Wall clock time and date at job start Tue Mar 31 2020 02:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00425 * 2 1 4 4 N 1.46496 * 109.46901 * 125.00115 * 3 2 1 5 5 C 1.46494 * 120.00227 * 269.99718 * 4 3 2 6 6 C 1.50700 * 109.47617 * 270.00259 * 5 4 3 7 7 H 1.08004 * 119.99727 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99988 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99939 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00415 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47253 * 89.99314 * 10 8 6 12 12 H 1.48497 * 109.47047 * 209.99548 * 10 8 6 13 13 H 1.48503 * 109.46720 * 329.99494 * 10 8 6 14 14 C 1.34776 * 120.00021 * 90.00739 * 4 3 2 15 15 O 1.21286 * 120.00043 * 179.97438 * 14 4 3 16 16 C 1.50703 * 119.99961 * 359.97438 * 14 4 3 17 17 O 1.42901 * 109.47311 * 180.02562 * 16 14 4 18 18 C 1.35706 * 117.00447 * 180.02562 * 17 16 14 19 19 C 1.41923 * 126.88027 * 179.71253 * 18 17 16 20 20 C 1.35282 * 103.95813 * 180.26245 * 19 18 17 21 21 C 1.50699 * 126.70590 * 180.02562 * 20 19 18 22 22 O 1.34082 * 106.57892 * 359.97438 * 20 19 18 23 23 N 1.20905 * 111.72206 * 359.97438 * 22 20 19 24 24 H 1.08003 * 120.00031 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.00094 * 180.02562 * 1 2 3 26 26 H 1.08010 * 119.99649 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47020 * 5.00158 * 3 2 1 28 28 H 1.08998 * 109.47012 * 245.00273 * 3 2 1 29 29 H 1.09002 * 109.46931 * 30.00510 * 5 4 3 30 30 H 1.09007 * 109.47052 * 150.00135 * 5 4 3 31 31 H 0.97001 * 120.00187 * 180.02562 * 9 8 6 32 32 H 1.09005 * 109.46804 * 60.00727 * 16 14 4 33 33 H 1.08992 * 109.47424 * 300.00681 * 16 14 4 34 34 H 1.07996 * 128.02642 * 0.23894 * 19 18 17 35 35 H 1.09002 * 109.46727 * 179.97438 * 21 20 19 36 36 H 1.08997 * 109.47372 * 299.95101 * 21 20 19 37 37 H 1.08998 * 109.47308 * 59.95142 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3317 1.1314 5 6 2.5590 1.8648 2.4248 6 6 2.8445 3.3434 2.4805 7 1 3.3036 3.8369 1.6365 8 6 2.5188 4.0664 3.6083 9 7 2.7675 5.3570 3.6567 10 14 1.7242 3.2131 5.0677 11 1 2.7801 2.7227 5.9895 12 1 0.8475 4.1732 5.7853 13 1 0.9133 2.0651 4.5884 14 6 4.2497 0.8660 0.9823 15 8 5.0200 0.8885 1.9189 16 6 4.6969 0.3173 -0.3481 17 8 6.0570 -0.1111 -0.2539 18 6 6.6173 -0.6341 -1.3738 19 6 7.9444 -1.1161 -1.5169 20 6 8.0079 -1.5194 -2.8066 21 6 9.2001 -2.1217 -3.5044 22 8 6.8024 -1.2795 -3.3423 23 7 6.0443 -0.7906 -2.5372 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6213 1.4025 -0.9314 29 1 1.4889 1.6965 2.5459 30 1 3.0991 1.3600 3.2259 31 1 2.5387 5.8656 4.4503 32 1 4.6121 1.0938 -1.1084 33 1 4.0678 -0.5296 -0.6220 34 1 8.7233 -1.1522 -0.7696 35 1 8.9414 -2.3433 -4.5398 36 1 10.0300 -1.4156 -3.4807 37 1 9.4913 -3.0417 -2.9974 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814137612.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:02 Heat of formation + Delta-G solvation = -1.351166 kcal Electronic energy + Delta-G solvation = -21396.147414 eV Core-core repulsion = 17949.899997 eV Total energy + Delta-G solvation = -3446.247417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.96589 -41.28202 -39.63932 -37.41111 -35.14099 -34.77854 -33.86298 -33.57954 -31.28758 -29.18987 -28.47257 -27.01557 -24.53452 -24.47469 -22.35371 -21.27508 -20.23499 -19.17745 -18.97467 -18.93503 -18.11599 -17.82366 -17.30531 -17.16702 -16.27780 -15.90960 -15.69764 -15.11814 -14.90387 -14.62631 -14.41526 -14.26454 -14.05382 -13.90914 -13.61462 -13.23983 -13.18068 -13.10851 -12.83792 -12.54196 -12.31070 -12.13993 -11.99003 -11.78109 -10.93510 -10.86625 -10.51948 -10.40059 -10.27953 -9.64025 -8.37563 -6.43828 0.44143 1.10011 1.17405 1.31304 1.34991 1.37394 1.43528 1.49190 2.19002 2.28135 2.45174 2.96417 3.08785 3.33504 3.75480 3.82904 3.88088 3.98296 4.00600 4.13434 4.33020 4.38380 4.68187 4.74806 4.79161 4.80749 4.83496 4.91067 5.01114 5.28120 5.35400 5.40181 5.66152 5.80606 5.84272 6.17164 6.40486 6.57405 7.05186 7.21179 7.23130 8.79347 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022963 B = 0.003919 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.081508 B = 7142.563032 C = 7924.350562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.191 4.191 3 C 0.127 3.873 4 N -0.586 5.586 5 C 0.229 3.771 6 C -0.541 4.541 7 H 0.029 0.971 8 C 0.014 3.986 9 N -0.943 5.943 10 Si 0.947 3.053 11 H -0.276 1.276 12 H -0.272 1.272 13 H -0.237 1.237 14 C 0.504 3.496 15 O -0.573 6.573 16 C 0.063 3.937 17 O -0.284 6.284 18 C 0.185 3.815 19 C -0.253 4.253 20 C 0.012 3.988 21 C -0.073 4.073 22 O 0.097 5.903 23 N -0.430 5.430 24 H 0.104 0.896 25 H 0.120 0.880 26 H 0.114 0.886 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.056 0.944 30 H 0.020 0.980 31 H 0.270 0.730 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.194 0.806 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.126 -18.243 -16.240 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.210 4.210 3 C 0.005 3.995 4 N -0.317 5.317 5 C 0.107 3.893 6 C -0.580 4.580 7 H 0.048 0.952 8 C -0.185 4.185 9 N -0.583 5.583 10 Si 0.769 3.231 11 H -0.202 1.202 12 H -0.197 1.197 13 H -0.160 1.160 14 C 0.291 3.709 15 O -0.453 6.453 16 C -0.015 4.015 17 O -0.190 6.190 18 C -0.012 4.012 19 C -0.275 4.275 20 C -0.052 4.052 21 C -0.129 4.129 22 O 0.036 5.964 23 N -0.157 5.157 24 H 0.122 0.878 25 H 0.138 0.862 26 H 0.132 0.868 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.135 0.865 34 H 0.211 0.789 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.386 -17.744 -15.826 24.177 hybrid contribution 0.224 0.547 1.450 1.566 sum 4.610 -17.196 -14.376 22.883 Atomic orbital electron populations 1.24114 0.95221 1.03303 0.96941 1.23241 0.96991 0.97667 1.03097 1.20964 0.92865 0.97326 0.88333 1.47873 1.10793 1.59373 1.13623 1.19382 0.95850 0.92241 0.81804 1.21523 1.41049 0.93300 1.02106 0.95215 1.25836 0.95811 0.95360 1.01480 1.70042 1.49131 1.08503 1.30598 0.85730 0.79111 0.79465 0.78776 1.20186 1.19723 1.15971 1.20456 0.82350 0.78530 0.89585 1.90683 1.53619 1.57536 1.43447 1.22491 0.81416 1.01979 0.95625 1.86246 1.28081 1.76042 1.28628 1.22537 0.93354 0.98815 0.86446 1.22165 0.95592 1.10259 0.99500 1.25166 0.89531 0.98254 0.92233 1.20685 0.88823 1.01956 1.01477 1.84737 1.18663 1.59495 1.33499 1.74138 1.18081 1.22819 1.00698 0.87806 0.86153 0.86824 0.89310 0.88430 0.92608 0.96143 0.92117 0.87729 0.86495 0.78900 0.87989 0.87080 0.86861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 14.32 67.78 0.97 -2.38 16 2 C -0.19 -4.79 9.74 25.65 0.25 -4.54 16 3 C 0.13 3.94 5.65 85.63 0.48 4.43 16 4 N -0.59 -24.71 2.44 -830.51 -2.03 -26.73 16 5 C 0.23 11.37 4.23 85.63 0.36 11.73 16 6 C -0.54 -32.34 9.94 25.60 0.25 -32.09 16 7 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 8 C 0.01 0.81 5.47 84.65 0.46 1.27 16 9 N -0.94 -60.12 13.96 21.45 0.30 -59.82 16 10 Si 0.95 44.73 27.47 68.60 1.88 46.61 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 14 C 0.50 22.20 7.75 87.66 0.68 22.88 16 15 O -0.57 -31.21 16.08 15.99 0.26 -30.96 16 16 C 0.06 2.15 4.70 71.24 0.33 2.48 16 17 O -0.28 -10.54 9.74 -71.23 -0.69 -11.24 16 18 C 0.19 5.65 8.01 85.78 0.69 6.33 16 19 C -0.25 -5.66 11.11 22.50 0.25 -5.41 16 20 C 0.01 0.20 7.48 25.00 0.19 0.38 16 21 C -0.07 -0.36 10.45 71.24 0.74 0.38 16 22 O 0.10 2.17 11.19 71.26 0.80 2.97 16 23 N -0.43 -12.17 11.54 -172.61 -1.99 -14.16 16 24 H 0.10 2.16 7.84 -2.91 -0.02 2.13 16 25 H 0.12 2.01 8.06 -2.91 -0.02 1.98 16 26 H 0.11 2.66 7.83 -2.91 -0.02 2.64 16 27 H 0.09 2.86 7.72 -2.39 -0.02 2.84 16 28 H 0.10 2.58 6.44 -2.39 -0.02 2.56 16 29 H 0.06 2.53 7.13 -2.39 -0.02 2.51 16 30 H 0.02 1.09 6.85 -2.38 -0.02 1.08 16 31 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 32 H 0.10 3.25 7.40 -2.38 -0.02 3.23 16 33 H 0.12 3.29 7.77 -2.39 -0.02 3.27 16 34 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 35 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 Total: -1.00 -82.96 327.89 5.21 -77.76 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.02 Total: 10.10 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 5.67 Total: 5.47 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -3.72 Total: -100.71 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: 0.36 Total: -39.23 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.61 kcal Total: -82.96 5.21 -77.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814137612.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.404 kcal (2) G-P(sol) polarization free energy of solvation -82.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds