1.24952 1.20773 0.96847 0.93189 0.89955 1.20348 0.88843 0.84595 0.84082 1.90469 1.48465 1.73576 1.38417 1.41862 1.24350 1.32012 1.21307 1.19753 1.03529 1.14894 1.08407 0.89405 1.26148 1.01431 0.99242 0.94379 1.69682 1.37196 1.37900 1.10962 0.84859 0.77367 0.77845 0.77871 1.19544 1.19715 1.19310 1.83961 1.16902 1.36261 1.71325 0.91003 0.87454 0.88421 0.81184 0.81267 0.89801 0.93113 0.88673 0.74413 0.89123 0.88923 0.76774 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.42 71.24 0.74 -0.33 16 2 C -0.03 -0.73 7.32 24.83 0.18 -0.55 16 3 C -0.22 -4.79 10.81 22.19 0.24 -4.55 16 4 C -0.21 -4.67 10.78 22.19 0.24 -4.43 16 5 C -0.01 -0.37 5.20 24.83 0.13 -0.24 16 6 C -0.02 -0.48 3.13 -12.29 -0.04 -0.52 16 7 H 0.16 2.57 8.10 -2.39 -0.02 2.55 16 8 C -0.14 -2.71 9.07 71.98 0.65 -2.06 16 9 C 0.51 16.23 7.15 87.66 0.63 16.86 16 10 O -0.58 -22.82 15.80 3.46 0.05 -22.77 16 11 N -0.70 -22.58 5.42 -466.79 -2.53 -25.11 16 12 C 0.12 4.42 6.15 85.63 0.53 4.94 16 13 C 0.43 19.86 7.85 87.66 0.69 20.55 16 14 O -0.62 -31.42 15.24 -3.07 -0.05 -31.47 16 15 N -0.56 -28.07 5.29 -306.99 -1.62 -29.69 16 16 C -0.34 -18.44 9.68 84.04 0.81 -17.62 16 17 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 18 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 19 N -0.92 -48.81 13.05 21.66 0.28 -48.53 16 20 Si 1.00 41.54 29.55 68.60 2.03 43.56 16 21 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 O -0.19 -5.59 10.35 4.08 0.04 -5.55 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 29 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 30 H 0.08 1.47 7.56 -2.39 -0.02 1.45 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.42 12.66 6.85 -92.71 -0.64 12.02 16 34 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 35 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 36 H 0.40 19.30 7.90 -92.71 -0.73 18.56 16 37 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -71.23 328.08 3.22 -68.01 By element: Atomic # 1 Polarization: 39.88 SS G_CDS: -0.26 Total: 39.62 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 5.27 Total: 11.93 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -3.87 Total: -103.33 kcal Atomic # 8 Polarization: -59.84 SS G_CDS: 0.05 Total: -59.79 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Total: -71.23 3.22 -68.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804820658.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.599 kcal (2) G-P(sol) polarization free energy of solvation -71.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds