Wall clock time and date at job start Tue Mar 31 2020 01:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99993 * 2 1 4 4 H 1.48493 * 109.47531 * 270.00193 * 3 2 1 5 5 H 1.48506 * 109.46787 * 30.00258 * 3 2 1 6 6 H 1.48497 * 109.47283 * 149.99865 * 3 2 1 7 7 C 1.38814 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99758 * 204.32356 * 7 2 1 9 9 N 1.36937 * 119.99918 * 24.32433 * 7 2 1 10 10 C 1.46497 * 119.99709 * 7.29785 * 9 7 2 11 11 C 1.50698 * 109.47218 * 271.69233 * 10 9 7 12 12 O 1.20824 * 119.99864 * 0.02562 * 11 10 9 13 13 O 1.34228 * 120.00524 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00143 * 187.29560 * 9 7 2 15 15 C 1.50697 * 109.47223 * 89.99857 * 14 9 7 16 16 N 1.30699 * 127.01948 * 270.04873 * 15 14 9 17 17 O 1.21465 * 111.68990 * 179.68345 * 16 15 14 18 18 C 1.33168 * 111.26987 * 0.34941 * 17 16 15 19 19 C 1.35506 * 106.46182 * 359.73017 * 18 17 16 20 20 C 1.50076 * 124.86314 * 180.02562 * 19 18 17 21 21 C 1.53541 * 108.22970 * 343.84157 * 20 19 18 22 22 C 1.53103 * 109.53269 * 49.25794 * 21 20 19 23 23 C 1.50564 * 129.72519 * 179.97438 * 18 17 16 24 24 H 0.97003 * 119.99880 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47667 * 31.69830 * 10 9 7 26 26 H 1.09009 * 109.46919 * 151.69729 * 10 9 7 27 27 H 0.96695 * 117.00554 * 179.97438 * 13 11 10 28 28 H 1.09002 * 109.46924 * 330.00124 * 14 9 7 29 29 H 1.08993 * 109.47200 * 210.00150 * 14 9 7 30 30 H 1.09003 * 109.71322 * 224.15681 * 20 19 18 31 31 H 1.09000 * 109.71297 * 103.52693 * 20 19 18 32 32 H 1.09006 * 109.46308 * 289.23624 * 21 20 19 33 33 H 1.09007 * 109.46261 * 169.28116 * 21 20 19 34 34 H 1.09004 * 109.42849 * 170.04179 * 22 21 20 35 35 H 1.09003 * 109.38623 * 50.17754 * 22 21 20 36 36 H 1.09004 * 109.69668 * 282.69276 * 23 18 17 37 37 H 1.09001 * 109.70076 * 43.24838 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0184 -1.2437 0.3847 9 7 1.4168 -2.3352 -0.4895 10 6 0.1154 -2.2507 -1.1568 11 6 -0.9832 -2.3768 -0.1330 12 8 -0.7073 -2.5218 1.0344 13 8 -2.2682 -2.3279 -0.5178 14 6 2.0833 -3.6318 -0.3454 15 6 1.6599 -4.2730 0.9509 16 7 2.2347 -4.1433 2.1176 17 8 1.6570 -4.7798 2.9758 18 6 0.6096 -5.4300 2.4723 19 6 0.5693 -5.1290 1.1517 20 6 -0.4556 -5.6458 0.1849 21 6 -1.1626 -6.8462 0.8305 22 6 -1.6103 -6.4755 2.2469 23 6 -0.3834 -6.3312 3.1569 24 1 -0.4850 0.8401 0.0004 25 1 0.0295 -1.2906 -1.6656 26 1 0.0275 -3.0570 -1.8851 27 1 -2.9375 -2.4137 0.1748 28 1 3.1637 -3.4867 -0.3431 29 1 1.8053 -4.2778 -1.1781 30 1 0.0339 -5.9596 -0.7370 31 1 -1.1833 -4.8638 -0.0324 32 1 -0.4752 -7.6909 0.8762 33 1 -2.0333 -7.1187 0.2340 34 1 -2.2616 -7.2574 2.6376 35 1 -2.1541 -5.5312 2.2190 36 1 0.0649 -7.3103 3.3263 37 1 -0.6808 -5.8936 4.1098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067637.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:01 Heat of formation + Delta-G solvation = -31.811744 kcal Electronic energy + Delta-G solvation = -23605.029758 eV Core-core repulsion = 20157.461472 eV Total energy + Delta-G solvation = -3447.568286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.61760 -40.49117 -38.45779 -37.75815 -36.15369 -34.95053 -33.01802 -31.64099 -31.07767 -29.50759 -28.12108 -25.24051 -24.51124 -23.50494 -22.16758 -21.55520 -20.05818 -18.90852 -18.39983 -18.38213 -17.90296 -17.10096 -16.84630 -16.16310 -15.90888 -15.40990 -15.17053 -14.86201 -14.72005 -14.62929 -14.00827 -13.98929 -13.53090 -13.32303 -13.14364 -12.97292 -12.75388 -12.47430 -12.15230 -12.07140 -11.86966 -11.84019 -11.70538 -11.64801 -11.41472 -11.03971 -10.71389 -10.49150 -9.72234 -9.19264 -8.04779 -5.31718 0.79047 1.42771 1.44115 1.51914 1.58729 2.16853 2.41409 2.45468 2.82932 3.16524 3.58389 3.60253 3.77450 3.92864 3.99415 4.16186 4.29848 4.45866 4.54590 4.57027 4.65191 4.71445 4.80416 4.89127 4.99473 5.03322 5.14835 5.17819 5.22558 5.26907 5.28878 5.44286 5.54847 5.57071 6.10967 6.24359 6.95551 7.59621 7.63900 7.83339 8.04439 9.03998 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022428 B = 0.007149 C = 0.006250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.161481 B = 3915.680109 C = 4478.894204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.046 4.046 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.302 1.302 6 H -0.281 1.281 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.565 5.565 10 C 0.186 3.814 11 C 0.486 3.514 12 O -0.542 6.542 13 O -0.538 6.538 14 C 0.209 3.791 15 C 0.020 3.980 16 N -0.411 5.411 17 O 0.071 5.929 18 C -0.059 4.059 19 C -0.190 4.190 20 C -0.043 4.043 21 C -0.112 4.112 22 C -0.112 4.112 23 C -0.030 4.030 24 H 0.251 0.749 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.395 0.605 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.045 0.955 36 H 0.115 0.885 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.490 -15.311 -1.605 16.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.241 4.241 3 Si 0.800 3.200 4 H -0.199 1.199 5 H -0.229 1.229 6 H -0.207 1.207 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.285 5.285 10 C 0.058 3.942 11 C 0.327 3.673 12 O -0.429 6.429 13 O -0.350 6.350 14 C 0.082 3.918 15 C -0.140 4.140 16 N -0.122 5.122 17 O 0.012 5.988 18 C -0.124 4.124 19 C -0.194 4.194 20 C -0.081 4.081 21 C -0.149 4.149 22 C -0.150 4.150 23 C -0.068 4.068 24 H 0.061 0.939 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.252 0.748 28 H 0.084 0.916 29 H 0.121 0.879 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.129 0.871 35 H 0.064 0.936 36 H 0.133 0.867 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.103 -14.507 -1.148 15.120 hybrid contribution -0.576 1.408 0.766 1.703 sum -4.680 -13.099 -0.383 13.915 Atomic orbital electron populations 1.69930 1.06061 1.25734 1.55384 1.25409 0.96049 1.01006 1.01587 0.85206 0.77555 0.79332 0.77913 1.19871 1.22888 1.20660 1.19472 0.96443 0.86148 1.36352 0.91276 1.44520 1.17401 1.02384 1.64196 1.20536 0.80372 1.02574 0.90751 1.25002 0.82195 0.69036 0.91069 1.90543 1.83618 1.47098 1.21685 1.84559 1.18296 1.86477 1.45637 1.19675 0.97188 0.85569 0.89329 1.24599 0.95384 0.97026 0.96980 1.74101 1.22080 1.15876 1.00155 1.84570 1.33847 1.46348 1.34061 1.24816 0.93248 0.99985 0.94321 1.20786 0.99954 1.02517 0.96109 1.20025 0.94102 0.97795 0.96176 1.21650 1.01017 0.96401 0.95829 1.21626 0.95860 1.02469 0.95003 1.20384 0.91149 0.96734 0.98510 0.93942 0.88875 0.89168 0.74755 0.91629 0.87946 0.89553 0.92760 0.90225 0.88937 0.87085 0.93611 0.86712 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.93 8.79 21.65 0.19 -52.74 16 2 C -0.05 -2.54 4.94 84.86 0.42 -2.13 16 3 Si 0.97 46.02 29.62 68.60 2.03 48.06 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 6 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 7 C -0.25 -14.14 9.70 84.03 0.82 -13.32 16 8 H 0.07 3.95 7.93 -2.91 -0.02 3.93 16 9 N -0.57 -27.50 2.05 -710.71 -1.46 -28.96 16 10 C 0.19 8.39 5.60 85.63 0.48 8.87 16 11 C 0.49 22.54 4.64 71.24 0.33 22.87 16 12 O -0.54 -29.13 14.39 21.97 0.32 -28.82 16 13 O -0.54 -20.99 13.42 -51.40 -0.69 -21.68 16 14 C 0.21 8.71 6.28 85.63 0.54 9.25 16 15 C 0.02 0.89 5.93 43.17 0.26 1.15 16 16 N -0.41 -19.72 12.10 -48.61 -0.59 -20.31 16 17 O 0.07 3.06 11.20 78.84 0.88 3.94 16 18 C -0.06 -2.10 7.39 25.01 0.18 -1.91 16 19 C -0.19 -6.97 4.76 -20.24 -0.10 -7.07 16 20 C -0.04 -1.22 6.28 29.83 0.19 -1.04 16 21 C -0.11 -2.17 5.91 30.81 0.18 -1.98 16 22 C -0.11 -2.21 5.88 30.77 0.18 -2.03 16 23 C -0.03 -0.69 6.31 29.95 0.19 -0.50 16 24 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 25 H 0.09 4.63 6.31 -2.39 -0.02 4.62 16 26 H 0.09 3.26 7.87 -2.38 -0.02 3.24 16 27 H 0.40 12.47 9.10 -74.06 -0.67 11.80 16 28 H 0.07 2.73 8.03 -2.39 -0.02 2.72 16 29 H 0.10 3.40 7.88 -2.39 -0.02 3.38 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.05 1.75 6.24 -2.39 -0.01 1.73 16 32 H 0.08 1.34 8.12 -2.38 -0.02 1.32 16 33 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.04 1.14 8.12 -2.39 -0.02 1.12 16 36 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -75.14 305.15 4.78 -70.36 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.43 Total: 17.98 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 3.67 Total: 12.16 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -1.86 Total: -102.00 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: 0.51 Total: -46.55 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.06 kcal Total: -75.14 4.78 -70.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067637.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.550 kcal (2) G-P(sol) polarization free energy of solvation -75.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds