Wall clock time and date at job start Tue Mar 31 2020 01:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86804 * 120.00158 * 2 1 4 4 H 1.48500 * 109.47320 * 270.00447 * 3 2 1 5 5 H 1.48510 * 109.46926 * 30.00322 * 3 2 1 6 6 H 1.48495 * 109.47160 * 149.99749 * 3 2 1 7 7 C 1.40049 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99826 * 179.97438 * 7 2 1 9 9 C 1.46375 * 119.99741 * 359.71936 * 7 2 1 10 10 O 1.21685 * 119.99737 * 0.28305 * 9 7 2 11 11 N 1.34777 * 120.00144 * 180.27415 * 9 7 2 12 12 C 1.46494 * 120.00258 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47202 * 173.18710 * 12 11 9 14 14 H 1.09000 * 110.33019 * 60.94968 * 13 12 11 15 15 C 1.54906 * 110.37198 * 183.31745 * 13 12 11 16 16 C 1.55143 * 101.65272 * 155.89827 * 15 13 12 17 17 C 1.54324 * 103.01581 * 324.34963 * 16 15 13 18 18 N 1.47438 * 107.23360 * 22.28503 * 17 16 15 19 19 C 1.46902 * 111.00080 * 123.25832 * 18 17 16 20 20 C 1.52998 * 109.47298 * 57.55636 * 19 18 17 21 21 F 1.39899 * 109.47212 * 53.45623 * 20 19 18 22 22 F 1.39900 * 109.47219 * 173.45182 * 20 19 18 23 23 F 1.39894 * 109.47148 * 293.45749 * 20 19 18 24 24 H 0.97009 * 120.00232 * 359.97438 * 1 2 3 25 25 H 0.97007 * 119.99462 * 0.02562 * 11 9 7 26 26 H 1.09002 * 109.46688 * 293.18642 * 12 11 9 27 27 H 1.08998 * 109.47377 * 53.18446 * 12 11 9 28 28 H 1.08997 * 110.99430 * 273.99105 * 15 13 12 29 29 H 1.09000 * 110.99020 * 37.81275 * 15 13 12 30 30 H 1.08994 * 110.71193 * 205.96852 * 16 15 13 31 31 H 1.08997 * 110.70358 * 82.72802 * 16 15 13 32 32 H 1.08993 * 109.88926 * 262.86959 * 17 16 15 33 33 H 1.09004 * 110.02144 * 141.76251 * 17 16 15 34 34 H 1.09002 * 109.47015 * 177.55612 * 19 18 17 35 35 H 1.08996 * 109.47010 * 297.55334 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4382 2.6527 0.7002 6 1 3.5382 1.4402 0.7001 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2127 -0.0010 9 6 1.2751 -2.4805 0.0051 10 8 0.0583 -2.4804 0.0051 11 7 1.9490 -3.6477 0.0102 12 6 1.2166 -4.9164 0.0152 13 6 2.2020 -6.0749 -0.1508 14 1 2.9137 -6.0879 0.6747 15 6 1.4418 -7.4221 -0.2318 16 6 2.4575 -8.3095 -0.9985 17 6 3.1045 -7.3197 -1.9902 18 7 2.9134 -5.9645 -1.4420 19 6 4.2012 -5.2771 -1.2766 20 6 4.9242 -5.2174 -2.6236 21 9 4.0776 -4.6508 -3.5825 22 9 6.0775 -4.4353 -2.4996 23 9 5.2784 -6.5112 -3.0205 24 1 -0.4851 0.8401 0.0004 25 1 2.9191 -3.6476 0.0104 26 1 0.6842 -5.0247 0.9602 27 1 0.5018 -4.9266 -0.8076 28 1 1.2479 -7.8216 0.7636 29 1 0.5148 -7.3141 -0.7949 30 1 1.9446 -9.1096 -1.5320 31 1 3.2049 -8.7163 -0.3173 32 1 2.6186 -7.3984 -2.9627 33 1 4.1688 -7.5329 -2.0894 34 1 4.0283 -4.2646 -0.9118 35 1 4.8143 -5.8221 -0.5589 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830948525.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:25 Heat of formation + Delta-G solvation = -205.462689 kcal Electronic energy + Delta-G solvation = -23051.489516 eV Core-core repulsion = 19054.534419 eV Total energy + Delta-G solvation = -3996.955097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.17036 -48.74459 -48.54790 -40.56609 -38.99339 -35.19243 -34.38544 -33.94139 -30.97496 -28.92806 -28.40778 -25.79163 -24.17088 -22.32325 -21.64667 -21.33975 -19.64007 -19.52385 -19.11755 -18.10955 -17.53505 -17.34003 -16.49117 -16.07013 -16.00094 -15.69474 -15.45187 -15.22664 -14.99649 -14.80665 -14.73077 -14.54083 -14.32128 -14.20536 -13.70353 -13.62246 -13.14233 -13.07093 -12.76530 -12.62431 -12.36139 -12.26330 -12.11964 -11.94103 -11.82933 -11.51584 -10.91994 -9.84327 -9.48301 -9.40414 -8.27176 -6.83359 1.40486 1.42287 1.56966 1.68248 2.25493 2.45341 2.50917 2.78804 2.97496 3.12866 3.35764 3.65838 3.74209 3.75768 3.98173 4.11623 4.18825 4.23377 4.39213 4.61433 4.72047 4.79861 4.89665 5.00379 5.05947 5.16205 5.32978 5.34335 5.79448 5.83214 5.88762 6.25591 6.31019 6.88707 7.56018 8.52157 8.70061 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.018075 B = 0.005735 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.729294 B = 4881.417732 C = 6106.468063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.029 3.971 3 Si 0.995 3.005 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.247 1.247 7 C -0.574 4.574 8 H 0.086 0.914 9 C 0.538 3.462 10 O -0.633 6.633 11 N -0.750 5.750 12 C 0.148 3.852 13 C 0.077 3.923 14 H 0.084 0.916 15 C -0.118 4.118 16 C -0.126 4.126 17 C 0.006 3.994 18 N -0.538 5.538 19 C 0.004 3.996 20 C 0.459 3.541 21 F -0.186 7.186 22 F -0.183 7.183 23 F -0.176 7.176 24 H 0.274 0.726 25 H 0.388 0.612 26 H 0.044 0.956 27 H 0.029 0.971 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.467 -15.594 -1.465 20.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.814 3.186 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.170 1.170 7 C -0.611 4.611 8 H 0.104 0.896 9 C 0.342 3.658 10 O -0.521 6.521 11 N -0.406 5.406 12 C 0.023 3.977 13 C -0.031 4.031 14 H 0.102 0.898 15 C -0.156 4.156 16 C -0.164 4.164 17 C -0.120 4.120 18 N -0.264 5.264 19 C -0.126 4.126 20 C 0.405 3.595 21 F -0.168 7.168 22 F -0.165 7.165 23 F -0.157 7.157 24 H 0.084 0.916 25 H 0.224 0.776 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.117 0.883 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.127 0.873 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.152 -15.240 -1.842 18.974 hybrid contribution 0.845 0.556 0.070 1.014 sum 11.996 -14.684 -1.772 19.044 Atomic orbital electron populations 1.70192 1.09527 1.28841 1.36664 1.26951 0.95496 1.04915 0.91236 0.85065 0.78909 0.75261 0.79341 1.18874 1.19723 1.17002 1.21420 0.94621 0.90215 1.54805 0.89589 1.18590 0.86831 0.84454 0.75947 1.90548 1.16303 1.88015 1.57211 1.45890 1.08841 1.04863 1.81016 1.20981 0.94357 0.83411 0.98919 1.22798 0.95388 0.95059 0.89857 0.89833 1.22701 0.98456 0.92109 1.02369 1.22723 0.98307 0.97594 0.97764 1.23555 1.03170 0.86124 0.99169 1.63331 1.16825 1.19665 1.26545 1.23586 0.92629 1.04716 0.91683 1.20517 0.77211 0.73218 0.88602 1.93209 1.71108 1.85144 1.67322 1.93191 1.51808 1.75346 1.96154 1.93027 1.92387 1.37908 1.92418 0.91642 0.77602 0.93832 0.95214 0.88278 0.91353 0.89138 0.89429 0.91156 0.88824 0.87271 0.86909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.29 11.83 21.84 0.26 -51.03 16 2 C 0.03 1.64 5.50 85.31 0.47 2.11 16 3 Si 0.99 41.54 29.56 68.60 2.03 43.57 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 6 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 7 C -0.57 -32.91 9.54 24.83 0.24 -32.67 16 8 H 0.09 4.39 7.85 -2.91 -0.02 4.37 16 9 C 0.54 31.67 7.75 86.36 0.67 32.34 16 10 O -0.63 -43.34 15.00 -4.30 -0.06 -43.40 16 11 N -0.75 -33.53 5.34 -467.42 -2.50 -36.02 16 12 C 0.15 5.66 5.40 86.38 0.47 6.13 16 13 C 0.08 1.94 2.68 45.39 0.12 2.07 16 14 H 0.08 1.78 7.75 -2.39 -0.02 1.77 16 15 C -0.12 -2.31 6.50 31.98 0.21 -2.10 16 16 C -0.13 -1.91 6.94 31.78 0.22 -1.69 16 17 C 0.01 0.13 5.91 86.65 0.51 0.64 16 18 N -0.54 -13.89 4.65 -860.68 -4.00 -17.90 16 19 C 0.00 0.09 4.69 86.30 0.40 0.49 16 20 C 0.46 11.40 3.08 71.98 0.22 11.62 16 21 F -0.19 -5.88 17.12 44.97 0.77 -5.11 16 22 F -0.18 -4.59 17.32 44.97 0.78 -3.81 16 23 F -0.18 -3.84 13.95 44.97 0.63 -3.22 16 24 H 0.27 15.45 8.29 -92.70 -0.77 14.68 16 25 H 0.39 14.74 5.43 -92.70 -0.50 14.24 16 26 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.03 1.32 8.11 -2.39 -0.02 1.30 16 28 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 1.55 8.06 -2.39 -0.02 1.53 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 1.66 4.89 -2.39 -0.01 1.65 16 34 H 0.11 2.92 5.26 -2.39 -0.01 2.91 16 35 H 0.11 1.81 8.05 -2.39 -0.02 1.79 16 Total: -1.00 -77.83 298.46 2.05 -75.78 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.63 Total: 22.21 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: 3.53 Total: 18.93 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -6.24 Total: -104.95 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -0.06 Total: -43.40 kcal Atomic # 9 Polarization: -14.31 SS G_CDS: 2.18 Total: -12.14 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -77.83 2.05 -75.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830948525.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.687 kcal (2) G-P(sol) polarization free energy of solvation -77.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds