Wall clock time and date at job start Tue Mar 31 2020 02:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35342 * 127.24715 * 2 1 4 4 N 1.35058 * 107.24367 * 180.11599 * 3 2 1 5 5 C 1.46503 * 124.87686 * 179.83691 * 4 3 2 6 6 C 1.53177 * 109.54345 * 274.72428 * 5 4 3 7 7 C 1.53098 * 109.21356 * 176.87648 * 6 5 4 8 8 O 1.42899 * 109.41440 * 302.35638 * 7 6 5 9 9 C 1.42904 * 114.09711 * 61.16120 * 8 7 6 10 10 C 1.53100 * 109.41581 * 298.84173 * 9 8 7 11 11 N 1.28467 * 110.24688 * 359.57577 * 4 3 2 12 12 C 1.31880 * 110.05736 * 0.26180 * 11 4 3 13 13 C 1.47535 * 126.52513 * 179.97438 * 12 11 4 14 14 O 1.21526 * 119.99912 * 180.02562 * 13 12 11 15 15 O 1.34758 * 120.00249 * 0.02562 * 13 12 11 16 16 C 1.34862 * 117.00263 * 180.02562 * 15 13 12 17 17 H 1.08009 * 119.99731 * 0.02562 * 16 15 13 18 18 C 1.38789 * 120.00426 * 180.02562 * 16 15 13 19 19 N 1.31422 * 120.00408 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99482 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47539 * 90.00075 * 20 18 16 22 22 H 1.48502 * 109.46866 * 209.99675 * 20 18 16 23 23 H 1.48492 * 109.47474 * 329.99703 * 20 18 16 24 24 H 1.08999 * 109.46980 * 270.32662 * 1 2 3 25 25 H 1.09004 * 109.47497 * 30.32890 * 1 2 3 26 26 H 1.09001 * 109.47149 * 150.32616 * 1 2 3 27 27 H 1.07999 * 126.37756 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.61777 * 154.49689 * 5 4 3 29 29 H 1.09002 * 109.52487 * 56.93859 * 6 5 4 30 30 H 1.09004 * 109.52023 * 296.81478 * 6 5 4 31 31 H 1.08999 * 109.47859 * 62.34349 * 7 6 5 32 32 H 1.09000 * 109.47836 * 182.37389 * 7 6 5 33 33 H 1.09002 * 109.48461 * 58.81736 * 9 8 7 34 34 H 1.09002 * 109.48312 * 178.85406 * 9 8 7 35 35 H 1.08992 * 109.52355 * 177.51674 * 10 9 8 36 36 H 1.08999 * 109.51737 * 297.64019 * 10 9 8 37 37 H 0.97003 * 119.99877 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3261 1.0774 0.0000 4 7 3.5952 0.6154 -0.0026 5 6 4.7935 1.4582 -0.0069 6 6 5.1406 1.8481 -1.4470 7 6 6.3464 2.7914 -1.4369 8 8 6.0451 3.9390 -0.6406 9 6 5.7594 3.6411 0.7276 10 6 4.5300 2.7320 0.8045 11 7 3.6007 -0.6693 0.0047 12 6 2.3638 -1.1268 0.0068 13 6 1.9517 -2.5434 0.0142 14 8 0.7714 -2.8328 0.0149 15 8 2.8839 -3.5165 0.0201 16 6 2.4399 -4.7899 0.0262 17 1 1.3789 -4.9918 0.0257 18 6 3.3463 -5.8409 0.0330 19 7 2.9136 -7.0818 0.0394 20 14 5.1813 -5.4916 0.0346 21 1 5.6652 -5.3921 1.4350 22 1 5.8956 -6.5937 -0.6587 23 1 5.4422 -4.2115 -0.6714 24 1 -0.3633 0.0059 1.0276 25 1 -0.3634 0.8870 -0.5189 26 1 -0.3633 -0.8929 -0.5088 27 1 2.0217 2.1135 -0.0004 28 1 5.6272 0.9114 0.4338 29 1 4.2883 2.3513 -1.9036 30 1 5.3836 0.9522 -2.0185 31 1 7.2091 2.2740 -1.0173 32 1 6.5710 3.1051 -2.4564 33 1 6.6144 3.1348 1.1756 34 1 5.5612 4.5671 1.2675 35 1 4.3369 2.4678 1.8442 36 1 3.6652 3.2535 0.3944 37 1 3.5471 -7.8164 0.0446 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869582763.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:42 Heat of formation + Delta-G solvation = -71.478965 kcal Electronic energy + Delta-G solvation = -21883.420344 eV Core-core repulsion = 18434.131958 eV Total energy + Delta-G solvation = -3449.288386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.83375 -41.03146 -40.21279 -37.49969 -35.94174 -34.56951 -33.55895 -32.25517 -31.70620 -28.44176 -28.08130 -26.26177 -24.68673 -23.84900 -22.30013 -21.24099 -20.80515 -20.14519 -18.86893 -18.18378 -17.43215 -17.05727 -16.95089 -16.68333 -16.26646 -15.96756 -15.76924 -15.01861 -14.78071 -14.75872 -14.39776 -14.10131 -14.08432 -13.78824 -13.42673 -13.35558 -13.07254 -12.63127 -12.48918 -12.40826 -12.38862 -12.00289 -11.93182 -11.76508 -11.51677 -11.26425 -10.88871 -10.73309 -10.31354 -9.78269 -8.61076 -6.45114 0.37146 1.06396 1.25327 1.32377 1.34923 1.50607 2.15320 2.22809 2.38398 2.89448 2.89816 3.18401 3.50548 3.67284 3.76666 3.84289 3.85267 4.17376 4.21643 4.32001 4.45637 4.49560 4.51760 4.60152 4.67536 4.77741 4.87663 4.93359 4.95558 4.99966 5.07994 5.13258 5.34401 5.53253 5.82531 5.87912 6.17602 6.39058 6.74026 6.86372 7.54570 8.51566 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.019183 B = 0.004854 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.312898 B = 5766.722586 C = 6941.049900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.163 4.163 3 C 0.004 3.996 4 N -0.267 5.267 5 C 0.137 3.863 6 C -0.163 4.163 7 C 0.070 3.930 8 O -0.393 6.393 9 C 0.065 3.935 10 C -0.157 4.157 11 N -0.273 5.273 12 C -0.019 4.019 13 C 0.491 3.509 14 O -0.554 6.554 15 O -0.248 6.248 16 C -0.409 4.409 17 H 0.064 0.936 18 C 0.024 3.976 19 N -0.908 5.908 20 Si 0.977 3.023 21 H -0.259 1.259 22 H -0.256 1.256 23 H -0.262 1.262 24 H 0.071 0.929 25 H 0.101 0.899 26 H 0.047 0.953 27 H 0.231 0.769 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.065 0.935 34 H 0.125 0.875 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.722 27.431 0.062 28.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.173 4.173 3 C -0.138 4.138 4 N -0.055 5.055 5 C 0.038 3.962 6 C -0.202 4.202 7 C -0.007 4.007 8 O -0.312 6.312 9 C -0.012 4.012 10 C -0.196 4.196 11 N -0.110 5.110 12 C -0.174 4.174 13 C 0.338 3.662 14 O -0.448 6.448 15 O -0.155 6.155 16 C -0.485 4.485 17 H 0.082 0.918 18 C -0.177 4.177 19 N -0.547 5.547 20 Si 0.797 3.203 21 H -0.184 1.184 22 H -0.180 1.180 23 H -0.186 1.186 24 H 0.089 0.911 25 H 0.119 0.881 26 H 0.066 0.934 27 H 0.247 0.753 28 H 0.125 0.875 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.083 0.917 34 H 0.143 0.857 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.676 26.983 -0.010 28.665 hybrid contribution -0.739 -1.154 0.082 1.373 sum 8.937 25.829 0.073 27.331 Atomic orbital electron populations 1.20166 0.87146 1.03118 1.02697 1.20678 0.98430 0.89633 1.08529 1.23063 0.82431 1.01344 1.07000 1.46030 1.08129 1.02525 1.48860 1.22044 0.84100 0.90818 0.99273 1.22646 1.01801 1.01327 0.94381 1.22625 0.94448 0.86059 0.97592 1.87965 1.89885 1.31905 1.21398 1.22733 0.94993 1.00530 0.82906 1.22674 1.02275 0.93307 1.01344 1.73667 1.22862 0.95349 1.19128 1.20748 0.91281 0.91110 1.14296 1.20026 0.83798 0.85234 0.77139 1.90627 1.19274 1.83729 1.51121 1.83642 1.38443 1.15742 1.77722 1.20444 0.94864 0.78732 1.54471 0.91786 1.25455 1.05318 0.92916 0.94055 1.69674 1.38425 0.99136 1.47502 0.85169 0.76203 0.79009 0.79899 1.18386 1.17971 1.18592 0.91065 0.88072 0.93382 0.75255 0.87523 0.89620 0.90944 0.91603 0.86575 0.91686 0.85675 0.88775 0.88253 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.17 9.93 71.23 0.71 -1.46 16 2 C -0.16 -5.44 6.25 -19.71 -0.12 -5.57 16 3 C 0.00 0.10 10.48 83.53 0.88 0.97 16 4 N -0.27 -7.20 3.23 -326.60 -1.05 -8.26 16 5 C 0.14 2.41 3.17 45.15 0.14 2.56 16 6 C -0.16 -2.49 5.74 30.69 0.18 -2.31 16 7 C 0.07 0.78 6.84 72.01 0.49 1.28 16 8 O -0.39 -4.95 10.77 -148.98 -1.60 -6.56 16 9 C 0.07 0.54 6.84 72.02 0.49 1.03 16 10 C -0.16 -1.62 5.10 30.73 0.16 -1.46 16 11 N -0.27 -10.73 11.99 -48.23 -0.58 -11.31 16 12 C -0.02 -0.83 7.17 42.41 0.30 -0.52 16 13 C 0.49 27.43 7.90 70.27 0.56 27.98 16 14 O -0.55 -32.97 14.36 19.75 0.28 -32.69 16 15 O -0.25 -15.04 8.58 10.99 0.09 -14.95 16 16 C -0.41 -26.99 10.11 67.95 0.69 -26.30 16 17 H 0.06 4.68 7.09 -2.91 -0.02 4.66 16 18 C 0.02 1.44 5.49 84.89 0.47 1.91 16 19 N -0.91 -56.60 13.96 21.63 0.30 -56.30 16 20 Si 0.98 47.06 28.62 68.60 1.96 49.02 16 21 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 23 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 26 H 0.05 1.77 6.72 -2.39 -0.02 1.75 16 27 H 0.23 2.78 7.08 -2.91 -0.02 2.76 16 28 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 32 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.10 0.80 6.91 -2.39 -0.02 0.78 16 37 H 0.29 16.28 8.31 -92.71 -0.77 15.51 16 Total: -1.00 -84.45 315.37 5.42 -79.03 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: 1.08 Total: 3.90 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 4.93 Total: -1.90 kcal Atomic # 7 Polarization: -74.54 SS G_CDS: -1.33 Total: -75.87 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -1.23 Total: -54.19 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.96 Total: 49.02 kcal Total: -84.45 5.42 -79.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869582763.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.552 kcal (2) G-P(sol) polarization free energy of solvation -84.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds