Wall clock time and date at job start Tue Mar 31 2020 02:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35342 * 127.24715 * 2 1 4 4 N 1.35058 * 107.24367 * 180.11599 * 3 2 1 5 5 C 1.46503 * 124.87686 * 179.83691 * 4 3 2 6 6 C 1.53177 * 109.54345 * 274.72428 * 5 4 3 7 7 C 1.53098 * 109.21356 * 176.87648 * 6 5 4 8 8 O 1.42899 * 109.41440 * 302.35638 * 7 6 5 9 9 C 1.42904 * 114.09711 * 61.16120 * 8 7 6 10 10 C 1.53100 * 109.41581 * 298.84173 * 9 8 7 11 11 N 1.28467 * 110.24688 * 359.57577 * 4 3 2 12 12 C 1.31880 * 110.05736 * 0.26180 * 11 4 3 13 13 C 1.47535 * 126.52513 * 179.97438 * 12 11 4 14 14 O 1.21526 * 119.99912 * 180.02562 * 13 12 11 15 15 O 1.34758 * 120.00249 * 0.02562 * 13 12 11 16 16 C 1.34862 * 117.00263 * 180.02562 * 15 13 12 17 17 H 1.08009 * 119.99731 * 0.02562 * 16 15 13 18 18 C 1.38789 * 120.00426 * 180.02562 * 16 15 13 19 19 N 1.31422 * 120.00408 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99482 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47539 * 90.00075 * 20 18 16 22 22 H 1.48502 * 109.46866 * 209.99675 * 20 18 16 23 23 H 1.48492 * 109.47474 * 329.99703 * 20 18 16 24 24 H 1.08999 * 109.46980 * 270.32662 * 1 2 3 25 25 H 1.09004 * 109.47497 * 30.32890 * 1 2 3 26 26 H 1.09001 * 109.47149 * 150.32616 * 1 2 3 27 27 H 1.07999 * 126.37756 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.61777 * 154.49689 * 5 4 3 29 29 H 1.09002 * 109.52487 * 56.93859 * 6 5 4 30 30 H 1.09004 * 109.52023 * 296.81478 * 6 5 4 31 31 H 1.08999 * 109.47859 * 62.34349 * 7 6 5 32 32 H 1.09000 * 109.47836 * 182.37389 * 7 6 5 33 33 H 1.09002 * 109.48461 * 58.81736 * 9 8 7 34 34 H 1.09002 * 109.48312 * 178.85406 * 9 8 7 35 35 H 1.08992 * 109.52355 * 177.51674 * 10 9 8 36 36 H 1.08999 * 109.51737 * 297.64019 * 10 9 8 37 37 H 0.97003 * 119.99877 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3261 1.0774 0.0000 4 7 3.5952 0.6154 -0.0026 5 6 4.7935 1.4582 -0.0069 6 6 5.1406 1.8481 -1.4470 7 6 6.3464 2.7914 -1.4369 8 8 6.0451 3.9390 -0.6406 9 6 5.7594 3.6411 0.7276 10 6 4.5300 2.7320 0.8045 11 7 3.6007 -0.6693 0.0047 12 6 2.3638 -1.1268 0.0068 13 6 1.9517 -2.5434 0.0142 14 8 0.7714 -2.8328 0.0149 15 8 2.8839 -3.5165 0.0201 16 6 2.4399 -4.7899 0.0262 17 1 1.3789 -4.9918 0.0257 18 6 3.3463 -5.8409 0.0330 19 7 2.9136 -7.0818 0.0394 20 14 5.1813 -5.4916 0.0346 21 1 5.6652 -5.3921 1.4350 22 1 5.8956 -6.5937 -0.6587 23 1 5.4422 -4.2115 -0.6714 24 1 -0.3633 0.0059 1.0276 25 1 -0.3634 0.8870 -0.5189 26 1 -0.3633 -0.8929 -0.5088 27 1 2.0217 2.1135 -0.0004 28 1 5.6272 0.9114 0.4338 29 1 4.2883 2.3513 -1.9036 30 1 5.3836 0.9522 -2.0185 31 1 7.2091 2.2740 -1.0173 32 1 6.5710 3.1051 -2.4564 33 1 6.6144 3.1348 1.1756 34 1 5.5612 4.5671 1.2675 35 1 4.3369 2.4678 1.8442 36 1 3.6652 3.2535 0.3944 37 1 3.5471 -7.8164 0.0446 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869582763.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:43 Heat of formation + Delta-G solvation = -46.153658 kcal Electronic energy + Delta-G solvation = -21882.322156 eV Core-core repulsion = 18434.131958 eV Total energy + Delta-G solvation = -3448.190198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.51994 -39.65786 -38.81770 -35.48934 -34.87927 -32.38970 -32.22721 -31.66220 -30.47057 -27.19135 -26.29834 -24.79522 -24.09718 -22.47257 -21.21567 -19.89316 -19.39524 -17.88956 -17.56542 -16.68087 -16.56767 -16.07167 -15.67552 -15.21724 -15.04781 -14.54229 -14.16931 -13.89774 -13.73018 -13.48321 -12.95568 -12.89203 -12.59509 -12.35793 -12.05023 -11.92772 -11.85789 -11.71858 -11.36557 -11.19156 -10.91633 -10.46031 -10.38809 -10.33058 -10.18179 -9.65127 -9.20860 -8.94515 -8.63623 -8.48085 -6.34437 -4.06333 1.97983 2.36863 2.46011 3.26427 3.29717 3.39318 3.47746 3.97027 4.05415 4.17480 4.22747 4.32152 4.39299 4.53544 4.66129 4.74280 4.88896 5.04886 5.09295 5.18445 5.19135 5.21680 5.28172 5.46013 5.49115 5.57743 5.69839 5.83946 6.04537 6.06027 6.41556 6.48773 6.68171 6.87885 7.00534 7.76495 8.06078 8.22884 8.67314 9.04441 9.76559 10.73446 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.019183 B = 0.004854 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.312898 B = 5766.722586 C = 6941.049900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.148 4.148 3 C -0.030 4.030 4 N -0.286 5.286 5 C 0.151 3.849 6 C -0.168 4.168 7 C 0.066 3.934 8 O -0.381 6.381 9 C 0.066 3.934 10 C -0.166 4.166 11 N -0.248 5.248 12 C 0.031 3.969 13 C 0.491 3.509 14 O -0.528 6.528 15 O -0.235 6.235 16 C -0.376 4.376 17 H 0.112 0.888 18 C 0.068 3.932 19 N -0.871 5.871 20 Si 0.902 3.098 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.256 1.256 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.175 0.825 28 H 0.109 0.891 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 23.545 -0.150 24.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.158 4.158 3 C -0.171 4.171 4 N -0.074 5.074 5 C 0.050 3.950 6 C -0.207 4.207 7 C -0.012 4.012 8 O -0.299 6.299 9 C -0.011 4.011 10 C -0.205 4.205 11 N -0.083 5.083 12 C -0.128 4.128 13 C 0.336 3.664 14 O -0.421 6.421 15 O -0.141 6.141 16 C -0.452 4.452 17 H 0.129 0.871 18 C -0.136 4.136 19 N -0.510 5.510 20 Si 0.727 3.273 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.180 1.180 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.192 0.808 28 H 0.127 0.873 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.572 23.117 -0.225 24.327 hybrid contribution -0.027 -0.152 0.150 0.215 sum 7.545 22.965 -0.076 24.173 Atomic orbital electron populations 1.20157 0.88207 1.02881 1.02194 1.20324 0.97354 0.90195 1.07899 1.22384 0.83943 1.00045 1.10777 1.45474 1.06075 1.03752 1.52096 1.21499 0.85702 0.90212 0.97566 1.22679 1.00729 1.01555 0.95744 1.22593 0.95294 0.86567 0.96698 1.87967 1.89884 1.31562 1.20493 1.22567 0.95296 0.99719 0.83517 1.22649 1.01096 0.95062 1.01657 1.73782 1.23505 0.92603 1.18412 1.21107 0.89036 0.93052 1.09612 1.19022 0.84178 0.83595 0.79582 1.90664 1.18204 1.82740 1.50523 1.83629 1.37939 1.16346 1.76230 1.20728 0.96425 0.76830 1.51175 0.87073 1.24525 1.00048 0.93612 0.95462 1.69601 1.36074 0.98081 1.47276 0.86240 0.83100 0.78853 0.79071 1.19867 1.20796 1.17975 0.91651 0.92413 0.89665 0.80774 0.87269 0.89927 0.89292 0.92380 0.87853 0.92415 0.87791 0.89357 0.89567 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 9.93 36.00 0.36 -0.81 16 2 C -0.15 -2.57 6.25 -104.39 -0.65 -3.22 16 3 C -0.03 -0.41 10.48 -17.16 -0.18 -0.59 16 4 N -0.29 -4.22 3.23 -54.58 -0.18 -4.40 16 5 C 0.15 1.57 3.17 -67.68 -0.21 1.36 16 6 C -0.17 -1.53 5.74 -26.59 -0.15 -1.68 16 7 C 0.07 0.48 6.84 37.21 0.25 0.73 16 8 O -0.38 -3.15 10.77 -35.23 -0.38 -3.53 16 9 C 0.07 0.42 6.84 37.21 0.25 0.67 16 10 C -0.17 -1.23 5.10 -26.52 -0.14 -1.36 16 11 N -0.25 -4.94 11.99 33.40 0.40 -4.54 16 12 C 0.03 0.67 7.17 -82.79 -0.59 0.08 16 13 C 0.49 12.95 7.90 34.52 0.27 13.22 16 14 O -0.53 -14.65 14.36 -19.29 -0.28 -14.92 16 15 O -0.23 -6.77 8.58 -21.73 -0.19 -6.95 16 16 C -0.38 -11.64 10.11 30.94 0.31 -11.33 16 17 H 0.11 3.72 7.09 -52.48 -0.37 3.35 16 18 C 0.07 2.01 5.49 -17.52 -0.10 1.91 16 19 N -0.87 -26.32 13.96 55.49 0.77 -25.55 16 20 Si 0.90 22.50 28.62 -169.99 -4.86 17.63 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.26 -6.42 7.11 56.52 0.40 -6.02 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.08 1.52 6.72 -51.93 -0.35 1.17 16 27 H 0.18 1.64 7.08 -52.49 -0.37 1.27 16 28 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.60 6.91 -51.93 -0.36 0.24 16 37 H 0.28 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -35.73 315.37 -5.34 -41.07 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -4.81 Total: -2.53 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -0.57 Total: -1.03 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 1.00 Total: -34.49 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.84 Total: -25.41 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.86 Total: 17.63 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.73 -5.34 -41.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869582763.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.079 kcal (2) G-P(sol) polarization free energy of solvation -35.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds