Wall clock time and date at job start Tue Mar 31 2020 01:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99645 * 2 1 4 4 H 1.48501 * 109.46721 * 269.99746 * 3 2 1 5 5 H 1.48494 * 109.47226 * 29.99438 * 3 2 1 6 6 H 1.48493 * 109.47111 * 149.99979 * 3 2 1 7 7 C 1.37873 * 120.00469 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99644 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00143 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47042 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47352 * 179.97438 * 10 9 7 12 12 C 1.46901 * 111.00454 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47385 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.46770 * 304.99650 * 13 12 11 15 15 O 1.42898 * 109.46935 * 64.99482 * 13 12 11 16 16 C 1.50693 * 109.47309 * 184.99791 * 13 12 11 17 17 C 1.38258 * 120.00006 * 280.23961 * 16 13 12 18 18 C 1.38212 * 120.00085 * 180.27603 * 17 16 13 19 19 C 1.38260 * 120.00041 * 359.73665 * 18 17 16 20 20 C 1.38214 * 119.99662 * 0.02562 * 19 18 17 21 21 N 1.48021 * 119.99473 * 179.97438 * 20 19 18 22 22 O 1.21803 * 119.99589 * 180.02562 * 21 20 19 23 23 O 1.21799 * 120.00272 * 0.02562 * 21 20 19 24 24 C 1.38211 * 120.00164 * 99.99404 * 16 13 12 25 25 H 0.96993 * 120.00247 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47061 * 59.99750 * 9 7 2 27 27 H 1.08994 * 109.46767 * 299.99620 * 9 7 2 28 28 H 1.09007 * 109.47512 * 59.99816 * 10 9 7 29 29 H 1.09007 * 109.47233 * 299.99900 * 10 9 7 30 30 H 1.00897 * 111.00388 * 56.04421 * 11 10 9 31 31 H 1.08996 * 109.47164 * 59.99642 * 12 11 10 32 32 H 1.09004 * 109.46781 * 299.99614 * 12 11 10 33 33 H 0.96699 * 114.00158 * 60.00870 * 15 13 12 34 34 H 1.08004 * 120.00379 * 359.97438 * 17 16 13 35 35 H 1.08001 * 120.00378 * 179.72174 * 18 17 16 36 36 H 1.07997 * 119.99889 * 179.97438 * 19 18 17 37 37 H 1.08002 * 120.00200 * 0.02562 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5117 -1.1939 0.0011 10 6 4.0217 -2.6363 0.0023 11 7 5.4907 -2.6363 0.0022 12 6 6.0172 -4.0077 0.0027 13 6 7.5467 -3.9668 0.0020 14 1 7.8937 -3.3684 -0.8403 15 8 8.0081 -3.3842 1.2225 16 6 8.0866 -5.3683 -0.1213 17 6 8.1389 -6.1892 0.9900 18 6 8.6394 -7.4727 0.8781 19 6 9.0828 -7.9375 -0.3462 20 6 9.0260 -7.1185 -1.4580 21 7 9.5012 -7.6160 -2.7686 22 8 9.4516 -6.8941 -3.7484 23 8 9.9418 -8.7472 -2.8673 24 6 8.5249 -5.8348 -1.3462 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6798 0.8911 27 1 3.8752 -0.6803 -0.8888 28 1 3.6587 -3.1508 -0.8875 29 1 3.6581 -3.1496 0.8925 30 1 5.8523 -2.1095 0.7831 31 1 5.6677 -4.5314 -0.8870 32 1 5.6678 -4.5307 0.8930 33 1 7.7360 -3.8656 2.0157 34 1 7.7931 -5.8260 1.9465 35 1 8.6844 -8.1124 1.7471 36 1 9.4742 -8.9402 -0.4334 37 1 8.4808 -5.1948 -2.2151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819220435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:19 Heat of formation + Delta-G solvation = -34.131391 kcal Electronic energy + Delta-G solvation = -20697.214873 eV Core-core repulsion = 17249.545999 eV Total energy + Delta-G solvation = -3447.668874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.48403 -40.39434 -37.87990 -36.84968 -35.58894 -33.03962 -32.52084 -32.33682 -30.38076 -27.61536 -26.95506 -24.46875 -23.22440 -22.77062 -21.70176 -20.47640 -19.43193 -18.94909 -17.81733 -17.45102 -16.85114 -16.69343 -16.55165 -15.60782 -15.21681 -14.58786 -14.47059 -14.19144 -13.92004 -13.35945 -13.10502 -12.85025 -12.63319 -12.55121 -12.26066 -11.85782 -11.58761 -11.49700 -11.41747 -11.35073 -11.06474 -10.72785 -10.25533 -10.10685 -9.91635 -9.84190 -9.57694 -9.28598 -8.57986 -8.13585 -6.08744 -4.07895 -0.54986 0.38574 0.96425 1.05365 2.73713 3.30445 3.37464 3.41801 3.67076 3.91169 3.98172 4.17661 4.28691 4.41694 4.42585 4.46243 4.77182 4.80859 4.97137 5.06105 5.21801 5.25827 5.34942 5.45856 5.54052 5.66651 5.84507 6.06474 6.08739 6.13718 6.67247 6.99235 7.16815 7.30471 7.32608 7.46031 7.64855 7.80816 8.47412 8.94419 9.53326 11.04472 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027982 B = 0.002840 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.417549 B = 9857.010544 C =10192.807577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.073 3.927 11 N -0.690 5.690 12 C 0.033 3.967 13 C 0.148 3.852 14 H 0.125 0.875 15 O -0.546 6.546 16 C -0.107 4.107 17 C -0.061 4.061 18 C -0.113 4.113 19 C -0.058 4.058 20 C -0.042 4.042 21 N 0.028 4.972 22 O -0.155 6.155 23 O -0.162 6.162 24 C -0.043 4.043 25 H 0.264 0.736 26 H 0.014 0.986 27 H 0.022 0.978 28 H 0.065 0.935 29 H 0.022 0.978 30 H 0.343 0.657 31 H 0.081 0.919 32 H 0.031 0.969 33 H 0.371 0.629 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.261 -15.541 3.555 25.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.088 0.912 9 C -0.047 4.047 10 C -0.054 4.054 11 N -0.321 5.321 12 C -0.097 4.097 13 C 0.088 3.912 14 H 0.143 0.857 15 O -0.351 6.351 16 C -0.109 4.109 17 C -0.079 4.079 18 C -0.131 4.131 19 C -0.077 4.077 20 C -0.124 4.124 21 N 0.547 4.453 22 O -0.372 6.372 23 O -0.377 6.377 24 C -0.062 4.062 25 H 0.073 0.927 26 H 0.032 0.968 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.041 0.959 30 H 0.161 0.839 31 H 0.099 0.901 32 H 0.049 0.951 33 H 0.219 0.781 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 20.171 -14.684 3.094 25.141 hybrid contribution -0.062 -0.077 0.875 0.880 sum 20.109 -14.761 3.969 25.259 Atomic orbital electron populations 1.69911 1.06348 1.27019 1.50926 1.25012 0.94743 0.99276 0.94375 0.86724 0.80259 0.83324 0.78654 1.20171 1.21469 1.18940 1.21049 0.89318 0.94531 1.51332 0.91158 1.19539 0.96708 0.91616 0.96867 1.21988 0.83559 1.00380 0.99516 1.60523 1.10118 1.11077 1.50425 1.22588 0.92930 0.92709 1.01499 1.21025 0.93184 0.87821 0.89140 0.85713 1.86722 1.78208 1.54964 1.15167 1.20703 0.99349 0.98402 0.92466 1.21424 0.94307 0.93195 0.99015 1.21198 0.98652 0.96199 0.97072 1.21107 0.95715 1.00322 0.90575 1.21121 1.10293 0.97047 0.83982 1.43627 0.98305 1.00483 1.02840 1.94574 1.59377 1.55225 1.28018 1.94535 1.46887 1.04522 1.91777 1.20940 0.92881 0.92966 0.99429 0.92657 0.96774 0.95982 0.91697 0.95949 0.83851 0.90080 0.95106 0.78122 0.84083 0.83288 0.82871 0.82489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -14.79 9.66 -34.44 -0.33 -15.13 16 8 H 0.07 2.12 7.99 -52.48 -0.42 1.71 16 9 C -0.01 -0.22 4.30 -27.88 -0.12 -0.34 16 10 C 0.07 1.40 5.62 -3.83 -0.02 1.38 16 11 N -0.69 -10.55 6.50 -113.78 -0.74 -11.29 16 12 C 0.03 0.37 5.33 -3.82 -0.02 0.35 16 13 C 0.15 1.35 3.44 -27.89 -0.10 1.25 16 14 H 0.13 1.24 8.00 -51.93 -0.42 0.82 16 15 O -0.55 -4.98 12.71 -35.23 -0.45 -5.43 16 16 C -0.11 -0.83 4.97 -104.63 -0.52 -1.35 16 17 C -0.06 -0.35 9.32 -39.58 -0.37 -0.72 16 18 C -0.11 -0.57 10.05 -39.58 -0.40 -0.97 16 19 C -0.06 -0.40 9.56 -39.58 -0.38 -0.78 16 20 C -0.04 -0.39 6.85 -79.95 -0.55 -0.94 16 21 N 0.03 0.33 4.45 33.96 0.15 0.48 16 22 O -0.15 -2.01 18.45 -29.46 -0.54 -2.56 16 23 O -0.16 -1.98 18.45 -29.46 -0.54 -2.53 16 24 C -0.04 -0.38 9.18 -39.58 -0.36 -0.74 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 26 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 27 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.34 5.10 8.29 -39.29 -0.33 4.77 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.37 2.01 7.51 45.56 0.34 2.35 16 34 H 0.14 0.44 6.80 -52.48 -0.36 0.08 16 35 H 0.15 0.33 8.06 -52.49 -0.42 -0.09 16 36 H 0.15 0.85 7.61 -52.49 -0.40 0.45 16 37 H 0.16 1.32 7.59 -52.49 -0.40 0.92 16 LS Contribution 324.00 15.07 4.88 4.88 Total: -1.00 -33.26 324.00 -8.42 -41.68 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -4.02 Total: 0.82 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -3.26 Total: -16.13 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.19 Total: -37.76 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -1.53 Total: -10.51 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.26 -8.42 -41.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819220435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.546 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds