Wall clock time and date at job start Tue Mar 31 2020 02:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47347 * 2 1 4 4 C 1.50698 * 109.47161 * 180.02562 * 3 2 1 5 5 N 1.34623 * 125.89916 * 264.97710 * 4 3 2 6 6 H 0.97006 * 124.80971 * 0.02562 * 5 4 3 7 7 C 1.36432 * 110.38395 * 180.02562 * 5 4 3 8 8 C 1.34435 * 109.08340 * 0.26671 * 7 5 4 9 9 C 1.37842 * 125.89720 * 85.00632 * 4 3 2 10 10 C 1.47116 * 127.02079 * 359.97438 * 9 4 3 11 11 O 1.21545 * 120.00054 * 359.97438 * 10 9 4 12 12 O 1.34784 * 119.99885 * 180.02562 * 10 9 4 13 13 C 1.45198 * 117.00048 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.47172 * 179.97438 * 13 12 10 15 15 O 1.21297 * 119.99946 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00117 * 180.02562 * 14 13 12 17 17 C 1.37103 * 119.99961 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99834 * 359.97438 * 17 16 14 19 19 C 1.38950 * 119.99904 * 180.02562 * 17 16 14 20 20 N 1.31414 * 119.99660 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00027 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47257 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.46894 * 119.99804 * 21 19 17 24 24 H 1.48494 * 109.47274 * 239.99666 * 21 19 17 25 25 H 1.09000 * 109.47546 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46624 * 299.99531 * 1 2 3 27 27 H 1.08996 * 109.47519 * 59.99292 * 1 2 3 28 28 H 1.09005 * 109.46624 * 240.00469 * 2 1 3 29 29 H 1.08996 * 109.47519 * 120.00708 * 2 1 3 30 30 H 1.09005 * 109.46875 * 60.00623 * 3 2 1 31 31 H 1.09000 * 109.47398 * 300.00278 * 3 2 1 32 32 H 1.08002 * 125.45555 * 179.97438 * 7 5 4 33 33 H 1.07995 * 126.81341 * 179.73256 * 8 7 5 34 34 H 1.08999 * 109.47065 * 299.99382 * 13 12 10 35 35 H 1.08994 * 109.47477 * 59.99604 * 13 12 10 36 36 H 0.96993 * 119.99969 * 359.97438 * 16 14 13 37 37 H 0.97009 * 119.99564 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3368 1.5377 1.0854 6 1 4.0167 1.6174 1.9976 7 6 5.6513 1.5063 0.7212 8 6 5.7344 1.3953 -0.6160 9 6 4.3547 1.3453 -1.1134 10 6 3.9220 1.2226 -2.5141 11 8 2.7372 1.1981 -2.7842 12 8 4.8394 1.1364 -3.4977 13 6 4.3403 1.0180 -4.8561 14 6 5.5019 0.9346 -5.8126 15 8 6.6386 0.9719 -5.3909 16 7 5.2777 0.8197 -7.1366 17 6 6.3345 0.7434 -8.0067 18 1 7.3465 0.7757 -7.6312 19 6 6.1033 0.6255 -9.3718 20 7 4.8718 0.5866 -9.8287 21 14 7.5431 0.5222 -10.5574 22 1 8.8166 0.5879 -9.7965 23 1 7.4780 -0.7595 -11.3047 24 1 7.4793 1.6565 -11.5136 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9562 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 6.4906 1.5662 1.3983 33 1 6.6373 1.3495 -1.2066 34 1 3.7327 0.1172 -4.9427 35 1 3.7332 1.8904 -5.0975 36 1 4.3687 0.7903 -7.4738 37 1 4.7104 0.5039 -10.7817 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817269949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:48 Heat of formation + Delta-G solvation = -115.178234 kcal Electronic energy + Delta-G solvation = -21070.059441 eV Core-core repulsion = 17618.876112 eV Total energy + Delta-G solvation = -3451.183329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.29748 -41.07790 -39.89741 -37.34134 -36.03766 -35.80765 -33.42019 -32.29448 -30.92975 -29.98109 -27.24274 -26.51505 -24.28432 -22.50092 -21.75342 -21.39489 -20.64955 -20.06175 -18.84408 -17.89553 -17.76274 -17.58271 -16.84871 -16.21389 -15.94210 -15.82180 -15.71522 -15.20812 -14.91596 -14.63613 -14.11199 -13.98489 -13.81917 -13.71255 -13.56635 -13.37090 -12.93692 -12.71050 -12.46685 -12.29241 -12.10996 -12.10294 -11.80416 -11.62164 -11.57890 -11.44214 -10.50838 -10.11764 -9.91487 -9.21759 -8.52266 -6.03048 0.41125 1.34754 1.40295 1.44147 1.49183 1.60944 1.86368 2.24208 2.26074 2.36877 3.12974 3.13031 3.70232 3.85985 4.01076 4.10681 4.15433 4.17519 4.22275 4.30763 4.34623 4.54879 4.66741 4.83765 4.95558 4.98785 5.03898 5.21524 5.32997 5.36875 5.41494 5.48906 5.67619 5.89282 5.90529 6.46938 6.60170 6.84896 7.03039 7.39576 7.93532 8.65215 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028599 B = 0.003276 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.820166 B = 8544.726118 C = 9400.546422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.058 4.058 4 C 0.130 3.870 5 N -0.524 5.524 6 H 0.440 0.560 7 C 0.006 3.994 8 C -0.180 4.180 9 C -0.266 4.266 10 C 0.529 3.471 11 O -0.539 6.539 12 O -0.344 6.344 13 C 0.074 3.926 14 C 0.437 3.563 15 O -0.618 6.618 16 N -0.558 5.558 17 C -0.339 4.339 18 H 0.084 0.916 19 C -0.009 4.009 20 N -0.916 5.916 21 Si 1.000 3.000 22 H -0.271 1.271 23 H -0.268 1.268 24 H -0.268 1.268 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.215 0.785 33 H 0.137 0.863 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.400 0.600 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.346 1.310 23.759 24.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.096 4.096 4 C 0.008 3.992 5 N -0.121 5.121 6 H 0.282 0.718 7 C -0.121 4.121 8 C -0.203 4.203 9 C -0.274 4.274 10 C 0.377 3.623 11 O -0.431 6.431 12 O -0.260 6.260 13 C -0.004 4.004 14 C 0.224 3.776 15 O -0.504 6.504 16 N -0.195 5.195 17 C -0.468 4.468 18 H 0.102 0.898 19 C -0.210 4.210 20 N -0.556 5.556 21 Si 0.823 3.177 22 H -0.196 1.196 23 H -0.193 1.193 24 H -0.193 1.193 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.127 0.873 31 H 0.099 0.901 32 H 0.232 0.768 33 H 0.155 0.845 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.234 0.766 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.999 1.324 23.886 24.926 hybrid contribution 0.070 -0.092 -1.108 1.114 sum -6.929 1.232 22.778 23.841 Atomic orbital electron populations 1.21727 0.94165 1.02239 1.02338 1.21387 0.96994 0.94936 1.01619 1.20475 0.85181 0.99068 1.04911 1.20667 0.93964 0.99165 0.85354 1.41533 1.05717 1.55762 1.09107 0.71816 1.22249 0.86647 1.07672 0.95552 1.22276 0.95284 1.07444 0.95284 1.19556 0.95716 1.23884 0.88269 1.20744 0.83301 0.72063 0.86157 1.90749 1.18230 1.49395 1.84747 1.86623 1.39752 1.83681 1.15918 1.22449 0.94583 1.04789 0.78542 1.20102 0.90000 0.84032 0.83455 1.90515 1.25112 1.56852 1.77944 1.41735 1.09967 1.63660 1.04147 1.19774 0.88763 1.50184 0.88031 0.89841 1.26153 1.00657 0.95637 0.98541 1.69689 1.20685 1.48982 1.16214 0.84777 0.77199 0.78492 0.77279 1.19582 1.19329 1.19343 0.92241 0.90743 0.93479 0.94367 0.90740 0.87345 0.90114 0.76826 0.84475 0.87926 0.87875 0.76573 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 71.98 0.71 -1.48 16 2 C -0.11 -1.99 5.92 30.59 0.18 -1.81 16 3 C -0.06 -1.04 5.09 29.85 0.15 -0.89 16 4 C 0.13 2.77 6.47 42.04 0.27 3.04 16 5 N -0.52 -6.95 5.89 -182.02 -1.07 -8.03 16 6 H 0.44 1.85 8.96 -92.70 -0.83 1.02 16 7 C 0.01 0.09 11.87 83.11 0.99 1.08 16 8 C -0.18 -4.80 11.00 23.62 0.26 -4.54 16 9 C -0.27 -8.13 6.33 -18.82 -0.12 -8.25 16 10 C 0.53 19.95 7.95 70.15 0.56 20.50 16 11 O -0.54 -20.53 14.66 19.69 0.29 -20.24 16 12 O -0.34 -14.92 9.66 -50.56 -0.49 -15.41 16 13 C 0.07 3.11 5.95 71.24 0.42 3.54 16 14 C 0.44 22.90 7.86 87.66 0.69 23.58 16 15 O -0.62 -37.28 16.08 15.72 0.25 -37.03 16 16 N -0.56 -30.02 5.29 -306.97 -1.62 -31.65 16 17 C -0.34 -19.67 9.68 84.04 0.81 -18.86 16 18 H 0.08 5.15 7.16 -2.91 -0.02 5.13 16 19 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 20 N -0.92 -49.79 13.05 21.66 0.28 -49.50 16 21 Si 1.00 43.04 29.55 68.60 2.03 45.07 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.04 0.95 8.01 -2.38 -0.02 0.93 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.11 1.08 8.14 -2.38 -0.02 1.07 16 31 H 0.08 1.88 6.79 -2.39 -0.02 1.87 16 32 H 0.22 1.51 8.06 -2.91 -0.02 1.49 16 33 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 34 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 35 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 36 H 0.40 20.27 7.90 -92.71 -0.73 19.54 16 37 H 0.28 14.15 8.31 -92.70 -0.77 13.38 16 Total: -1.00 -77.54 329.27 4.61 -72.92 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: -0.45 Total: 27.99 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 5.40 Total: 15.87 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -2.41 Total: -89.18 kcal Atomic # 8 Polarization: -72.73 SS G_CDS: 0.05 Total: -72.68 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -77.54 4.61 -72.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817269949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.253 kcal (2) G-P(sol) polarization free energy of solvation -77.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds