Wall clock time and date at job start Tue Mar 31 2020 01:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38545 * 120.00979 * 2 1 4 4 C 1.40120 * 117.80927 * 179.97438 * 3 2 1 5 5 C 1.48036 * 121.15038 * 180.02562 * 4 3 2 6 6 O 1.21425 * 120.00408 * 174.03453 * 5 4 3 7 7 O 1.34675 * 119.99728 * 354.02456 * 5 4 3 8 8 C 1.45201 * 116.99851 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47267 * 180.02562 * 8 7 5 10 10 O 1.42901 * 109.46806 * 65.00209 * 9 8 7 11 11 C 1.42904 * 113.99788 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47187 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99769 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99888 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00185 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99875 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46903 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47088 * 120.00291 * 16 14 12 19 19 H 1.48491 * 109.47178 * 240.00330 * 16 14 12 20 20 C 1.39810 * 117.69946 * 0.02562 * 4 3 2 21 21 C 1.50692 * 120.17330 * 180.02562 * 20 4 3 22 22 N 1.31888 * 119.64581 * 0.27507 * 20 4 3 23 23 N 1.28283 * 122.33616 * 359.41843 * 22 20 4 24 24 H 1.08994 * 109.47596 * 89.99671 * 1 2 3 25 25 H 1.09007 * 109.47317 * 210.00022 * 1 2 3 26 26 H 1.09005 * 109.47582 * 329.99517 * 1 2 3 27 27 H 1.08001 * 121.09563 * 359.96493 * 3 2 1 28 28 H 1.09000 * 109.47294 * 300.00403 * 8 7 5 29 29 H 1.09003 * 109.47131 * 60.00296 * 8 7 5 30 30 H 1.09003 * 109.47350 * 185.00060 * 9 8 7 31 31 H 1.09001 * 109.47236 * 305.00025 * 9 8 7 32 32 H 1.09006 * 109.47048 * 299.99857 * 11 10 9 33 33 H 1.09006 * 109.47480 * 59.99780 * 11 10 9 34 34 H 0.97006 * 119.99634 * 179.97438 * 15 14 12 35 35 H 1.08999 * 109.47320 * 83.42273 * 21 20 4 36 36 H 1.09008 * 109.46792 * 203.42215 * 21 20 4 37 37 H 1.08996 * 109.47631 * 323.41574 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1997 0.0000 4 6 3.6001 1.1459 0.0006 5 6 4.4139 2.3825 0.0012 6 8 5.6213 2.3147 0.1109 7 8 3.8152 3.5827 -0.1202 8 6 4.6755 4.7523 -0.1123 9 6 3.8224 6.0139 -0.2588 10 8 2.9811 6.1557 0.8875 11 6 2.1381 7.3091 0.8507 12 6 1.2988 7.3580 2.1013 13 1 1.3993 6.5858 2.8497 14 6 0.4033 8.3892 2.2907 15 7 0.2812 9.3297 1.3796 16 14 -0.6367 8.4502 3.8413 17 1 -0.3117 7.2840 4.7014 18 1 -0.3494 9.7055 4.5809 19 1 -2.0750 8.4098 3.4746 20 6 4.2020 -0.1160 0.0005 21 6 5.7039 -0.2388 0.0017 22 7 3.4482 -1.1983 -0.0055 23 7 2.1666 -1.1419 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 1.6781 2.1453 -0.0006 28 1 5.2249 4.7929 0.8282 29 1 5.3797 4.6911 -0.9421 30 1 4.4728 6.8847 -0.3421 31 1 3.2061 5.9339 -1.1543 32 1 2.7533 8.2069 0.7902 33 1 1.4868 7.2555 -0.0217 34 1 -0.3491 10.0550 1.5127 35 1 6.0748 -0.1515 1.0229 36 1 5.9894 -1.2082 -0.4070 37 1 6.1338 0.5542 -0.6101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815240101.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:55:18 Heat of formation + Delta-G solvation = -102.000854 kcal Electronic energy + Delta-G solvation = -21076.323168 eV Core-core repulsion = 17625.711253 eV Total energy + Delta-G solvation = -3450.611915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.61110 -41.30359 -38.80725 -37.67841 -35.56266 -34.98453 -34.83502 -31.85394 -30.85029 -29.03945 -27.94069 -26.59173 -24.64218 -24.35598 -23.42218 -22.30226 -19.31612 -18.85058 -18.56807 -18.04370 -17.74057 -17.21439 -16.83771 -16.57384 -16.30560 -16.20372 -15.53380 -15.00980 -14.60538 -14.39896 -14.33414 -14.15874 -13.75954 -13.61283 -13.35510 -13.26636 -13.09807 -12.89762 -12.72239 -12.47081 -12.21353 -11.99866 -11.87286 -11.77640 -11.50725 -11.26403 -10.91769 -10.83598 -10.62694 -10.27068 -8.32377 -6.44139 -1.03040 -0.34797 1.16191 1.27092 1.41547 1.41944 1.56498 2.27878 2.34442 2.75455 3.00789 3.02196 3.06028 3.15989 3.39217 3.65178 3.88947 3.97459 4.10149 4.15646 4.38814 4.41889 4.51540 4.60556 4.64919 4.71473 4.73806 4.78426 4.86413 5.00683 5.04620 5.18608 5.23607 5.32524 5.54875 5.95477 6.39414 6.50715 6.79924 7.27781 7.42439 8.79835 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.017602 B = 0.003794 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.371223 B = 7377.467202 C = 8524.768444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.059 3.941 3 C -0.046 4.046 4 C -0.134 4.134 5 C 0.516 3.484 6 O -0.500 6.500 7 O -0.346 6.346 8 C 0.079 3.921 9 C 0.052 3.948 10 O -0.409 6.409 11 C 0.208 3.792 12 C -0.548 4.548 13 H 0.060 0.940 14 C 0.010 3.990 15 N -0.929 5.929 16 Si 0.979 3.021 17 H -0.266 1.266 18 H -0.273 1.273 19 H -0.271 1.271 20 C 0.115 3.885 21 C -0.103 4.103 22 N -0.263 5.263 23 N -0.240 5.240 24 H 0.103 0.897 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.181 0.819 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.059 0.941 32 H -0.009 1.009 33 H -0.008 1.008 34 H 0.271 0.729 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.185 -15.932 -5.370 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.086 4.086 3 C -0.075 4.075 4 C -0.145 4.145 5 C 0.360 3.640 6 O -0.390 6.390 7 O -0.262 6.262 8 C 0.007 3.993 9 C -0.025 4.025 10 O -0.329 6.329 11 C 0.133 3.867 12 C -0.586 4.586 13 H 0.078 0.922 14 C -0.189 4.189 15 N -0.568 5.568 16 Si 0.802 3.198 17 H -0.190 1.190 18 H -0.198 1.198 19 H -0.196 1.196 20 C -0.029 4.029 21 C -0.160 4.160 22 N -0.105 5.105 23 N -0.083 5.083 24 H 0.121 0.879 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.199 0.801 28 H 0.096 0.904 29 H 0.134 0.866 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.009 0.991 33 H 0.010 0.990 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.405 -17.532 -5.239 19.080 hybrid contribution -0.251 2.212 0.341 2.252 sum 5.154 -15.320 -4.898 16.890 Atomic orbital electron populations 1.20879 0.84089 1.05583 1.05338 1.23434 1.01125 0.88806 0.95282 1.23094 0.92822 1.02041 0.89537 1.20285 0.94840 0.92358 1.07066 1.20764 0.86124 0.83896 0.73188 1.90786 1.15112 1.87518 1.45560 1.86599 1.42271 1.14847 1.82512 1.23350 0.91654 0.79845 1.04497 1.22673 0.94011 0.95778 0.90018 1.87859 1.55462 1.47773 1.41815 1.19869 0.87922 0.82470 0.96410 1.21406 1.21987 1.10105 1.05101 0.92165 1.25886 0.97951 0.94311 1.00749 1.70059 1.37300 1.13184 1.36255 0.85193 0.78056 0.78449 0.78067 1.18970 1.19850 1.19565 1.23382 1.00638 0.87901 0.91015 1.21007 0.84971 1.05088 1.04957 1.73063 0.99416 1.26315 1.11681 1.72711 1.01830 1.26279 1.07435 0.87855 0.89060 0.88277 0.80148 0.90392 0.86592 0.89787 0.92297 0.99086 0.99039 0.92023 0.88797 0.88823 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 10.19 71.24 0.73 -0.66 16 2 C 0.06 1.25 6.86 42.62 0.29 1.54 16 3 C -0.05 -1.02 9.46 22.80 0.22 -0.80 16 4 C -0.13 -3.34 5.92 -19.84 -0.12 -3.45 16 5 C 0.52 13.97 7.86 70.42 0.55 14.52 16 6 O -0.50 -14.01 13.32 20.08 0.27 -13.74 16 7 O -0.35 -10.11 9.61 -53.18 -0.51 -10.63 16 8 C 0.08 2.15 5.85 71.98 0.42 2.57 16 9 C 0.05 1.70 6.33 71.98 0.46 2.15 16 10 O -0.41 -18.76 10.30 -145.57 -1.50 -20.26 16 11 C 0.21 11.09 5.69 71.24 0.41 11.50 16 12 C -0.55 -31.54 9.43 25.60 0.24 -31.30 16 13 H 0.06 3.46 7.81 -2.91 -0.02 3.43 16 14 C 0.01 0.55 5.46 84.66 0.46 1.01 16 15 N -0.93 -53.94 13.29 21.45 0.28 -53.66 16 16 Si 0.98 42.97 29.54 68.60 2.03 44.99 16 17 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 19 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 20 C 0.12 2.84 6.91 42.93 0.30 3.13 16 21 C -0.10 -2.03 8.96 71.23 0.64 -1.39 16 22 N -0.26 -7.08 11.42 -46.92 -0.54 -7.61 16 23 N -0.24 -6.21 11.40 -47.69 -0.54 -6.75 16 24 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.10 1.15 8.09 -2.38 -0.02 1.13 16 27 H 0.18 3.62 7.78 -2.91 -0.02 3.60 16 28 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 33 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 34 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.10 2.02 5.95 -2.39 -0.01 2.01 16 Total: -1.00 -68.82 328.49 5.16 -63.66 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 1.08 Total: 5.17 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 4.59 Total: -1.18 kcal Atomic # 7 Polarization: -67.22 SS G_CDS: -0.79 Total: -68.02 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -1.74 Total: -44.62 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -68.82 5.16 -63.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815240101.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.337 kcal (2) G-P(sol) polarization free energy of solvation -68.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds