Wall clock time and date at job start Tue Mar 31 2020 01:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99616 * 2 1 4 4 H 1.48498 * 109.46991 * 239.99826 * 3 2 1 5 5 H 1.48497 * 109.47469 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46715 * 120.00407 * 3 2 1 7 7 C 1.37875 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99999 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00024 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47263 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47263 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99854 * 359.72154 * 11 10 9 13 13 O 1.34234 * 119.99997 * 179.97438 * 11 10 9 14 14 C 1.45199 * 116.99947 * 179.72219 * 13 11 10 15 15 C 1.50697 * 109.46937 * 179.97438 * 14 13 11 16 16 N 1.31131 * 126.54723 * 89.71556 * 15 14 13 17 17 C 1.34502 * 105.61434 * 179.91320 * 16 15 14 18 18 C 1.50698 * 126.28941 * 180.12445 * 17 16 15 19 19 C 1.53778 * 113.61364 * 219.37795 * 18 17 16 20 20 C 1.53957 * 87.02062 * 220.05100 * 19 18 17 21 21 C 1.53774 * 87.10928 * 25.36275 * 20 19 18 22 22 N 1.29948 * 107.42143 * 0.35069 * 17 16 15 23 23 O 1.21302 * 110.25486 * 359.77996 * 22 17 16 24 24 H 0.97000 * 120.00437 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47201 * 59.99291 * 9 7 2 26 26 H 1.09001 * 109.46880 * 299.99708 * 9 7 2 27 27 H 1.09001 * 109.47602 * 59.99522 * 10 9 7 28 28 H 1.09001 * 109.46922 * 299.99667 * 10 9 7 29 29 H 1.08997 * 109.46967 * 299.99772 * 14 13 11 30 30 H 1.09002 * 109.46640 * 59.99976 * 14 13 11 31 31 H 1.08998 * 112.85151 * 350.57565 * 18 17 16 32 32 H 1.09005 * 113.62070 * 334.56856 * 19 18 17 33 33 H 1.09004 * 113.61704 * 105.47409 * 19 18 17 34 34 H 1.09009 * 113.53226 * 270.81071 * 20 19 18 35 35 H 1.08995 * 113.74524 * 139.95059 * 20 19 18 36 36 H 1.08998 * 113.61713 * 220.09214 * 21 20 19 37 37 H 1.09001 * 113.61628 * 89.19243 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0018 11 6 1.4918 -4.9671 0.0025 12 8 0.2836 -4.9671 0.0070 13 8 2.1630 -6.1296 0.0031 14 6 1.3722 -7.3474 0.0100 15 6 2.2902 -8.5424 0.0090 16 7 2.7748 -9.1557 1.0619 17 6 3.5345 -10.1558 0.5807 18 6 4.3105 -11.1580 1.3957 19 6 5.6891 -11.4975 0.8047 20 6 5.4127 -12.9577 1.2070 21 6 3.9158 -12.6177 1.1157 22 7 3.4802 -10.0962 -0.7163 23 8 2.7706 -9.1762 -1.0651 24 1 -0.4851 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8713 -3.6039 0.8922 28 1 2.8725 -3.6047 -0.8877 29 1 0.7471 -7.3696 0.9026 30 1 0.7397 -7.3748 -0.8774 31 1 4.3395 -10.9094 2.4566 32 1 5.7516 -11.3459 -0.2729 33 1 6.5198 -11.0444 1.3458 34 1 5.7444 -13.2013 2.2163 35 1 5.7409 -13.6866 0.4661 36 1 3.3168 -13.0675 1.9075 37 1 3.4924 -12.7729 0.1233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869523204.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:29 Heat of formation + Delta-G solvation = -26.905725 kcal Electronic energy + Delta-G solvation = -20562.389063 eV Core-core repulsion = 17115.033517 eV Total energy + Delta-G solvation = -3447.355545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.84045 -41.61946 -39.89097 -37.98642 -36.78152 -35.63919 -34.09914 -33.11253 -29.71288 -27.98915 -27.75849 -26.66946 -24.84604 -24.15792 -22.94193 -21.61188 -20.29167 -19.48458 -19.05985 -18.95413 -18.13435 -17.79693 -17.33489 -16.73188 -16.47095 -16.21208 -15.61417 -15.22367 -14.36039 -14.23361 -14.05546 -14.01124 -13.87481 -13.50869 -13.42609 -13.19542 -12.78906 -12.66467 -12.53737 -12.37534 -12.05204 -11.96871 -11.90185 -11.78102 -11.67385 -11.45939 -11.44440 -11.29325 -10.99162 -10.54662 -8.18192 -6.31310 -0.31277 0.83234 1.16152 1.30034 1.45434 1.48574 1.56274 1.92863 2.40624 2.46468 2.81551 3.15874 3.53119 3.57051 3.62569 3.79305 3.84712 3.88118 4.03379 4.17601 4.45866 4.46705 4.48880 4.63922 4.67142 4.70907 4.83402 4.88070 4.94862 5.04298 5.08090 5.18891 5.44296 5.49526 5.58594 5.82912 6.14995 6.68293 6.86915 6.90140 7.38691 8.93904 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.042059 B = 0.002501 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.574403 B =11194.098032 C =11571.175972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.076 0.924 9 C 0.037 3.963 10 C -0.094 4.094 11 C 0.478 3.522 12 O -0.529 6.529 13 O -0.356 6.356 14 C 0.156 3.844 15 C 0.188 3.812 16 N -0.476 5.476 17 C 0.180 3.820 18 C -0.038 4.038 19 C -0.130 4.130 20 C -0.125 4.125 21 C -0.125 4.125 22 N -0.388 5.388 23 O 0.084 5.916 24 H 0.264 0.736 25 H -0.005 1.005 26 H -0.006 1.006 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.340 -25.106 1.987 27.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.094 0.906 9 C 0.000 4.000 10 C -0.131 4.131 11 C 0.323 3.677 12 O -0.417 6.417 13 O -0.272 6.272 14 C 0.081 3.919 15 C -0.033 4.033 16 N -0.212 5.212 17 C -0.092 4.092 18 C -0.058 4.058 19 C -0.169 4.169 20 C -0.162 4.162 21 C -0.163 4.163 22 N -0.095 5.095 23 O 0.025 5.975 24 H 0.072 0.928 25 H 0.013 0.987 26 H 0.012 0.988 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.298 -25.636 1.883 27.691 hybrid contribution -0.471 1.177 -0.179 1.280 sum 9.827 -24.459 1.704 26.414 Atomic orbital electron populations 1.70135 1.08086 1.27961 1.51175 1.26050 0.95722 1.03698 0.94615 0.85409 0.78082 0.77588 0.79396 1.18845 1.21396 1.18866 1.21609 0.94091 0.91369 1.51177 0.90570 1.18821 0.93685 0.91615 0.95868 1.21567 0.99479 0.85569 1.06487 1.24460 0.87241 0.85335 0.70698 1.90669 1.16900 1.87730 1.46397 1.86548 1.41642 1.14264 1.84782 1.21175 0.87736 0.74755 1.08228 1.28170 0.97028 0.97279 0.80849 1.71955 1.12233 1.07764 1.29250 1.26346 0.97952 0.96616 0.88312 1.21468 0.95086 0.90373 0.98889 1.23042 0.94745 0.97984 1.01100 1.22814 0.94310 0.95492 1.03567 1.22981 0.98734 0.92003 1.02627 1.74564 1.11914 1.06783 1.16248 1.85317 1.44975 1.31569 1.35601 0.92763 0.98674 0.98793 0.86545 0.86367 0.85374 0.85142 0.84987 0.90719 0.89544 0.87692 0.89947 0.89194 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 3 Si 0.97 43.05 29.54 68.60 2.03 45.08 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.54 -29.62 9.11 25.60 0.23 -29.39 16 8 H 0.08 3.78 7.74 -2.92 -0.02 3.76 16 9 C 0.04 1.94 4.26 29.85 0.13 2.06 16 10 C -0.09 -3.54 5.75 29.85 0.17 -3.37 16 11 C 0.48 17.05 7.96 71.24 0.57 17.62 16 12 O -0.53 -22.14 15.73 21.98 0.35 -21.79 16 13 O -0.36 -10.42 10.20 -51.46 -0.53 -10.95 16 14 C 0.16 3.63 6.09 71.23 0.43 4.07 16 15 C 0.19 4.59 8.15 88.38 0.72 5.31 16 16 N -0.48 -12.35 11.55 -303.16 -3.50 -15.85 16 17 C 0.18 4.21 7.26 138.46 1.01 5.22 16 18 C -0.04 -0.62 4.28 -11.02 -0.05 -0.66 16 19 C -0.13 -1.75 7.63 31.18 0.24 -1.51 16 20 C -0.12 -1.14 8.09 31.18 0.25 -0.88 16 21 C -0.12 -1.56 7.63 31.12 0.24 -1.32 16 22 N -0.39 -9.75 11.80 -60.28 -0.71 -10.46 16 23 O 0.08 2.10 11.31 74.80 0.85 2.94 16 24 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 25 H -0.01 -0.30 8.10 -2.39 -0.02 -0.32 16 26 H -0.01 -0.37 8.10 -2.39 -0.02 -0.39 16 27 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 28 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 29 H 0.13 2.77 8.13 -2.39 -0.02 2.75 16 30 H 0.13 2.51 8.13 -2.39 -0.02 2.49 16 31 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 1.23 7.81 -2.38 -0.02 1.22 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 Total: -1.00 -69.59 327.83 4.24 -65.35 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: 1.08 Total: 4.88 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 4.40 Total: -2.57 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -3.93 Total: -82.95 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: 0.67 Total: -29.79 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -69.59 4.24 -65.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869523204.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.446 kcal (2) G-P(sol) polarization free energy of solvation -69.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds