Wall clock time and date at job start Tue Mar 31 2020 01:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99768 * 2 1 4 4 H 1.48498 * 109.47055 * 270.00001 * 3 2 1 5 5 H 1.48499 * 109.46983 * 29.99890 * 3 2 1 6 6 H 1.48497 * 109.46884 * 149.99739 * 3 2 1 7 7 C 1.37871 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00586 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99886 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.46832 * 179.97438 * 9 7 2 11 11 C 1.42905 * 113.99543 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46907 * 180.02562 * 11 10 9 13 13 O 1.45201 * 109.47294 * 64.99750 * 12 11 10 14 14 C 1.34229 * 117.00517 * 180.02562 * 13 12 11 15 15 O 1.20828 * 119.99602 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00533 * 180.02562 * 14 13 12 17 17 C 1.52995 * 109.47301 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47299 * 179.97438 * 17 16 14 19 19 C 1.38602 * 120.79596 * 90.00262 * 18 17 16 20 20 N 1.32331 * 119.10423 * 179.97438 * 19 18 17 21 21 C 1.31794 * 120.81888 * 359.97438 * 20 19 18 22 22 N 1.31795 * 121.75372 * 0.02562 * 21 20 19 23 23 C 1.32334 * 120.81807 * 0.02562 * 22 21 20 24 24 H 0.97000 * 120.00356 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47023 * 59.99763 * 9 7 2 26 26 H 1.08996 * 109.46904 * 299.99369 * 9 7 2 27 27 H 1.08991 * 109.47301 * 60.00257 * 11 10 9 28 28 H 1.09003 * 109.47057 * 300.00017 * 11 10 9 29 29 H 1.09005 * 109.46960 * 305.00288 * 12 11 10 30 30 H 1.08993 * 109.47070 * 184.99796 * 12 11 10 31 31 H 1.08998 * 109.47033 * 59.99945 * 16 14 13 32 32 H 1.09005 * 109.47292 * 300.00243 * 16 14 13 33 33 H 1.08998 * 109.46952 * 60.00104 * 17 16 14 34 34 H 1.08997 * 109.47566 * 300.00466 * 17 16 14 35 35 H 1.07994 * 120.45169 * 359.95292 * 19 18 17 36 36 H 1.08003 * 119.12654 * 179.71869 * 21 20 19 37 37 H 1.07998 * 120.44737 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6482 -5.9562 0.0017 13 8 3.3995 -5.8879 1.2424 14 6 4.3943 -6.7748 1.4021 15 8 4.6298 -7.5812 0.5337 16 6 5.2173 -6.7649 2.6644 17 6 6.2750 -7.8680 2.5924 18 6 7.0985 -7.8576 3.8544 19 6 6.7241 -8.6164 4.9523 20 7 7.4722 -8.5826 6.0433 21 6 8.5602 -7.8405 6.0933 22 7 8.9468 -7.1065 5.0692 23 6 8.2483 -7.0893 3.9454 24 1 -0.4851 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8903 27 1 0.9449 -4.9827 -0.8886 28 1 0.9454 -4.9822 0.8914 29 1 3.3219 -5.7959 -0.8402 30 1 2.1823 -6.9374 -0.0874 31 1 4.5685 -6.9396 3.5226 32 1 5.7077 -5.7972 2.7708 33 1 6.9239 -7.6936 1.7342 34 1 5.7844 -8.8355 2.4862 35 1 5.8338 -9.2266 4.9179 36 1 9.1481 -7.8299 6.9992 37 1 8.5704 -6.4853 3.1100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815251548.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:09 Heat of formation + Delta-G solvation = -98.056041 kcal Electronic energy + Delta-G solvation = -20279.854950 eV Core-core repulsion = 16829.414095 eV Total energy + Delta-G solvation = -3450.440855 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.41721 -40.40170 -37.24949 -36.20318 -35.13492 -34.06141 -32.80504 -31.12495 -29.95300 -27.03446 -26.07443 -24.97407 -23.11363 -22.42528 -21.96936 -20.65107 -18.03219 -18.00412 -17.80258 -16.72948 -16.68782 -16.23057 -15.54928 -15.11098 -14.76199 -14.63126 -14.40915 -14.11157 -14.03015 -13.89078 -13.51207 -12.97328 -12.75627 -12.44901 -11.95470 -11.60267 -11.47763 -11.23391 -11.19091 -10.97823 -10.87742 -10.80243 -10.50341 -10.42840 -10.08452 -9.78563 -9.58411 -9.16469 -8.91312 -8.24999 -6.14900 -4.16825 0.46566 0.69287 2.18202 2.68577 3.28184 3.33294 3.38605 3.40095 3.78518 3.84903 4.19753 4.27171 4.29745 4.37265 4.53400 4.68080 4.85661 4.87558 5.06712 5.17284 5.21762 5.22333 5.30764 5.40966 5.63461 5.64337 5.81769 5.88633 5.99998 6.04300 6.53652 6.56521 7.01568 7.36107 7.68861 7.74202 7.76318 8.09068 8.48440 8.95564 9.48134 10.96632 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018174 B = 0.002804 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.292766 B = 9982.745726 C =11099.354415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.075 3.925 13 O -0.340 6.340 14 C 0.462 3.538 15 O -0.518 6.518 16 C -0.112 4.112 17 C -0.060 4.060 18 C -0.187 4.187 19 C 0.152 3.848 20 N -0.519 5.519 21 C 0.287 3.713 22 N -0.518 5.518 23 C 0.154 3.846 24 H 0.264 0.736 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.169 0.831 36 H 0.196 0.804 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.862 -17.890 8.018 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.001 3.999 13 O -0.256 6.256 14 C 0.305 3.695 15 O -0.407 6.407 16 C -0.150 4.150 17 C -0.099 4.099 18 C -0.191 4.191 19 C -0.014 4.014 20 N -0.232 5.232 21 C 0.000 4.000 22 N -0.231 5.231 23 C -0.012 4.012 24 H 0.074 0.926 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.186 0.814 36 H 0.212 0.788 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 12.494 -17.941 8.595 23.492 hybrid contribution -0.572 0.840 -0.900 1.357 sum 11.922 -17.101 7.695 22.221 Atomic orbital electron populations 1.69958 1.06114 1.27244 1.50468 1.24952 0.94994 0.99476 0.95077 0.86322 0.79678 0.82161 0.78257 1.20440 1.21041 1.19584 1.21043 0.94091 0.89287 1.50955 0.91512 1.20243 0.88740 0.83483 0.95518 1.87915 1.35343 1.12615 1.95230 1.22329 0.93273 0.85495 1.00592 1.23228 0.93684 0.98793 0.84191 1.86603 1.43371 1.54006 1.41631 1.23533 0.79193 0.77969 0.88793 1.90655 1.68010 1.38323 1.43738 1.21362 0.96925 1.02166 0.94498 1.20273 0.95986 0.99650 0.93963 1.21647 0.98734 1.00205 0.98521 1.23229 0.97234 0.93682 0.87230 1.68455 1.06637 1.20736 1.27391 1.25019 0.90687 0.87519 0.96797 1.68468 1.32859 1.20710 1.01043 1.23271 0.89459 0.93121 0.95360 0.92598 0.97601 0.97477 0.91912 0.93196 0.90441 0.90395 0.87471 0.87170 0.89100 0.89207 0.81404 0.78765 0.81274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.67 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -15.08 9.43 -34.44 -0.32 -15.41 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.19 5.26 5.69 36.01 0.20 5.46 16 10 O -0.39 -9.31 10.30 -38.80 -0.40 -9.71 16 11 C 0.06 1.08 6.33 37.16 0.24 1.31 16 12 C 0.07 1.13 5.85 37.16 0.22 1.34 16 13 O -0.34 -5.28 10.19 -42.02 -0.43 -5.71 16 14 C 0.46 5.89 7.96 36.00 0.29 6.18 16 15 O -0.52 -7.54 15.73 -18.75 -0.29 -7.83 16 16 C -0.11 -0.95 5.79 -27.89 -0.16 -1.11 16 17 C -0.06 -0.42 4.68 -27.89 -0.13 -0.55 16 18 C -0.19 -1.36 5.17 -104.36 -0.54 -1.90 16 19 C 0.15 1.15 11.01 -17.20 -0.19 0.96 16 20 N -0.52 -4.73 10.44 -14.58 -0.15 -4.88 16 21 C 0.29 2.45 12.29 -92.15 -1.13 1.31 16 22 N -0.52 -4.88 10.44 -14.58 -0.15 -5.03 16 23 C 0.15 1.23 11.01 -17.21 -0.19 1.04 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.20 8.13 -51.93 -0.42 0.77 16 30 H 0.08 0.97 8.13 -51.93 -0.42 0.54 16 31 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.09 0.66 8.06 -51.93 -0.42 0.24 16 34 H 0.09 0.60 8.06 -51.93 -0.42 0.18 16 35 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.20 1.08 8.06 -52.48 -0.42 0.65 16 37 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 333.44 15.07 5.02 5.02 Total: -1.00 -34.77 333.44 -7.54 -42.31 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -5.03 Total: -5.06 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.82 Total: 0.16 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.43 Total: -35.82 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -1.12 Total: -23.26 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.77 -7.54 -42.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815251548.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.743 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds