Wall clock time and date at job start Tue Mar 31 2020 01:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34514 * 125.78553 * 2 1 4 4 C 1.41386 * 106.83824 * 180.02562 * 3 2 1 5 5 C 1.34519 * 106.83815 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.78768 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47247 * 0.02562 * 6 5 4 8 8 C 1.52997 * 109.47265 * 240.00128 * 6 5 4 9 9 C 1.50696 * 109.47192 * 120.00257 * 6 5 4 10 10 O 1.21284 * 120.00109 * 0.02562 * 9 6 5 11 11 N 1.34777 * 120.00137 * 180.02562 * 9 6 5 12 12 C 1.46506 * 119.99873 * 180.02562 * 11 9 6 13 13 C 1.50699 * 109.46928 * 179.97438 * 12 11 9 14 14 O 1.21297 * 119.99980 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00037 * 179.97438 * 13 12 11 16 16 C 1.37097 * 119.99944 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00055 * 0.02562 * 16 15 13 18 18 C 1.38948 * 119.99682 * 180.02562 * 16 15 13 19 19 N 1.31416 * 120.00213 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99894 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47376 * 59.99761 * 20 18 16 22 22 H 1.48496 * 109.47319 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46921 * 299.99770 * 20 18 16 24 24 O 1.34294 * 125.78848 * 180.35297 * 2 1 3 25 25 H 1.09006 * 109.47022 * 89.99736 * 1 2 3 26 26 H 1.08994 * 109.47251 * 209.99666 * 1 2 3 27 27 H 1.09000 * 109.47226 * 330.00209 * 1 2 3 28 28 H 1.07998 * 126.58141 * 0.02562 * 3 2 1 29 29 H 1.07997 * 126.58190 * 180.02562 * 4 3 2 30 30 H 1.09002 * 109.47045 * 60.00159 * 8 6 5 31 31 H 1.08998 * 109.47624 * 179.97438 * 8 6 5 32 32 H 1.09000 * 109.47140 * 300.00252 * 8 6 5 33 33 H 0.96999 * 120.00047 * 359.97438 * 11 9 6 34 34 H 1.09004 * 109.47073 * 299.99562 * 12 11 9 35 35 H 1.09000 * 109.47212 * 59.99645 * 12 11 9 36 36 H 0.96996 * 119.99844 * 0.02562 * 15 13 12 37 37 H 0.97002 * 120.00016 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7122 -0.0015 6 6 4.7706 -1.6378 -0.0030 7 1 5.6885 -1.0501 -0.0027 8 6 4.7292 -2.5193 -1.2528 9 6 4.7314 -2.5079 1.2269 10 8 3.8266 -2.3884 2.0257 11 7 5.7018 -3.4187 1.4391 12 6 5.6634 -4.2649 2.6345 13 6 6.8527 -5.1905 2.6331 14 8 7.6533 -5.1479 1.7229 15 7 7.0266 -6.0657 3.6432 16 6 8.1083 -6.9081 3.6417 17 1 8.8212 -6.8701 2.8312 18 6 8.2873 -7.8107 4.6828 19 7 7.4196 -7.8572 5.6686 20 14 9.7615 -8.9580 4.6811 21 1 11.0120 -8.1572 4.6815 22 1 9.7222 -9.8162 5.8924 23 1 9.7217 -9.8132 3.4677 24 8 2.2924 -1.0894 -0.0067 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3634 0.8900 0.5138 28 1 1.9665 2.1204 0.0004 29 1 4.5212 1.2434 -0.0004 30 1 4.7576 -1.8900 -2.1423 31 1 5.5896 -3.1886 -1.2541 32 1 3.8113 -3.1071 -1.2526 33 1 6.4253 -3.5146 0.8001 34 1 5.6922 -3.6372 3.5251 35 1 4.7457 -4.8531 2.6340 36 1 6.3862 -6.1000 4.3708 37 1 7.5448 -8.4871 6.3956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804820659.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:24 Heat of formation + Delta-G solvation = -93.569783 kcal Electronic energy + Delta-G solvation = -21052.403426 eV Core-core repulsion = 17602.157110 eV Total energy + Delta-G solvation = -3450.246316 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.55768 -41.08240 -39.93100 -36.27508 -35.51683 -35.14615 -34.05968 -33.38207 -32.02129 -29.32290 -27.39736 -26.58999 -24.72588 -22.72400 -21.81498 -21.41478 -20.80296 -20.08128 -18.73562 -17.77050 -17.29238 -17.01715 -16.77508 -16.70527 -16.28670 -15.79704 -15.69158 -15.16656 -14.93973 -14.40442 -13.97120 -13.93512 -13.75269 -13.68381 -13.66848 -13.54611 -13.29935 -12.94845 -12.89193 -12.55666 -12.47755 -12.45125 -12.14022 -11.56743 -11.02716 -10.76288 -10.57504 -10.25745 -10.09987 -9.20130 -8.51706 -6.02254 0.74163 1.37554 1.42622 1.49294 1.53532 1.64266 1.89635 1.97965 2.08396 2.31884 3.10317 3.15381 3.47635 3.67447 3.93764 4.00940 4.16048 4.19055 4.24607 4.39463 4.40527 4.56996 4.70822 4.72292 4.76545 4.86849 4.93637 5.06776 5.16137 5.21553 5.30787 5.37435 5.68371 5.90419 6.28213 6.41952 6.48823 7.02097 7.09333 7.42828 7.92394 8.65003 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.044125 B = 0.002895 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.412932 B = 9669.612674 C =10010.099877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.031 4.031 3 C -0.224 4.224 4 C -0.207 4.207 5 C -0.014 4.014 6 C -0.021 4.021 7 H 0.157 0.843 8 C -0.141 4.141 9 C 0.514 3.486 10 O -0.575 6.575 11 N -0.702 5.702 12 C 0.120 3.880 13 C 0.434 3.566 14 O -0.621 6.621 15 N -0.560 5.560 16 C -0.338 4.338 17 H 0.088 0.912 18 C -0.011 4.011 19 N -0.917 5.917 20 Si 0.998 3.002 21 H -0.269 1.269 22 H -0.273 1.273 23 H -0.269 1.269 24 O -0.188 6.188 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.171 0.829 29 H 0.170 0.830 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.417 0.583 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.398 0.602 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.524 15.176 -11.603 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.081 4.081 3 C -0.243 4.243 4 C -0.226 4.226 5 C -0.064 4.064 6 C -0.042 4.042 7 H 0.175 0.825 8 C -0.199 4.199 9 C 0.301 3.699 10 O -0.455 6.455 11 N -0.356 5.356 12 C -0.008 4.008 13 C 0.221 3.779 14 O -0.509 6.509 15 N -0.195 5.195 16 C -0.467 4.467 17 H 0.106 0.894 18 C -0.212 4.212 19 N -0.557 5.557 20 Si 0.821 3.179 21 H -0.194 1.194 22 H -0.197 1.197 23 H -0.194 1.194 24 O -0.085 6.085 25 H 0.115 0.885 26 H 0.089 0.911 27 H 0.127 0.873 28 H 0.188 0.812 29 H 0.187 0.813 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.256 0.744 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.232 0.768 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.742 14.835 -11.437 21.113 hybrid contribution 0.671 -0.666 0.575 1.107 sum -9.070 14.168 -10.861 20.024 Atomic orbital electron populations 1.20463 0.82959 1.04807 1.04636 1.23256 0.95653 0.84045 1.05180 1.21876 0.92359 1.00304 1.09714 1.21902 0.99566 0.93186 1.07921 1.21843 0.82772 0.94319 1.07447 1.19983 0.95489 0.94987 0.93719 0.82519 1.21825 1.03257 0.99538 0.95241 1.21014 0.80838 0.80288 0.87767 1.90705 1.36382 1.69969 1.48413 1.45650 1.28121 1.36842 1.25001 1.20775 0.96842 0.93166 0.89980 1.20349 0.88851 0.84602 0.84090 1.90469 1.48463 1.73584 1.38419 1.41853 1.24325 1.31997 1.21323 1.19722 1.03540 1.14944 1.08486 0.89387 1.26151 1.01422 0.99225 0.94379 1.69680 1.37130 1.37948 1.10969 0.84918 0.77424 0.77577 0.78026 1.19376 1.19716 1.19421 1.83950 1.16897 1.36265 1.71373 0.88483 0.91097 0.87347 0.81150 0.81264 0.88677 0.89799 0.93112 0.74411 0.88915 0.89139 0.76776 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.42 71.24 0.74 -0.33 16 2 C -0.03 -0.74 7.32 24.83 0.18 -0.56 16 3 C -0.22 -4.77 10.81 22.19 0.24 -4.53 16 4 C -0.21 -4.67 10.78 22.19 0.24 -4.44 16 5 C -0.01 -0.36 5.20 24.83 0.13 -0.23 16 6 C -0.02 -0.48 3.13 -12.29 -0.04 -0.52 16 7 H 0.16 2.57 8.10 -2.39 -0.02 2.55 16 8 C -0.14 -2.71 9.07 71.98 0.65 -2.06 16 9 C 0.51 16.24 7.15 87.66 0.63 16.86 16 10 O -0.58 -22.83 15.81 3.10 0.05 -22.78 16 11 N -0.70 -22.59 5.42 -466.77 -2.53 -25.12 16 12 C 0.12 4.42 6.15 85.63 0.53 4.94 16 13 C 0.43 19.85 7.85 87.66 0.69 20.54 16 14 O -0.62 -31.41 15.24 -3.08 -0.05 -31.46 16 15 N -0.56 -28.06 5.29 -306.98 -1.62 -29.68 16 16 C -0.34 -18.50 9.68 84.04 0.81 -17.68 16 17 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 18 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 19 N -0.92 -48.83 13.05 21.66 0.28 -48.54 16 20 Si 1.00 41.51 29.55 68.60 2.03 43.54 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 24 O -0.19 -5.60 10.36 3.72 0.04 -5.56 16 25 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 29 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.47 7.57 -2.39 -0.02 1.46 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.42 12.66 6.86 -92.71 -0.64 12.02 16 34 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 35 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 36 H 0.40 19.30 7.90 -92.71 -0.73 18.57 16 37 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -71.19 328.10 3.21 -67.99 By element: Atomic # 1 Polarization: 39.99 SS G_CDS: -0.26 Total: 39.73 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 5.27 Total: 11.90 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -3.87 Total: -103.35 kcal Atomic # 8 Polarization: -59.85 SS G_CDS: 0.04 Total: -59.81 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -71.19 3.21 -67.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804820659.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.583 kcal (2) G-P(sol) polarization free energy of solvation -71.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds