Wall clock time and date at job start Tue Mar 31 2020 02:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47347 * 2 1 4 4 C 1.50698 * 109.47161 * 180.02562 * 3 2 1 5 5 N 1.34623 * 125.89916 * 264.97710 * 4 3 2 6 6 H 0.97006 * 124.80971 * 0.02562 * 5 4 3 7 7 C 1.36432 * 110.38395 * 180.02562 * 5 4 3 8 8 C 1.34435 * 109.08340 * 0.26671 * 7 5 4 9 9 C 1.37842 * 125.89720 * 85.00632 * 4 3 2 10 10 C 1.47116 * 127.02079 * 359.97438 * 9 4 3 11 11 O 1.21545 * 120.00054 * 359.97438 * 10 9 4 12 12 O 1.34784 * 119.99885 * 180.02562 * 10 9 4 13 13 C 1.45198 * 117.00048 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.47172 * 179.97438 * 13 12 10 15 15 O 1.21297 * 119.99946 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00117 * 180.02562 * 14 13 12 17 17 C 1.37103 * 119.99961 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99834 * 359.97438 * 17 16 14 19 19 C 1.38950 * 119.99904 * 180.02562 * 17 16 14 20 20 N 1.31414 * 119.99660 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00027 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47257 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.46894 * 119.99804 * 21 19 17 24 24 H 1.48494 * 109.47274 * 239.99666 * 21 19 17 25 25 H 1.09000 * 109.47546 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46624 * 299.99531 * 1 2 3 27 27 H 1.08996 * 109.47519 * 59.99292 * 1 2 3 28 28 H 1.09005 * 109.46624 * 240.00469 * 2 1 3 29 29 H 1.08996 * 109.47519 * 120.00708 * 2 1 3 30 30 H 1.09005 * 109.46875 * 60.00623 * 3 2 1 31 31 H 1.09000 * 109.47398 * 300.00278 * 3 2 1 32 32 H 1.08002 * 125.45555 * 179.97438 * 7 5 4 33 33 H 1.07995 * 126.81341 * 179.73256 * 8 7 5 34 34 H 1.08999 * 109.47065 * 299.99382 * 13 12 10 35 35 H 1.08994 * 109.47477 * 59.99604 * 13 12 10 36 36 H 0.96993 * 119.99969 * 359.97438 * 16 14 13 37 37 H 0.97009 * 119.99564 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3368 1.5377 1.0854 6 1 4.0167 1.6174 1.9976 7 6 5.6513 1.5063 0.7212 8 6 5.7344 1.3953 -0.6160 9 6 4.3547 1.3453 -1.1134 10 6 3.9220 1.2226 -2.5141 11 8 2.7372 1.1981 -2.7842 12 8 4.8394 1.1364 -3.4977 13 6 4.3403 1.0180 -4.8561 14 6 5.5019 0.9346 -5.8126 15 8 6.6386 0.9719 -5.3909 16 7 5.2777 0.8197 -7.1366 17 6 6.3345 0.7434 -8.0067 18 1 7.3465 0.7757 -7.6312 19 6 6.1033 0.6255 -9.3718 20 7 4.8718 0.5866 -9.8287 21 14 7.5431 0.5222 -10.5574 22 1 8.8166 0.5879 -9.7965 23 1 7.4780 -0.7595 -11.3047 24 1 7.4793 1.6565 -11.5136 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9562 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 6.4906 1.5662 1.3983 33 1 6.6373 1.3495 -1.2066 34 1 3.7327 0.1172 -4.9427 35 1 3.7332 1.8904 -5.0975 36 1 4.3687 0.7903 -7.4738 37 1 4.7104 0.5039 -10.7817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817269949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:49 Heat of formation + Delta-G solvation = -92.672689 kcal Electronic energy + Delta-G solvation = -21069.083527 eV Core-core repulsion = 17618.876112 eV Total energy + Delta-G solvation = -3450.207415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.35848 -39.60113 -37.95076 -35.87361 -34.99840 -33.91015 -31.38648 -31.22227 -30.09970 -28.28466 -26.26598 -24.63596 -23.04637 -21.72513 -20.81279 -19.47445 -19.38976 -17.99814 -17.87302 -16.55289 -16.04264 -16.01482 -15.21990 -15.07705 -14.65688 -14.40690 -14.14566 -13.90217 -13.69631 -13.28096 -13.18218 -12.86429 -12.66591 -12.12674 -12.03671 -11.77121 -11.56382 -11.46323 -11.39691 -11.09983 -10.82808 -10.33964 -10.25893 -10.19120 -10.12689 -9.54462 -8.95873 -8.41814 -8.32281 -8.00660 -6.43411 -3.84943 1.53031 2.34304 2.77055 3.16572 3.23997 3.28853 3.37336 3.45439 3.83657 4.19245 4.49625 4.73498 4.85168 4.89188 4.99173 5.14717 5.22544 5.25504 5.34706 5.43698 5.57019 5.66558 5.67151 5.82509 5.83919 5.89264 6.03830 6.11429 6.15093 6.19799 6.64207 6.77894 6.91355 7.25331 7.54374 7.99989 8.23278 8.57274 9.14515 9.47771 9.98373 10.74137 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028599 B = 0.003276 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.820166 B = 8544.726118 C = 9400.546422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.060 4.060 4 C 0.113 3.887 5 N -0.548 5.548 6 H 0.416 0.584 7 C -0.030 4.030 8 C -0.136 4.136 9 C -0.218 4.218 10 C 0.535 3.465 11 O -0.526 6.526 12 O -0.321 6.321 13 C 0.063 3.937 14 C 0.441 3.559 15 O -0.575 6.575 16 N -0.556 5.556 17 C -0.300 4.300 18 H 0.106 0.894 19 C 0.023 3.977 20 N -0.898 5.898 21 Si 0.932 3.068 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.281 1.281 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.171 0.829 33 H 0.156 0.844 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.395 0.605 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.788 1.116 21.687 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.098 4.098 4 C -0.005 4.005 5 N -0.143 5.143 6 H 0.253 0.747 7 C -0.156 4.156 8 C -0.160 4.160 9 C -0.226 4.226 10 C 0.382 3.618 11 O -0.418 6.418 12 O -0.235 6.235 13 C -0.015 4.015 14 C 0.226 3.774 15 O -0.459 6.459 16 N -0.193 5.193 17 C -0.429 4.429 18 H 0.124 0.876 19 C -0.179 4.179 20 N -0.539 5.539 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.207 1.207 24 H -0.207 1.207 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.189 0.811 33 H 0.173 0.827 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.228 0.772 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.395 1.127 21.785 22.733 hybrid contribution -0.065 -0.036 -0.559 0.564 sum -6.460 1.092 21.227 22.215 Atomic orbital electron populations 1.21745 0.95278 1.01815 1.01901 1.21426 0.96040 0.95301 1.02452 1.20430 0.86380 0.98815 1.04157 1.20533 0.93234 1.01198 0.85582 1.41526 1.06359 1.57847 1.08580 0.74725 1.21750 0.85429 1.11806 0.96623 1.22264 0.96366 1.04021 0.93313 1.19416 0.93861 1.20218 0.89106 1.20155 0.83640 0.72480 0.85529 1.90777 1.18084 1.48383 1.84526 1.86623 1.38257 1.82916 1.15720 1.22677 0.96828 1.03131 0.78890 1.19381 0.89280 0.85527 0.83220 1.90556 1.22948 1.55143 1.77212 1.41710 1.10104 1.63733 1.03788 1.19775 0.88997 1.47376 0.86762 0.87613 1.25297 0.97782 0.97096 0.97687 1.69631 1.19207 1.49844 1.15263 0.85753 0.80881 0.77750 0.79688 1.19112 1.20680 1.20689 0.92602 0.93046 0.92084 0.90876 0.92600 0.91259 0.87754 0.81148 0.82666 0.89704 0.89705 0.77185 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.88 16 2 C -0.11 -1.10 5.92 -26.73 -0.16 -1.26 16 3 C -0.06 -0.59 5.09 -27.89 -0.14 -0.73 16 4 C 0.11 1.30 6.47 -81.51 -0.53 0.78 16 5 N -0.55 -4.61 5.89 -8.88 -0.05 -4.67 16 6 H 0.42 1.92 8.96 -40.82 -0.37 1.56 16 7 C -0.03 -0.28 11.87 -16.85 -0.20 -0.48 16 8 C -0.14 -1.81 11.00 -37.49 -0.41 -2.23 16 9 C -0.22 -3.28 6.33 -103.01 -0.65 -3.93 16 10 C 0.54 9.67 7.95 34.33 0.27 9.94 16 11 O -0.53 -9.67 14.66 -19.30 -0.28 -9.95 16 12 O -0.32 -6.61 9.66 -47.40 -0.46 -7.06 16 13 C 0.06 1.27 5.95 36.01 0.21 1.49 16 14 C 0.44 11.07 7.86 -10.98 -0.09 10.98 16 15 O -0.57 -16.51 16.08 -14.12 -0.23 -16.74 16 16 N -0.56 -14.47 5.29 -10.96 -0.06 -14.53 16 17 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 18 H 0.11 3.12 7.16 -52.49 -0.38 2.74 16 19 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 20 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 21 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.90 8.01 -51.93 -0.42 0.48 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.10 1.24 6.79 -51.93 -0.35 0.88 16 32 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.16 2.13 8.06 -52.49 -0.42 1.71 16 34 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 35 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 36 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 37 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 329.27 15.07 4.96 4.96 Total: -1.00 -34.18 329.27 -6.75 -40.93 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -4.77 Total: 9.22 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -1.56 Total: 5.61 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.61 Total: -43.02 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.97 Total: -33.76 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.18 -6.75 -40.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817269949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.744 kcal (2) G-P(sol) polarization free energy of solvation -34.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds