Wall clock time and date at job start Tue Mar 31 2020 01:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99726 * 2 1 4 4 H 1.48509 * 109.46865 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47403 * 299.99845 * 3 2 1 6 6 H 1.48501 * 109.47445 * 59.99929 * 3 2 1 7 7 C 1.37868 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00637 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99934 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.46934 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99608 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47150 * 180.02562 * 11 10 9 13 13 O 1.45194 * 109.47448 * 64.99121 * 12 11 10 14 14 C 1.34231 * 117.00176 * 180.02562 * 13 12 11 15 15 O 1.20819 * 119.99794 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00122 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.46967 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.46965 * 179.97438 * 17 16 14 19 19 C 1.38386 * 120.00005 * 124.99984 * 18 17 16 20 20 N 1.32124 * 119.99712 * 180.02562 * 19 18 17 21 21 C 1.32158 * 120.00097 * 359.97438 * 20 19 18 22 22 C 1.38336 * 120.00075 * 0.26620 * 21 20 19 23 23 N 1.32127 * 120.00100 * 305.02162 * 18 17 16 24 24 H 0.97002 * 119.99938 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47355 * 59.99372 * 9 7 2 26 26 H 1.09000 * 109.46748 * 299.99748 * 9 7 2 27 27 H 1.08996 * 109.47527 * 59.99314 * 11 10 9 28 28 H 1.09003 * 109.47008 * 299.99161 * 11 10 9 29 29 H 1.09004 * 109.46639 * 304.99390 * 12 11 10 30 30 H 1.08998 * 109.47325 * 184.99938 * 12 11 10 31 31 H 1.09000 * 109.47243 * 60.00065 * 16 14 13 32 32 H 1.08999 * 109.47190 * 300.00096 * 16 14 13 33 33 H 1.09000 * 109.47206 * 59.99895 * 17 16 14 34 34 H 1.08999 * 109.47125 * 299.99990 * 17 16 14 35 35 H 1.08005 * 120.00186 * 0.03930 * 19 18 17 36 36 H 1.08002 * 119.99718 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.00403 * 179.72028 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6481 -5.9562 0.0006 13 8 3.3986 -5.8886 1.2417 14 6 4.3932 -6.7757 1.4015 15 8 4.6292 -7.5817 0.5329 16 6 5.2155 -6.7665 2.6643 17 6 6.2740 -7.8689 2.5917 18 6 7.0968 -7.8592 3.8543 19 6 7.2180 -9.0121 4.6101 20 7 7.9390 -9.0034 5.7173 21 6 8.5447 -7.8939 6.1027 22 6 8.4194 -6.7401 5.3499 23 7 7.7020 -6.7498 4.2400 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5566 0.8903 27 1 0.9452 -4.9822 -0.8902 28 1 0.9448 -4.9827 0.8898 29 1 3.3222 -5.7955 -0.8408 30 1 2.1822 -6.9374 -0.0893 31 1 4.5662 -6.9417 3.5221 32 1 5.7059 -5.7989 2.7715 33 1 6.9233 -7.6933 1.7340 34 1 5.7840 -8.8366 2.4843 35 1 6.7236 -9.9191 4.2947 36 1 9.1336 -7.8868 7.0080 37 1 8.9106 -5.8322 5.6673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815242444.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:47 Heat of formation + Delta-G solvation = -120.378299 kcal Electronic energy + Delta-G solvation = -20287.427285 eV Core-core repulsion = 16836.018465 eV Total energy + Delta-G solvation = -3451.408820 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.08740 -41.46797 -38.79902 -37.55086 -35.96261 -34.95488 -34.53502 -32.06301 -31.23134 -29.05454 -27.12679 -25.50465 -24.59700 -24.02534 -23.08897 -21.60942 -18.96376 -18.70602 -18.55374 -17.97941 -17.83097 -17.50836 -17.13972 -16.57198 -16.42784 -16.20720 -15.85745 -15.18626 -15.09903 -14.51551 -14.13867 -13.99307 -13.77915 -13.45477 -13.24494 -13.03642 -12.89986 -12.72056 -12.57237 -12.44805 -12.38074 -12.05936 -12.01057 -11.71200 -11.54806 -11.27138 -10.90651 -10.28108 -10.18673 -10.01679 -8.33257 -6.45359 -0.18921 0.15715 1.15545 1.40293 1.41487 1.56374 1.67177 2.34298 2.73398 3.00710 3.06101 3.08276 3.38226 3.50045 3.59970 3.88080 3.93548 4.03811 4.04706 4.11611 4.34642 4.42287 4.43979 4.52024 4.56374 4.62263 4.69824 4.84725 4.89942 4.99100 5.16676 5.41998 5.48233 5.53927 5.94318 6.32453 6.49103 6.69575 6.79241 6.82831 7.26394 8.79186 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.002812 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.115033 B = 9955.469855 C =11154.900744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.983 3.017 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.207 3.793 10 O -0.410 6.410 11 C 0.052 3.948 12 C 0.078 3.922 13 O -0.362 6.362 14 C 0.464 3.536 15 O -0.536 6.536 16 C -0.099 4.099 17 C -0.047 4.047 18 C 0.073 3.927 19 C 0.052 3.948 20 N -0.461 5.461 21 C 0.044 3.956 22 C 0.051 3.949 23 N -0.464 5.464 24 H 0.271 0.729 25 H -0.007 1.007 26 H -0.010 1.010 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.192 0.808 36 H 0.201 0.799 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.085 -17.915 10.751 25.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.025 4.025 12 C 0.004 3.996 13 O -0.278 6.278 14 C 0.309 3.691 15 O -0.426 6.426 16 C -0.137 4.137 17 C -0.085 4.085 18 C -0.067 4.067 19 C -0.107 4.107 20 N -0.176 5.176 21 C -0.115 4.115 22 C -0.109 4.109 23 N -0.180 5.180 24 H 0.080 0.920 25 H 0.010 0.990 26 H 0.007 0.993 27 H 0.100 0.900 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.129 0.871 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.129 0.871 35 H 0.209 0.791 36 H 0.217 0.783 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 14.164 -18.018 10.470 25.197 hybrid contribution -0.296 0.817 -0.289 0.916 sum 13.868 -17.202 10.181 24.328 Atomic orbital electron populations 1.70065 1.07668 1.28644 1.50483 1.25946 0.95997 1.03345 0.93890 0.85138 0.78612 0.77319 0.78350 1.18976 1.19561 1.19550 1.21411 0.94062 0.90947 1.52284 0.92245 1.19879 0.88568 0.84406 0.93895 1.87864 1.35550 1.14250 1.95329 1.22669 0.94626 0.83374 1.01808 1.23186 0.93129 0.99154 0.84086 1.86599 1.44350 1.55189 1.41682 1.24183 0.78417 0.76925 0.89607 1.90627 1.68296 1.39019 1.44651 1.21310 0.96543 1.03063 0.92801 1.20262 0.94963 1.00076 0.93196 1.22210 0.96381 0.90605 0.97503 1.23980 0.96266 0.99696 0.90808 1.68525 1.05891 1.29243 1.13918 1.24322 0.97063 0.88776 1.01361 1.24316 0.95154 1.01079 0.90314 1.68269 1.06137 1.28557 1.15009 0.91973 0.98970 0.99258 0.90035 0.92562 0.91112 0.87103 0.86000 0.87057 0.89476 0.87080 0.79117 0.78256 0.78595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.71 13.29 21.44 0.28 -55.43 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.98 44.52 29.54 68.60 2.03 46.55 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 7 C -0.55 -33.07 9.43 25.60 0.24 -32.83 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.55 16 9 C 0.21 11.68 5.69 71.24 0.41 12.09 16 10 O -0.41 -20.31 10.30 -145.57 -1.50 -21.81 16 11 C 0.05 1.89 6.33 71.98 0.46 2.34 16 12 C 0.08 2.39 5.84 71.98 0.42 2.81 16 13 O -0.36 -11.77 10.19 -48.78 -0.50 -12.27 16 14 C 0.46 12.66 7.96 71.23 0.57 13.23 16 15 O -0.54 -16.16 15.73 21.98 0.35 -15.82 16 16 C -0.10 -1.99 5.67 29.85 0.17 -1.82 16 17 C -0.05 -0.78 4.92 29.85 0.15 -0.63 16 18 C 0.07 1.24 6.18 42.55 0.26 1.50 16 19 C 0.05 0.77 10.85 84.68 0.92 1.69 16 20 N -0.46 -7.57 10.50 -195.22 -2.05 -9.62 16 21 C 0.04 0.54 11.22 84.67 0.95 1.49 16 22 C 0.05 0.69 11.22 84.67 0.95 1.64 16 23 N -0.46 -8.81 10.05 -183.29 -1.84 -10.65 16 24 H 0.27 15.00 8.31 -92.71 -0.77 14.22 16 25 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 26 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 2.26 8.13 -2.38 -0.02 2.24 16 30 H 0.11 2.67 8.13 -2.39 -0.02 2.65 16 31 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.11 2.42 7.96 -2.39 -0.02 2.40 16 33 H 0.09 1.64 8.10 -2.39 -0.02 1.62 16 34 H 0.11 1.44 7.85 -2.39 -0.02 1.42 16 35 H 0.19 1.75 7.96 -2.91 -0.02 1.73 16 36 H 0.20 0.96 8.06 -2.91 -0.02 0.94 16 37 H 0.20 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -75.85 332.77 3.78 -72.07 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: 1.06 Total: 4.60 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 5.95 Total: 2.36 kcal Atomic # 7 Polarization: -72.09 SS G_CDS: -3.61 Total: -75.70 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -1.65 Total: -49.89 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -75.85 3.78 -72.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815242444.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.309 kcal (2) G-P(sol) polarization free energy of solvation -75.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds