Wall clock time and date at job start Tue Mar 31 2020 01:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34514 * 125.78553 * 2 1 4 4 C 1.41386 * 106.83824 * 180.02562 * 3 2 1 5 5 C 1.34519 * 106.83815 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.78768 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47247 * 0.02562 * 6 5 4 8 8 C 1.52997 * 109.47265 * 240.00128 * 6 5 4 9 9 C 1.50696 * 109.47192 * 120.00257 * 6 5 4 10 10 O 1.21284 * 120.00109 * 0.02562 * 9 6 5 11 11 N 1.34777 * 120.00137 * 180.02562 * 9 6 5 12 12 C 1.46506 * 119.99873 * 180.02562 * 11 9 6 13 13 C 1.50699 * 109.46928 * 179.97438 * 12 11 9 14 14 O 1.21297 * 119.99980 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00037 * 179.97438 * 13 12 11 16 16 C 1.37097 * 119.99944 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00055 * 0.02562 * 16 15 13 18 18 C 1.38948 * 119.99682 * 180.02562 * 16 15 13 19 19 N 1.31416 * 120.00213 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99894 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47376 * 59.99761 * 20 18 16 22 22 H 1.48496 * 109.47319 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46921 * 299.99770 * 20 18 16 24 24 O 1.34294 * 125.78848 * 180.35297 * 2 1 3 25 25 H 1.09006 * 109.47022 * 89.99736 * 1 2 3 26 26 H 1.08994 * 109.47251 * 209.99666 * 1 2 3 27 27 H 1.09000 * 109.47226 * 330.00209 * 1 2 3 28 28 H 1.07998 * 126.58141 * 0.02562 * 3 2 1 29 29 H 1.07997 * 126.58190 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47045 * 60.00159 * 8 6 5 31 31 H 1.08998 * 109.47624 * 179.97438 * 8 6 5 32 32 H 1.09000 * 109.47140 * 300.00252 * 8 6 5 33 33 H 0.96999 * 120.00047 * 359.97438 * 11 9 6 34 34 H 1.09004 * 109.47073 * 299.99562 * 12 11 9 35 35 H 1.09000 * 109.47212 * 59.99645 * 12 11 9 36 36 H 0.96996 * 119.99844 * 0.02562 * 15 13 12 37 37 H 0.97002 * 120.00016 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7706 -1.6378 -0.0030 7 1 5.6885 -1.0501 -0.0027 8 6 4.7292 -2.5193 -1.2528 9 6 4.7314 -2.5079 1.2269 10 8 3.8266 -2.3884 2.0257 11 7 5.7018 -3.4187 1.4391 12 6 5.6634 -4.2649 2.6345 13 6 6.8527 -5.1905 2.6331 14 8 7.6533 -5.1479 1.7229 15 7 7.0266 -6.0657 3.6432 16 6 8.1083 -6.9081 3.6417 17 1 8.8212 -6.8701 2.8312 18 6 8.2873 -7.8107 4.6828 19 7 7.4196 -7.8572 5.6686 20 14 9.7615 -8.9580 4.6811 21 1 11.0120 -8.1572 4.6815 22 1 9.7222 -9.8162 5.8924 23 1 9.7217 -9.8132 3.4677 24 8 2.2924 -1.0894 -0.0067 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3634 0.8900 0.5138 28 1 1.9665 2.1204 0.0004 29 1 4.5212 1.2434 -0.0004 30 1 4.7576 -1.8900 -2.1423 31 1 5.5896 -3.1886 -1.2541 32 1 3.8113 -3.1071 -1.2526 33 1 6.4253 -3.5146 0.8001 34 1 5.6922 -3.6372 3.5251 35 1 4.7457 -4.8531 2.6340 36 1 6.3862 -6.1000 4.3708 37 1 7.5448 -8.4871 6.3956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804820659.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:25 Heat of formation + Delta-G solvation = -70.482947 kcal Electronic energy + Delta-G solvation = -21051.402306 eV Core-core repulsion = 17602.157110 eV Total energy + Delta-G solvation = -3449.245196 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.63141 -39.67067 -38.15312 -34.50602 -34.34788 -33.65488 -33.16797 -31.42522 -31.18708 -27.74274 -26.59294 -24.79844 -23.60170 -21.80664 -20.67845 -19.83029 -19.52645 -18.17335 -17.37588 -16.60389 -16.07845 -15.58549 -15.43462 -15.26115 -14.54652 -14.43285 -14.25666 -13.84677 -13.50385 -13.32543 -13.26159 -13.05753 -12.80915 -12.50008 -12.21953 -12.19051 -11.94413 -11.67240 -11.62019 -11.56813 -11.11612 -10.52097 -10.33052 -9.89848 -9.68464 -9.64465 -8.83455 -8.66003 -8.30408 -8.12139 -6.53016 -3.95309 1.67852 2.54457 2.74278 2.85981 3.12567 3.20436 3.23165 3.37655 3.71888 4.09837 4.36774 4.71740 4.81406 4.85450 4.86466 4.99596 5.06827 5.15391 5.25982 5.27102 5.48860 5.53745 5.58506 5.77800 5.86653 5.89591 5.93794 5.98513 6.04614 6.13236 6.50012 6.63081 7.18706 7.44164 7.74526 7.89796 8.38158 8.43869 9.02555 9.37187 9.84878 10.63753 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.044125 B = 0.002895 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.412932 B = 9669.612674 C =10010.099877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.014 4.014 3 C -0.215 4.215 4 C -0.207 4.207 5 C 0.018 3.982 6 C -0.028 4.028 7 H 0.126 0.874 8 C -0.146 4.146 9 C 0.513 3.487 10 O -0.536 6.536 11 N -0.705 5.705 12 C 0.109 3.891 13 C 0.428 3.572 14 O -0.598 6.598 15 N -0.548 5.548 16 C -0.306 4.306 17 H 0.105 0.895 18 C 0.026 3.974 19 N -0.895 5.895 20 Si 0.934 3.066 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 O -0.157 6.157 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.411 0.589 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.396 0.604 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.670 14.179 -10.878 20.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 C -0.234 4.234 4 C -0.226 4.226 5 C -0.033 4.033 6 C -0.050 4.050 7 H 0.144 0.856 8 C -0.204 4.204 9 C 0.298 3.702 10 O -0.413 6.413 11 N -0.359 5.359 12 C -0.019 4.019 13 C 0.214 3.786 14 O -0.485 6.485 15 N -0.183 5.183 16 C -0.436 4.436 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.535 5.535 20 Si 0.761 3.239 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.198 1.198 24 O -0.053 6.053 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.163 0.837 29 H 0.165 0.835 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.250 0.750 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.230 0.770 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.883 13.823 -10.697 20.079 hybrid contribution 0.787 -0.437 0.380 0.977 sum -9.096 13.386 -10.317 19.193 Atomic orbital electron populations 1.20280 0.85349 1.04065 1.03218 1.22419 0.94016 0.84297 1.05754 1.21476 0.92620 0.99192 1.10121 1.21492 0.98318 0.93448 1.09340 1.21503 0.82771 0.93399 1.05672 1.19885 0.94428 0.95264 0.95394 0.85611 1.21829 1.03841 0.99506 0.95215 1.20296 0.82077 0.80731 0.87109 1.90727 1.34974 1.68852 1.46697 1.45657 1.27654 1.36967 1.25628 1.20966 0.98885 0.93530 0.88497 1.19723 0.88431 0.85178 0.85317 1.90491 1.47243 1.73007 1.37736 1.41793 1.24433 1.31456 1.20597 1.19684 1.02588 1.13212 1.08066 0.87696 1.25334 0.98906 0.98317 0.95134 1.69609 1.35876 1.37377 1.10599 0.85865 0.80793 0.79559 0.77711 1.19752 1.20842 1.19757 1.83971 1.15994 1.34700 1.70643 0.90314 0.90489 0.89503 0.83690 0.83534 0.90954 0.90515 0.91449 0.75041 0.89808 0.89821 0.77018 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.42 36.01 0.38 -0.21 16 2 C -0.01 -0.17 7.32 -35.62 -0.26 -0.44 16 3 C -0.21 -2.48 10.81 -39.70 -0.43 -2.91 16 4 C -0.21 -2.52 10.78 -39.70 -0.43 -2.95 16 5 C 0.02 0.24 5.20 -35.62 -0.19 0.06 16 6 C -0.03 -0.35 3.13 -92.93 -0.29 -0.64 16 7 H 0.13 1.19 8.10 -51.93 -0.42 0.77 16 8 C -0.15 -1.51 9.07 37.16 0.34 -1.17 16 9 C 0.51 8.26 7.15 -10.99 -0.08 8.18 16 10 O -0.54 -10.60 15.81 -0.87 -0.01 -10.61 16 11 N -0.70 -11.58 5.42 -61.47 -0.33 -11.91 16 12 C 0.11 2.01 6.15 -5.19 -0.03 1.98 16 13 C 0.43 9.74 7.85 -10.99 -0.09 9.65 16 14 O -0.60 -15.06 15.24 5.54 0.08 -14.98 16 15 N -0.55 -13.56 5.29 -10.96 -0.06 -13.62 16 16 C -0.31 -8.28 9.68 -14.93 -0.14 -8.43 16 17 H 0.11 2.94 7.16 -52.48 -0.38 2.57 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 19 N -0.89 -23.86 13.05 55.50 0.72 -23.14 16 20 Si 0.93 20.45 29.55 -169.99 -5.02 15.43 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 O -0.16 -2.36 10.36 -0.69 -0.01 -2.36 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.74 7.57 -51.93 -0.39 0.34 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.41 6.44 6.86 -40.82 -0.28 6.16 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.40 9.45 7.90 -40.82 -0.32 9.12 16 37 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 328.10 15.07 4.94 4.94 Total: -1.00 -32.98 328.10 -5.73 -38.72 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -4.73 Total: 13.83 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -1.32 Total: 3.70 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.33 Total: -48.67 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: 0.06 Total: -27.95 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.98 -5.73 -38.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804820659.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.768 kcal (2) G-P(sol) polarization free energy of solvation -32.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds