Wall clock time and date at job start Tue Mar 31 2020 01:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86804 * 120.00158 * 2 1 4 4 H 1.48500 * 109.47320 * 270.00447 * 3 2 1 5 5 H 1.48510 * 109.46926 * 30.00322 * 3 2 1 6 6 H 1.48495 * 109.47160 * 149.99749 * 3 2 1 7 7 C 1.40049 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99826 * 179.97438 * 7 2 1 9 9 C 1.46375 * 119.99741 * 359.71936 * 7 2 1 10 10 O 1.21685 * 119.99737 * 0.28305 * 9 7 2 11 11 N 1.34777 * 120.00144 * 180.27415 * 9 7 2 12 12 C 1.46494 * 120.00258 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47202 * 173.18710 * 12 11 9 14 14 H 1.09000 * 110.33019 * 60.94968 * 13 12 11 15 15 C 1.54906 * 110.37198 * 183.31745 * 13 12 11 16 16 C 1.55143 * 101.65272 * 155.89827 * 15 13 12 17 17 C 1.54324 * 103.01581 * 324.34963 * 16 15 13 18 18 N 1.47438 * 107.23360 * 22.28503 * 17 16 15 19 19 C 1.46902 * 111.00080 * 123.25832 * 18 17 16 20 20 C 1.52998 * 109.47298 * 57.55636 * 19 18 17 21 21 F 1.39899 * 109.47212 * 53.45623 * 20 19 18 22 22 F 1.39900 * 109.47219 * 173.45182 * 20 19 18 23 23 F 1.39894 * 109.47148 * 293.45749 * 20 19 18 24 24 H 0.97009 * 120.00232 * 359.97438 * 1 2 3 25 25 H 0.97007 * 119.99462 * 0.02562 * 11 9 7 26 26 H 1.09002 * 109.46688 * 293.18642 * 12 11 9 27 27 H 1.08998 * 109.47377 * 53.18446 * 12 11 9 28 28 H 1.08997 * 110.99430 * 273.99105 * 15 13 12 29 29 H 1.09000 * 110.99020 * 37.81275 * 15 13 12 30 30 H 1.08994 * 110.71193 * 205.96852 * 16 15 13 31 31 H 1.08997 * 110.70358 * 82.72802 * 16 15 13 32 32 H 1.08993 * 109.88926 * 262.86959 * 17 16 15 33 33 H 1.09004 * 110.02144 * 141.76251 * 17 16 15 34 34 H 1.09002 * 109.47015 * 177.55612 * 19 18 17 35 35 H 1.08996 * 109.47010 * 297.55334 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4382 2.6527 0.7002 6 1 3.5382 1.4402 0.7001 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2127 -0.0010 9 6 1.2751 -2.4805 0.0051 10 8 0.0583 -2.4804 0.0051 11 7 1.9490 -3.6477 0.0102 12 6 1.2166 -4.9164 0.0152 13 6 2.2020 -6.0749 -0.1508 14 1 2.9137 -6.0879 0.6747 15 6 1.4418 -7.4221 -0.2318 16 6 2.4575 -8.3095 -0.9985 17 6 3.1045 -7.3197 -1.9902 18 7 2.9134 -5.9645 -1.4420 19 6 4.2012 -5.2771 -1.2766 20 6 4.9242 -5.2174 -2.6236 21 9 4.0776 -4.6508 -3.5825 22 9 6.0775 -4.4353 -2.4996 23 9 5.2784 -6.5112 -3.0205 24 1 -0.4851 0.8401 0.0004 25 1 2.9191 -3.6476 0.0104 26 1 0.6842 -5.0247 0.9602 27 1 0.5018 -4.9266 -0.8076 28 1 1.2479 -7.8216 0.7636 29 1 0.5148 -7.3141 -0.7949 30 1 1.9446 -9.1096 -1.5320 31 1 3.2049 -8.7163 -0.3173 32 1 2.6186 -7.3984 -2.9627 33 1 4.1688 -7.5329 -2.0894 34 1 4.0283 -4.2646 -0.9118 35 1 4.8143 -5.8221 -0.5589 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830948525.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:26 Heat of formation + Delta-G solvation = -179.583667 kcal Electronic energy + Delta-G solvation = -23050.367317 eV Core-core repulsion = 19054.534419 eV Total energy + Delta-G solvation = -3995.832898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.10931 -47.71984 -47.40934 -39.44734 -36.98698 -33.33713 -32.99234 -32.24903 -29.56465 -27.94915 -26.45452 -24.34833 -23.05801 -21.33443 -20.35391 -19.55697 -18.54363 -18.43301 -17.32270 -17.02480 -16.35843 -15.49622 -15.14598 -14.91364 -14.43676 -14.36880 -14.12756 -13.87777 -13.81490 -13.67788 -13.56426 -13.32860 -13.07285 -12.67662 -12.56114 -12.17564 -11.64964 -11.36697 -11.28026 -11.20461 -10.95710 -10.88159 -10.76378 -10.64123 -10.39413 -10.17579 -8.81692 -8.48457 -7.57347 -7.45143 -6.14921 -4.60448 2.72176 3.16939 3.23515 3.26415 3.48601 3.80545 4.04381 4.12854 4.37094 4.45911 4.63364 4.65436 4.87786 4.94047 5.02821 5.16666 5.27523 5.44738 5.59521 5.67178 5.75206 5.79511 5.84942 5.97782 6.14875 6.30319 6.57016 6.77521 6.89590 7.46080 7.93096 8.12436 8.34942 9.06041 9.55116 10.63963 10.82847 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.018075 B = 0.005735 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.729294 B = 4881.417732 C = 6106.468063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.089 3.911 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.556 3.444 10 O -0.580 6.580 11 N -0.764 5.764 12 C 0.148 3.852 13 C 0.066 3.934 14 H 0.061 0.939 15 C -0.120 4.120 16 C -0.138 4.138 17 C 0.006 3.994 18 N -0.510 5.510 19 C 0.001 3.999 20 C 0.457 3.543 21 F -0.165 7.165 22 F -0.183 7.183 23 F -0.185 7.185 24 H 0.268 0.732 25 H 0.371 0.629 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.128 0.872 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.034 -14.771 -2.017 17.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.360 3.640 10 O -0.462 6.462 11 N -0.422 5.422 12 C 0.022 3.978 13 C -0.041 4.041 14 H 0.079 0.921 15 C -0.159 4.159 16 C -0.177 4.177 17 C -0.121 4.121 18 N -0.235 5.235 19 C -0.129 4.129 20 C 0.402 3.598 21 F -0.147 7.147 22 F -0.165 7.165 23 F -0.167 7.167 24 H 0.078 0.922 25 H 0.205 0.795 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.145 0.855 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.662 -14.357 -2.391 16.937 hybrid contribution 1.605 0.375 0.279 1.672 sum 10.267 -13.982 -2.112 17.474 Atomic orbital electron populations 1.70020 1.07031 1.27180 1.35451 1.25684 0.94590 1.00212 0.92621 0.86410 0.80135 0.81553 0.78866 1.19710 1.20485 1.18960 1.20863 0.93436 0.89513 1.54533 0.91653 1.18183 0.87209 0.82392 0.76227 1.90597 1.14076 1.86802 1.54772 1.46233 1.07970 1.05117 1.82862 1.20881 0.93472 0.82866 1.00573 1.22948 0.95881 0.96361 0.88953 0.92089 1.22692 0.98882 0.93302 1.01018 1.22748 0.98532 0.98198 0.98201 1.23539 1.02366 0.86961 0.99235 1.63520 1.15862 1.17804 1.26286 1.23608 0.92469 1.05302 0.91509 1.20437 0.77436 0.73104 0.88784 1.93249 1.70356 1.84692 1.66371 1.93193 1.51852 1.75220 1.96191 1.93015 1.92497 1.38680 1.92465 0.92154 0.79513 0.93198 0.91919 0.90368 0.89881 0.90578 0.91568 0.89991 0.89962 0.85469 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.27 11.83 55.55 0.66 -22.62 16 2 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 3 Si 0.91 20.34 29.56 -169.99 -5.02 15.31 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.55 -15.50 9.54 -35.63 -0.34 -15.84 16 8 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 9 C 0.56 15.87 7.75 -12.99 -0.10 15.77 16 10 O -0.58 -18.93 15.00 5.20 0.08 -18.85 16 11 N -0.76 -16.82 5.34 -61.72 -0.33 -17.15 16 12 C 0.15 2.76 5.40 -4.04 -0.02 2.74 16 13 C 0.07 0.89 2.68 -66.19 -0.18 0.71 16 14 H 0.06 0.75 7.75 -51.93 -0.40 0.35 16 15 C -0.12 -1.31 6.50 -24.59 -0.16 -1.47 16 16 C -0.14 -1.29 6.94 -24.90 -0.17 -1.46 16 17 C 0.01 0.07 5.91 -2.84 -0.02 0.05 16 18 N -0.51 -6.95 4.65 -223.39 -1.04 -7.99 16 19 C 0.00 0.02 4.69 -3.82 -0.02 0.00 16 20 C 0.46 6.01 3.08 37.16 0.11 6.13 16 21 F -0.17 -2.63 17.12 2.25 0.04 -2.59 16 22 F -0.18 -2.43 17.32 2.25 0.04 -2.39 16 23 F -0.19 -2.22 13.95 2.25 0.03 -2.19 16 24 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 25 H 0.37 7.12 5.43 -40.82 -0.22 6.90 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 1.32 8.11 -51.93 -0.42 0.90 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.86 4.89 -51.93 -0.25 0.61 16 34 H 0.13 1.78 5.26 -51.93 -0.27 1.51 16 35 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 LS Contribution 298.46 15.07 4.50 4.50 Total: -1.00 -34.34 298.46 -6.11 -40.45 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.07 Total: 4.49 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -0.99 Total: 9.02 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.71 Total: -47.76 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.08 Total: -18.85 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 0.11 Total: -7.18 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.34 -6.11 -40.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830948525.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.131 kcal (2) G-P(sol) polarization free energy of solvation -34.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds