Wall clock time and date at job start Tue Mar 31 2020 01:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00238 * 2 1 4 4 H 1.48496 * 109.47491 * 240.00445 * 3 2 1 5 5 H 1.48505 * 109.46754 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47188 * 119.99676 * 3 2 1 7 7 C 1.37875 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00499 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00016 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47338 * 180.02562 * 9 7 2 11 11 C 1.34967 * 125.97867 * 124.99600 * 10 9 7 12 12 C 1.35241 * 107.86070 * 179.97438 * 11 10 9 13 13 C 1.40413 * 107.86837 * 0.24488 * 12 11 10 14 14 N 1.40141 * 125.97370 * 179.75355 * 13 12 11 15 15 C 1.34780 * 119.99589 * 174.94977 * 14 13 12 16 16 S 1.71199 * 120.00522 * 5.10628 * 15 14 13 17 17 N 1.34787 * 119.99544 * 185.11086 * 15 14 13 18 18 C 1.46493 * 119.99737 * 179.97438 * 17 15 14 19 19 C 1.53002 * 109.47207 * 180.02562 * 18 17 15 20 20 C 1.52996 * 117.49767 * 243.62539 * 19 18 17 21 21 C 1.52998 * 117.50224 * 175.00104 * 19 18 17 22 22 N 1.31225 * 108.04910 * 359.59186 * 13 12 11 23 23 H 0.96994 * 120.00017 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47439 * 59.99646 * 9 7 2 25 25 H 1.09003 * 109.47208 * 299.99616 * 9 7 2 26 26 H 1.07995 * 126.06800 * 359.93006 * 11 10 9 27 27 H 1.08002 * 126.06453 * 179.97438 * 12 11 10 28 28 H 0.96995 * 120.00437 * 354.94467 * 14 13 12 29 29 H 0.96997 * 120.00022 * 359.97438 * 17 15 14 30 30 H 1.09009 * 109.47426 * 299.99997 * 18 17 15 31 31 H 1.09001 * 109.47545 * 60.00199 * 18 17 15 32 32 H 1.09004 * 115.54711 * 29.32348 * 19 18 17 33 33 H 1.09001 * 117.50275 * 359.97438 * 20 19 18 34 34 H 1.09005 * 117.50282 * 145.01578 * 20 19 18 35 35 H 1.09003 * 117.49990 * 214.97590 * 21 19 18 36 36 H 1.09001 * 117.49541 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.2415 -4.6220 0.8970 12 6 3.2600 -5.4427 0.5533 13 6 3.8723 -4.9125 -0.5937 14 7 4.9723 -5.4602 -1.2674 15 6 5.4017 -4.9059 -2.4185 16 16 4.6887 -3.4580 -2.9897 17 7 6.3925 -5.4916 -3.1200 18 6 6.8588 -4.8895 -4.3713 19 6 7.9800 -5.7463 -4.9628 20 6 9.3668 -5.1112 -5.0814 21 6 8.5241 -5.3480 -6.3362 22 7 3.2323 -3.8162 -0.9263 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 1.5773 -4.7509 1.7387 27 1 3.5533 -6.3436 1.0718 28 1 5.4246 -6.2381 -0.9054 29 1 6.7966 -6.3118 -2.7962 30 1 6.0315 -4.8354 -5.0791 31 1 7.2342 -3.8854 -4.1737 32 1 7.9315 -6.8100 -4.7298 33 1 9.4805 -4.0828 -4.7384 34 1 10.2312 -5.7570 -4.9263 35 1 8.8339 -6.1496 -7.0067 36 1 8.0835 -4.4752 -6.8182 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849257212.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:18 Heat of formation + Delta-G solvation = 112.075147 kcal Electronic energy + Delta-G solvation = -18706.718367 eV Core-core repulsion = 15740.435106 eV Total energy + Delta-G solvation = -2966.283260 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.98696 -40.08937 -38.35367 -36.08512 -35.19501 -32.69594 -30.79289 -29.14095 -27.94288 -25.35793 -24.59331 -23.24334 -22.38458 -22.13048 -21.20906 -19.17208 -18.70537 -18.50024 -17.48432 -16.80477 -16.63903 -16.38602 -16.02133 -15.55890 -15.21054 -14.92839 -14.46585 -14.44269 -13.94617 -13.80832 -13.32572 -12.84588 -12.69347 -12.50430 -12.37890 -12.21712 -12.07987 -11.81779 -11.45506 -11.36400 -11.26854 -10.80029 -10.66156 -9.63590 -9.29369 -8.87415 -8.28373 -8.06089 -6.39378 0.13990 0.86640 1.25150 1.34321 1.39318 1.41729 1.50186 2.11238 2.18303 2.37829 2.60650 2.86776 3.03268 3.61401 3.94696 3.97199 4.04449 4.17377 4.26638 4.56295 4.65761 4.71018 4.81662 4.83633 4.94530 5.03399 5.06393 5.10246 5.15876 5.26559 5.33625 5.62835 5.78176 5.94608 6.11154 6.33371 6.42064 6.74256 7.24446 7.29206 8.79388 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.018926 B = 0.004225 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.127397 B = 6624.937514 C = 7786.062166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.018 3.982 3 Si 0.964 3.036 4 H -0.285 1.285 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.535 4.535 8 H 0.046 0.954 9 C 0.277 3.723 10 N -0.366 5.366 11 C 0.050 3.950 12 C -0.284 4.284 13 C 0.227 3.773 14 N -0.567 5.567 15 C 0.559 3.441 16 S -0.661 6.661 17 N -0.650 5.650 18 C 0.158 3.842 19 C -0.171 4.171 20 C -0.175 4.175 21 C -0.166 4.166 22 N -0.244 5.244 23 H 0.271 0.729 24 H 0.010 0.990 25 H 0.057 0.943 26 H 0.199 0.801 27 H 0.187 0.813 28 H 0.434 0.566 29 H 0.420 0.580 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.133 0.867 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.441 -18.912 -4.385 26.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.182 4.182 3 Si 0.789 3.211 4 H -0.211 1.211 5 H -0.193 1.193 6 H -0.190 1.190 7 C -0.574 4.574 8 H 0.064 0.936 9 C 0.157 3.843 10 N -0.148 5.148 11 C -0.098 4.098 12 C -0.316 4.316 13 C -0.030 4.030 14 N -0.197 5.197 15 C 0.197 3.803 16 S -0.535 6.535 17 N -0.282 5.282 18 C 0.035 3.965 19 C -0.189 4.189 20 C -0.212 4.212 21 C -0.204 4.204 22 N -0.073 5.073 23 H 0.080 0.920 24 H 0.028 0.972 25 H 0.075 0.925 26 H 0.216 0.784 27 H 0.204 0.796 28 H 0.277 0.723 29 H 0.261 0.739 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.151 0.849 33 H 0.107 0.893 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 16.654 -16.712 -5.679 24.267 hybrid contribution 0.725 -0.792 0.971 1.448 sum 17.379 -17.504 -4.707 25.111 Atomic orbital electron populations 1.69981 1.06992 1.28525 1.50723 1.25659 0.95825 1.02461 0.94250 0.85514 0.78418 0.78513 0.78648 1.21084 1.19325 1.19010 1.21344 0.93123 0.91259 1.51634 0.93610 1.19140 0.85866 0.81971 0.97358 1.49945 1.24729 1.19833 1.20271 1.23175 1.00588 0.89117 0.96911 1.21140 1.02368 1.07087 1.01018 1.19585 0.92030 0.95707 0.95720 1.41253 1.28162 1.30942 1.19304 1.21798 0.84504 0.90663 0.83288 1.94158 1.67148 1.15584 1.76633 1.44717 1.32954 1.27241 1.23262 1.21249 0.96549 0.96381 0.82369 1.22381 0.94019 1.00305 1.02219 1.23183 0.94012 1.02140 1.01837 1.23060 1.02848 1.04059 0.90417 1.80018 1.00906 1.15252 1.11086 0.92005 0.97170 0.92478 0.78442 0.79627 0.72283 0.73936 0.90807 0.91255 0.84878 0.89308 0.86862 0.86628 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.68 13.29 21.45 0.28 -55.40 16 2 C 0.02 1.05 5.46 84.65 0.46 1.52 16 3 Si 0.96 47.73 29.54 68.60 2.03 49.76 16 4 H -0.28 -14.59 7.11 99.48 0.71 -13.88 16 5 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.54 -32.76 9.24 25.60 0.24 -32.53 16 8 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 9 C 0.28 15.30 6.26 85.63 0.54 15.84 16 10 N -0.37 -17.68 3.67 -351.83 -1.29 -18.97 16 11 C 0.05 1.81 11.44 83.52 0.96 2.76 16 12 C -0.28 -8.66 10.83 22.11 0.24 -8.42 16 13 C 0.23 8.42 7.76 133.33 1.04 9.45 16 14 N -0.57 -15.10 5.45 -194.00 -1.06 -16.16 16 15 C 0.56 16.96 7.95 179.05 1.42 18.39 16 16 S -0.66 -30.91 25.81 -56.49 -1.46 -32.36 16 17 N -0.65 -12.02 5.56 -350.16 -1.95 -13.97 16 18 C 0.16 3.04 5.41 86.38 0.47 3.50 16 19 C -0.17 -1.89 5.85 -10.80 -0.06 -1.96 16 20 C -0.17 -1.85 10.18 30.59 0.31 -1.53 16 21 C -0.17 -1.79 10.25 30.59 0.31 -1.47 16 22 N -0.24 -12.06 9.05 -54.45 -0.49 -12.56 16 23 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 24 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 3.02 8.07 -2.39 -0.02 3.00 16 26 H 0.20 5.43 8.06 -2.91 -0.02 5.41 16 27 H 0.19 3.65 8.06 -2.91 -0.02 3.63 16 28 H 0.43 6.31 8.84 -92.71 -0.82 5.49 16 29 H 0.42 3.74 8.42 -92.71 -0.78 2.96 16 30 H 0.07 1.74 7.99 -2.38 -0.02 1.72 16 31 H 0.07 1.66 7.73 -2.39 -0.02 1.64 16 32 H 0.13 0.87 8.04 -2.39 -0.02 0.86 16 33 H 0.09 1.16 8.03 -2.39 -0.02 1.14 16 34 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -86.33 326.23 1.49 -84.84 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -0.49 Total: 9.28 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 5.92 Total: 5.54 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -4.50 Total: -117.05 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Atomic # 16 Polarization: -30.91 SS G_CDS: -1.46 Total: -32.36 kcal Total: -86.33 1.49 -84.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849257212.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.913 kcal (2) G-P(sol) polarization free energy of solvation -86.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds