Wall clock time and date at job start Tue Mar 31 2020 01:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99616 * 2 1 4 4 H 1.48498 * 109.46991 * 239.99826 * 3 2 1 5 5 H 1.48497 * 109.47469 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46715 * 120.00407 * 3 2 1 7 7 C 1.37875 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99999 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47263 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47263 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99854 * 359.72154 * 11 10 9 13 13 O 1.34234 * 119.99997 * 179.97438 * 11 10 9 14 14 C 1.45199 * 116.99947 * 179.72219 * 13 11 10 15 15 C 1.50697 * 109.46937 * 179.97438 * 14 13 11 16 16 N 1.31131 * 126.54723 * 89.71556 * 15 14 13 17 17 C 1.34502 * 105.61434 * 179.91320 * 16 15 14 18 18 C 1.50698 * 126.28941 * 180.12445 * 17 16 15 19 19 C 1.53778 * 113.61364 * 219.37795 * 18 17 16 20 20 C 1.53957 * 87.02062 * 220.05100 * 19 18 17 21 21 C 1.53774 * 87.10928 * 25.36275 * 20 19 18 22 22 N 1.29948 * 107.42143 * 0.35069 * 17 16 15 23 23 O 1.21302 * 110.25486 * 359.77996 * 22 17 16 24 24 H 0.97000 * 120.00437 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47201 * 59.99291 * 9 7 2 26 26 H 1.09001 * 109.46880 * 299.99708 * 9 7 2 27 27 H 1.09001 * 109.47602 * 59.99522 * 10 9 7 28 28 H 1.09001 * 109.46922 * 299.99667 * 10 9 7 29 29 H 1.08997 * 109.46967 * 299.99772 * 14 13 11 30 30 H 1.09002 * 109.46640 * 59.99976 * 14 13 11 31 31 H 1.08998 * 112.85151 * 350.57565 * 18 17 16 32 32 H 1.09005 * 113.62070 * 334.56856 * 19 18 17 33 33 H 1.09004 * 113.61704 * 105.47409 * 19 18 17 34 34 H 1.09009 * 113.53226 * 270.81071 * 20 19 18 35 35 H 1.08995 * 113.74524 * 139.95059 * 20 19 18 36 36 H 1.08998 * 113.61713 * 220.09214 * 21 20 19 37 37 H 1.09001 * 113.61628 * 89.19243 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0018 11 6 1.4918 -4.9671 0.0025 12 8 0.2836 -4.9671 0.0070 13 8 2.1630 -6.1296 0.0031 14 6 1.3722 -7.3474 0.0100 15 6 2.2902 -8.5424 0.0090 16 7 2.7748 -9.1557 1.0619 17 6 3.5345 -10.1558 0.5807 18 6 4.3105 -11.1580 1.3957 19 6 5.6891 -11.4975 0.8047 20 6 5.4127 -12.9577 1.2070 21 6 3.9158 -12.6177 1.1157 22 7 3.4802 -10.0962 -0.7163 23 8 2.7706 -9.1762 -1.0651 24 1 -0.4851 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8713 -3.6039 0.8922 28 1 2.8725 -3.6047 -0.8877 29 1 0.7471 -7.3696 0.9026 30 1 0.7397 -7.3748 -0.8774 31 1 4.3395 -10.9094 2.4566 32 1 5.7516 -11.3459 -0.2729 33 1 6.5198 -11.0444 1.3458 34 1 5.7444 -13.2013 2.2163 35 1 5.7409 -13.6866 0.4661 36 1 3.3168 -13.0675 1.9075 37 1 3.4924 -12.7729 0.1233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869523204.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:30 Heat of formation + Delta-G solvation = -7.043763 kcal Electronic energy + Delta-G solvation = -20561.527783 eV Core-core repulsion = 17115.033517 eV Total energy + Delta-G solvation = -3446.494266 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.86206 -40.20371 -39.28316 -36.62091 -35.78720 -33.65834 -33.07208 -31.22934 -28.53453 -27.27493 -26.11471 -25.91074 -23.82422 -22.54470 -21.95880 -20.04424 -19.64439 -18.38623 -18.06757 -17.43684 -16.63236 -16.35113 -16.04411 -15.94018 -15.44687 -14.50478 -14.30815 -13.89524 -13.39403 -13.27402 -12.92626 -12.78772 -12.64194 -12.31486 -12.28927 -11.78333 -11.39984 -11.39552 -11.28210 -10.97390 -10.96543 -10.92064 -10.73098 -10.69929 -10.27838 -10.10633 -10.02447 -9.63638 -9.24002 -8.40810 -6.04837 -4.10077 0.70893 1.81275 2.33517 2.62118 3.06691 3.31345 3.35146 3.36582 3.39788 3.69210 4.14765 4.18088 4.34944 4.39812 4.41905 4.68525 4.88586 4.98400 5.18197 5.27653 5.29908 5.30714 5.36779 5.41331 5.46310 5.49158 5.61171 5.71021 5.97541 6.03350 6.09918 6.40767 6.75534 7.61240 7.67056 7.87462 7.93241 8.07476 8.30372 8.96475 9.54267 11.06024 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.042059 B = 0.002501 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.574403 B =11194.098032 C =11571.175972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.101 4.101 11 C 0.464 3.536 12 O -0.497 6.497 13 O -0.361 6.361 14 C 0.158 3.842 15 C 0.187 3.813 16 N -0.459 5.459 17 C 0.180 3.820 18 C -0.028 4.028 19 C -0.129 4.129 20 C -0.138 4.138 21 C -0.127 4.127 22 N -0.376 5.376 23 O 0.089 5.911 24 H 0.263 0.737 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.325 -24.301 1.534 25.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.569 4.569 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.139 4.139 11 C 0.308 3.692 12 O -0.382 6.382 13 O -0.278 6.278 14 C 0.082 3.918 15 C -0.034 4.034 16 N -0.194 5.194 17 C -0.092 4.092 18 C -0.047 4.047 19 C -0.167 4.167 20 C -0.176 4.176 21 C -0.166 4.166 22 N -0.081 5.081 23 O 0.029 5.971 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.136 0.864 30 H 0.127 0.873 31 H 0.140 0.860 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.253 -24.807 1.440 26.183 hybrid contribution 0.156 1.041 -0.045 1.054 sum 8.409 -23.766 1.395 25.248 Atomic orbital electron populations 1.69974 1.06086 1.26962 1.49696 1.25015 0.94872 0.99353 0.95042 0.86589 0.79505 0.82823 0.78666 1.20150 1.21245 1.20143 1.21094 0.93064 0.90565 1.52131 0.92310 1.19045 0.93196 0.89137 0.99048 1.21847 1.00812 0.86832 1.04373 1.24944 0.88073 0.84793 0.71412 1.90670 1.15630 1.87158 1.44790 1.86635 1.41702 1.14055 1.85424 1.20897 0.87996 0.76413 1.06518 1.28172 0.97131 0.97304 0.80838 1.71933 1.11636 1.07071 1.28771 1.25712 0.98517 0.96696 0.88289 1.21110 0.94579 0.90318 0.98732 1.23039 0.95242 0.96488 1.01975 1.22826 0.95748 0.96638 1.02349 1.22987 0.97460 0.93215 1.02895 1.74562 1.11428 1.06456 1.15700 1.85331 1.44828 1.31417 1.35540 0.92733 0.95433 0.95438 0.88602 0.88611 0.86421 0.87265 0.85998 0.89223 0.90430 0.89527 0.90676 0.90437 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.84 4.26 -27.89 -0.12 0.72 16 10 C -0.10 -1.96 5.75 -27.89 -0.16 -2.12 16 11 C 0.46 8.44 7.96 36.01 0.29 8.72 16 12 O -0.50 -10.33 15.73 -18.75 -0.29 -10.62 16 13 O -0.36 -5.54 10.20 -39.27 -0.40 -5.94 16 14 C 0.16 1.93 6.09 36.00 0.22 2.15 16 15 C 0.19 2.37 8.15 -13.06 -0.11 2.26 16 16 N -0.46 -6.16 11.55 -9.86 -0.11 -6.28 16 17 C 0.18 2.18 7.26 -156.36 -1.14 1.05 16 18 C -0.03 -0.24 4.28 -90.96 -0.39 -0.63 16 19 C -0.13 -0.96 7.63 -25.83 -0.20 -1.16 16 20 C -0.14 -0.79 8.09 -25.83 -0.21 -1.00 16 21 C -0.13 -0.90 7.63 -25.92 -0.20 -1.09 16 22 N -0.38 -4.82 11.80 30.91 0.36 -4.46 16 23 O 0.09 1.14 11.31 18.09 0.20 1.35 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 26 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 27 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 28 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 29 H 0.12 1.34 8.13 -51.93 -0.42 0.91 16 30 H 0.11 1.12 8.13 -51.93 -0.42 0.70 16 31 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.09 0.77 7.81 -51.93 -0.41 0.37 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.69 8.09 -51.93 -0.42 0.26 16 LS Contribution 327.83 15.07 4.94 4.94 Total: -1.00 -31.98 327.83 -7.02 -39.00 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -5.01 Total: -4.03 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -2.42 Total: -4.32 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.99 Total: -36.50 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.49 Total: -15.21 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.98 -7.02 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869523204.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.956 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds