Wall clock time and date at job start Tue Mar 31 2020 01:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38545 * 120.00979 * 2 1 4 4 C 1.40120 * 117.80927 * 179.97438 * 3 2 1 5 5 C 1.48036 * 121.15038 * 180.02562 * 4 3 2 6 6 O 1.21425 * 120.00408 * 174.03453 * 5 4 3 7 7 O 1.34675 * 119.99728 * 354.02456 * 5 4 3 8 8 C 1.45201 * 116.99851 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47267 * 180.02562 * 8 7 5 10 10 O 1.42901 * 109.46806 * 65.00209 * 9 8 7 11 11 C 1.42904 * 113.99788 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47187 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99769 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99888 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00185 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99875 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46903 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47088 * 120.00291 * 16 14 12 19 19 H 1.48491 * 109.47178 * 240.00330 * 16 14 12 20 20 C 1.39810 * 117.69946 * 0.02562 * 4 3 2 21 21 C 1.50692 * 120.17330 * 180.02562 * 20 4 3 22 22 N 1.31888 * 119.64581 * 0.27507 * 20 4 3 23 23 N 1.28283 * 122.33616 * 359.41843 * 22 20 4 24 24 H 1.08994 * 109.47596 * 89.99671 * 1 2 3 25 25 H 1.09007 * 109.47317 * 210.00022 * 1 2 3 26 26 H 1.09005 * 109.47582 * 329.99517 * 1 2 3 27 27 H 1.08001 * 121.09563 * 359.96493 * 3 2 1 28 28 H 1.09000 * 109.47294 * 300.00403 * 8 7 5 29 29 H 1.09003 * 109.47131 * 60.00296 * 8 7 5 30 30 H 1.09003 * 109.47350 * 185.00060 * 9 8 7 31 31 H 1.09001 * 109.47236 * 305.00025 * 9 8 7 32 32 H 1.09006 * 109.47048 * 299.99857 * 11 10 9 33 33 H 1.09006 * 109.47480 * 59.99780 * 11 10 9 34 34 H 0.97006 * 119.99634 * 179.97438 * 15 14 12 35 35 H 1.08999 * 109.47320 * 83.42273 * 21 20 4 36 36 H 1.09008 * 109.46792 * 203.42215 * 21 20 4 37 37 H 1.08996 * 109.47631 * 323.41574 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1997 0.0000 4 6 3.6001 1.1459 0.0006 5 6 4.4139 2.3825 0.0012 6 8 5.6213 2.3147 0.1109 7 8 3.8152 3.5827 -0.1202 8 6 4.6755 4.7523 -0.1123 9 6 3.8224 6.0139 -0.2588 10 8 2.9811 6.1557 0.8875 11 6 2.1381 7.3091 0.8507 12 6 1.2988 7.3580 2.1013 13 1 1.3993 6.5858 2.8497 14 6 0.4033 8.3892 2.2907 15 7 0.2812 9.3297 1.3796 16 14 -0.6367 8.4502 3.8413 17 1 -0.3117 7.2840 4.7014 18 1 -0.3494 9.7055 4.5809 19 1 -2.0750 8.4098 3.4746 20 6 4.2020 -0.1160 0.0005 21 6 5.7039 -0.2388 0.0017 22 7 3.4482 -1.1983 -0.0055 23 7 2.1666 -1.1419 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 1.6781 2.1453 -0.0006 28 1 5.2249 4.7929 0.8282 29 1 5.3797 4.6911 -0.9421 30 1 4.4728 6.8847 -0.3421 31 1 3.2061 5.9339 -1.1543 32 1 2.7533 8.2069 0.7902 33 1 1.4868 7.2555 -0.0217 34 1 -0.3491 10.0550 1.5127 35 1 6.0748 -0.1515 1.0229 36 1 5.9894 -1.2082 -0.4070 37 1 6.1338 0.5542 -0.6101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815240101.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:19 Heat of formation + Delta-G solvation = -81.398639 kcal Electronic energy + Delta-G solvation = -21075.429789 eV Core-core repulsion = 17625.711253 eV Total energy + Delta-G solvation = -3449.718536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.63701 -40.21322 -37.31203 -36.31104 -34.67610 -33.91065 -32.84532 -30.62667 -29.83299 -27.10788 -27.03767 -25.60889 -23.43806 -22.53065 -22.19357 -21.22750 -18.28537 -17.73901 -16.86003 -16.72796 -16.39622 -15.92769 -15.77505 -15.27777 -14.78671 -14.54176 -14.27642 -13.74210 -13.67159 -13.51848 -13.08923 -12.86755 -12.82245 -12.60946 -12.35990 -12.05758 -11.55354 -11.29394 -11.02501 -10.95337 -10.84801 -10.77542 -10.58453 -10.50938 -10.14187 -9.87578 -9.73937 -9.19969 -8.97615 -8.30681 -6.19317 -4.21414 -0.04545 0.56176 2.22190 2.35197 3.22983 3.23720 3.30722 3.36664 3.62673 3.94620 4.08214 4.24629 4.35066 4.58143 4.62480 4.79698 5.00187 5.05220 5.17608 5.27785 5.30953 5.31481 5.42719 5.49322 5.51651 5.71820 5.76089 5.80482 5.86188 5.93281 6.02848 6.34348 6.95798 7.30474 7.50150 7.70443 8.03897 8.37206 8.42138 8.91116 9.43891 10.92167 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.017602 B = 0.003794 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.371223 B = 7377.467202 C = 8524.768444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.055 3.945 3 C -0.049 4.049 4 C -0.121 4.121 5 C 0.513 3.487 6 O -0.493 6.493 7 O -0.333 6.333 8 C 0.076 3.924 9 C 0.061 3.939 10 O -0.392 6.392 11 C 0.194 3.806 12 C -0.516 4.516 13 H 0.067 0.933 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.907 3.093 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.120 3.880 21 C -0.107 4.107 22 N -0.244 5.244 23 N -0.219 5.219 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.172 0.828 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.007 0.993 33 H 0.008 0.992 34 H 0.264 0.736 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.690 -15.617 -5.738 17.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.089 4.089 3 C -0.078 4.078 4 C -0.133 4.133 5 C 0.356 3.644 6 O -0.382 6.382 7 O -0.248 6.248 8 C 0.002 3.998 9 C -0.017 4.017 10 O -0.312 6.312 11 C 0.120 3.880 12 C -0.554 4.554 13 H 0.085 0.915 14 C -0.144 4.144 15 N -0.537 5.537 16 Si 0.735 3.265 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.025 4.025 21 C -0.164 4.164 22 N -0.087 5.087 23 N -0.063 5.063 24 H 0.105 0.895 25 H 0.103 0.897 26 H 0.106 0.894 27 H 0.189 0.811 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.024 0.976 33 H 0.025 0.975 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.890 -17.195 -5.592 19.017 hybrid contribution -0.441 2.126 0.529 2.235 sum 5.449 -15.069 -5.064 16.805 Atomic orbital electron populations 1.20738 0.86520 1.04703 1.04041 1.22970 0.99650 0.89634 0.96672 1.22902 0.93137 1.01398 0.90329 1.20248 0.94302 0.92730 1.06050 1.20666 0.86129 0.84031 0.73587 1.90793 1.14816 1.87474 1.45131 1.86619 1.41652 1.14322 1.82241 1.23343 0.92108 0.81101 1.03204 1.22338 0.94112 0.93532 0.91727 1.87917 1.55022 1.49315 1.38906 1.20256 0.88106 0.81845 0.97777 1.21071 1.20603 1.09582 1.04189 0.91471 1.24945 0.97029 0.95092 0.97344 1.69966 1.36672 1.12665 1.34379 0.86286 0.79704 0.78158 0.82393 1.19464 1.20783 1.20754 1.23124 0.99771 0.88229 0.91329 1.20990 0.86320 1.04404 1.04731 1.73110 0.98981 1.25737 1.10825 1.72763 1.01754 1.25183 1.06572 0.89506 0.89689 0.89449 0.81068 0.90049 0.89989 0.91612 0.93073 0.97552 0.97450 0.92616 0.89189 0.90257 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.19 36.00 0.37 -0.43 16 2 C 0.06 0.62 6.86 -82.46 -0.57 0.05 16 3 C -0.05 -0.56 9.46 -38.76 -0.37 -0.93 16 4 C -0.12 -1.55 5.92 -104.59 -0.62 -2.17 16 5 C 0.51 7.16 7.86 34.75 0.27 7.44 16 6 O -0.49 -7.17 13.32 -19.21 -0.26 -7.42 16 7 O -0.33 -5.03 9.61 -43.21 -0.42 -5.45 16 8 C 0.08 1.08 5.85 37.16 0.22 1.30 16 9 C 0.06 1.02 6.33 37.16 0.24 1.25 16 10 O -0.39 -8.96 10.30 -38.80 -0.40 -9.36 16 11 C 0.19 5.10 5.69 36.00 0.20 5.30 16 12 C -0.52 -14.74 9.43 -34.44 -0.32 -15.06 16 13 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.09 13.29 55.43 0.74 -25.36 16 16 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.12 1.50 6.91 -81.98 -0.57 0.94 16 21 C -0.11 -1.10 8.96 36.00 0.32 -0.78 16 22 N -0.24 -3.34 11.42 33.82 0.39 -2.95 16 23 N -0.22 -2.91 11.40 33.57 0.38 -2.53 16 24 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 0.60 8.09 -51.93 -0.42 0.18 16 27 H 0.17 1.81 7.78 -52.49 -0.41 1.40 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 37 H 0.10 1.09 5.95 -51.93 -0.31 0.78 16 LS Contribution 328.49 15.07 4.95 4.95 Total: -1.00 -32.43 328.49 -5.47 -37.89 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -4.91 Total: -4.41 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.92 Total: -1.59 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 1.51 Total: -30.84 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -1.07 Total: -22.23 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.43 -5.47 -37.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815240101.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.504 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds