Wall clock time and date at job start Tue Mar 31 2020 01:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99726 * 2 1 4 4 H 1.48509 * 109.46865 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47403 * 299.99845 * 3 2 1 6 6 H 1.48501 * 109.47445 * 59.99929 * 3 2 1 7 7 C 1.37868 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00637 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99934 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.46934 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99608 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47150 * 180.02562 * 11 10 9 13 13 O 1.45194 * 109.47448 * 64.99121 * 12 11 10 14 14 C 1.34231 * 117.00176 * 180.02562 * 13 12 11 15 15 O 1.20819 * 119.99794 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00122 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.46967 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.46965 * 179.97438 * 17 16 14 19 19 C 1.38386 * 120.00005 * 124.99984 * 18 17 16 20 20 N 1.32124 * 119.99712 * 180.02562 * 19 18 17 21 21 C 1.32158 * 120.00097 * 359.97438 * 20 19 18 22 22 C 1.38336 * 120.00075 * 0.26620 * 21 20 19 23 23 N 1.32127 * 120.00100 * 305.02162 * 18 17 16 24 24 H 0.97002 * 119.99938 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47355 * 59.99372 * 9 7 2 26 26 H 1.09000 * 109.46748 * 299.99748 * 9 7 2 27 27 H 1.08996 * 109.47527 * 59.99314 * 11 10 9 28 28 H 1.09003 * 109.47008 * 299.99161 * 11 10 9 29 29 H 1.09004 * 109.46639 * 304.99390 * 12 11 10 30 30 H 1.08998 * 109.47325 * 184.99938 * 12 11 10 31 31 H 1.09000 * 109.47243 * 60.00065 * 16 14 13 32 32 H 1.08999 * 109.47190 * 300.00096 * 16 14 13 33 33 H 1.09000 * 109.47206 * 59.99895 * 17 16 14 34 34 H 1.08999 * 109.47125 * 299.99990 * 17 16 14 35 35 H 1.08005 * 120.00186 * 0.03930 * 19 18 17 36 36 H 1.08002 * 119.99718 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.00403 * 179.72028 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6481 -5.9562 0.0006 13 8 3.3986 -5.8886 1.2417 14 6 4.3932 -6.7757 1.4015 15 8 4.6292 -7.5817 0.5329 16 6 5.2155 -6.7665 2.6643 17 6 6.2740 -7.8689 2.5917 18 6 7.0968 -7.8592 3.8543 19 6 7.2180 -9.0121 4.6101 20 7 7.9390 -9.0034 5.7173 21 6 8.5447 -7.8939 6.1027 22 6 8.4194 -6.7401 5.3499 23 7 7.7020 -6.7498 4.2400 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5566 0.8903 27 1 0.9452 -4.9822 -0.8902 28 1 0.9448 -4.9827 0.8898 29 1 3.3222 -5.7955 -0.8408 30 1 2.1822 -6.9374 -0.0893 31 1 4.5662 -6.9417 3.5221 32 1 5.7059 -5.7989 2.7715 33 1 6.9233 -7.6933 1.7340 34 1 5.7840 -8.8366 2.4843 35 1 6.7236 -9.9191 4.2947 36 1 9.1336 -7.8868 7.0080 37 1 8.9106 -5.8322 5.6673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815242444.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:48 Heat of formation + Delta-G solvation = -96.468521 kcal Electronic energy + Delta-G solvation = -20286.390479 eV Core-core repulsion = 16836.018465 eV Total energy + Delta-G solvation = -3450.372015 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47451 -40.32837 -37.18695 -36.13985 -35.24201 -33.87239 -32.77661 -31.09780 -29.96118 -27.03540 -26.28190 -24.90092 -23.10903 -22.39917 -21.93089 -20.57126 -18.03073 -17.78661 -17.27342 -16.70956 -16.63528 -16.29050 -15.81397 -15.49928 -15.18624 -14.68356 -14.37594 -14.05597 -14.00806 -13.47508 -12.86846 -12.79182 -12.74401 -12.25894 -11.94023 -11.91136 -11.67067 -11.43526 -11.36327 -10.92547 -10.88015 -10.74435 -10.42320 -10.36772 -10.05001 -9.61291 -9.42384 -9.11935 -8.88631 -8.22069 -6.12549 -4.14113 0.37385 0.75718 2.26475 2.74172 3.28863 3.32059 3.35309 3.42161 3.65220 3.89267 4.08370 4.32244 4.37196 4.56426 4.68966 4.74414 4.82188 4.98613 5.05708 5.10148 5.22472 5.24192 5.30866 5.45824 5.62537 5.70713 5.86056 5.92540 5.98361 6.09038 6.60682 6.89078 7.04707 7.39092 7.40141 7.77877 7.83417 8.11966 8.51806 8.98943 9.50799 10.99079 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.002812 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.115033 B = 9955.469855 C =11154.900744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.074 3.926 13 O -0.340 6.340 14 C 0.463 3.537 15 O -0.520 6.520 16 C -0.108 4.108 17 C -0.055 4.055 18 C 0.085 3.915 19 C 0.054 3.946 20 N -0.437 5.437 21 C 0.040 3.960 22 C 0.058 3.942 23 N -0.433 5.433 24 H 0.264 0.736 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.171 0.829 36 H 0.170 0.830 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.100 -17.845 9.882 24.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.001 3.999 13 O -0.256 6.256 14 C 0.307 3.693 15 O -0.409 6.409 16 C -0.146 4.146 17 C -0.093 4.093 18 C -0.056 4.056 19 C -0.106 4.106 20 N -0.152 5.152 21 C -0.119 4.119 22 C -0.102 4.102 23 N -0.149 5.149 24 H 0.073 0.927 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.136 0.864 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.188 0.812 36 H 0.187 0.813 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 13.185 -17.915 9.606 24.229 hybrid contribution 0.000 0.877 -0.061 0.879 sum 13.185 -17.038 9.545 23.564 Atomic orbital electron populations 1.69972 1.06108 1.27090 1.50664 1.24953 0.94997 0.99483 0.95127 0.86272 0.80056 0.82503 0.77621 1.19433 1.20837 1.20815 1.21090 0.94151 0.89277 1.50676 0.91438 1.20247 0.88757 0.83530 0.95508 1.87921 1.35305 1.12607 1.95221 1.22326 0.93284 0.85508 1.00546 1.23218 0.93702 0.98745 0.84269 1.86603 1.43410 1.54049 1.41516 1.23559 0.79072 0.77868 0.88835 1.90641 1.68007 1.38459 1.43821 1.21256 0.96503 1.02700 0.94117 1.20324 0.95589 0.99980 0.93408 1.22238 0.95778 0.90271 0.97278 1.23667 0.96529 0.99214 0.91189 1.68466 1.05052 1.28253 1.13385 1.23794 0.97850 0.89519 1.00757 1.23845 0.95600 0.99803 0.91001 1.68303 1.05159 1.27720 1.13701 0.92688 0.97602 0.97484 0.91946 0.93221 0.90458 0.90421 0.87775 0.86370 0.88350 0.88701 0.81230 0.81313 0.81098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.51 -15.21 9.43 -34.44 -0.32 -15.54 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.32 5.69 36.01 0.20 5.52 16 10 O -0.39 -9.51 10.30 -38.80 -0.40 -9.91 16 11 C 0.06 1.11 6.33 37.16 0.24 1.35 16 12 C 0.07 1.17 5.84 37.16 0.22 1.39 16 13 O -0.34 -5.59 10.19 -42.03 -0.43 -6.02 16 14 C 0.46 6.45 7.96 36.00 0.29 6.74 16 15 O -0.52 -8.03 15.73 -18.75 -0.29 -8.33 16 16 C -0.11 -1.11 5.67 -27.88 -0.16 -1.27 16 17 C -0.05 -0.48 4.92 -27.88 -0.14 -0.61 16 18 C 0.08 0.76 6.18 -82.41 -0.51 0.25 16 19 C 0.05 0.44 10.85 -17.37 -0.19 0.25 16 20 N -0.44 -3.92 10.50 -13.06 -0.14 -4.06 16 21 C 0.04 0.28 11.22 -17.38 -0.20 0.09 16 22 C 0.06 0.43 11.22 -17.38 -0.20 0.23 16 23 N -0.43 -4.29 10.05 -9.29 -0.09 -4.38 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.25 8.13 -51.93 -0.42 0.82 16 30 H 0.08 1.01 8.13 -51.93 -0.42 0.58 16 31 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.12 1.29 7.96 -51.93 -0.41 0.88 16 33 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 34 H 0.09 0.68 7.85 -51.93 -0.41 0.27 16 35 H 0.17 0.92 7.96 -52.48 -0.42 0.50 16 36 H 0.17 0.64 8.06 -52.49 -0.42 0.21 16 37 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 LS Contribution 332.77 15.07 5.01 5.01 Total: -1.00 -35.29 332.77 -6.49 -41.78 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -5.01 Total: -4.72 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.86 Total: -0.10 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.51 Total: -34.58 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -1.12 Total: -24.26 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.29 -6.49 -41.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815242444.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.689 kcal (2) G-P(sol) polarization free energy of solvation -35.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds