Wall clock time and date at job start Tue Mar 31 2020 02:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35308 * 128.03539 * 2 1 4 4 O 1.34016 * 106.67591 * 180.24488 * 3 2 1 5 5 N 1.20912 * 111.85323 * 359.74564 * 4 3 2 6 6 C 1.31008 * 111.43148 * 359.97438 * 5 4 3 7 7 C 1.48246 * 126.94112 * 179.97438 * 6 5 4 8 8 O 1.21411 * 119.99818 * 180.02562 * 7 6 5 9 9 O 1.34651 * 119.99904 * 0.02986 * 7 6 5 10 10 C 1.45201 * 116.99862 * 179.97438 * 9 7 6 11 11 C 1.53081 * 109.44761 * 89.78951 * 10 9 7 12 12 C 1.53190 * 109.29209 * 181.24261 * 11 10 9 13 13 N 1.46921 * 108.89311 * 305.57883 * 12 11 10 14 14 C 1.36940 * 120.63187 * 233.51481 * 13 12 11 15 15 H 1.08001 * 120.00319 * 152.61971 * 14 13 12 16 16 C 1.38813 * 119.99903 * 332.62203 * 14 13 12 17 17 N 1.31624 * 120.00070 * 159.34992 * 16 14 13 18 18 Si 1.86800 * 120.00077 * 339.35529 * 16 14 13 19 19 H 1.48494 * 109.47321 * 92.87851 * 18 16 14 20 20 H 1.48501 * 109.47194 * 212.88430 * 18 16 14 21 21 H 1.48509 * 109.46983 * 332.87654 * 18 16 14 22 22 C 1.46923 * 118.74178 * 53.54201 * 13 12 11 23 23 C 1.53035 * 109.46027 * 209.99948 * 10 9 7 24 24 H 1.09004 * 109.46954 * 270.15664 * 1 2 3 25 25 H 1.08999 * 109.47691 * 30.16090 * 1 2 3 26 26 H 1.09002 * 109.47377 * 150.16632 * 1 2 3 27 27 H 1.08006 * 126.66724 * 359.97438 * 3 2 1 28 28 H 1.08996 * 109.46004 * 329.97882 * 10 9 7 29 29 H 1.08992 * 109.38800 * 61.36680 * 11 10 9 30 30 H 1.09002 * 109.61927 * 301.25958 * 11 10 9 31 31 H 1.08999 * 109.58729 * 185.71870 * 12 11 10 32 32 H 1.09004 * 109.58886 * 65.43758 * 12 11 10 33 33 H 0.97001 * 119.99914 * 180.02562 * 17 16 14 34 34 H 1.09004 * 109.59094 * 66.17180 * 22 13 12 35 35 H 1.09001 * 109.59077 * 186.46452 * 22 13 12 36 36 H 1.09002 * 109.49848 * 58.66798 * 23 10 9 37 37 H 1.08999 * 109.49849 * 298.56607 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3407 1.0657 0.0000 4 8 3.5888 0.5776 -0.0055 5 7 3.5992 -0.6314 -0.0037 6 6 2.3839 -1.1206 0.0036 7 6 1.9999 -2.5525 0.0073 8 8 0.8271 -2.8664 0.0138 9 8 2.9518 -3.5048 0.0036 10 6 2.5027 -4.8857 0.0082 11 6 2.3322 -5.3709 -1.4336 12 6 1.8288 -6.8177 -1.4245 13 7 2.7425 -7.6343 -0.6141 14 6 3.3023 -8.7735 -1.1282 15 1 4.2560 -9.1206 -0.7590 16 6 2.6439 -9.4819 -2.1239 17 7 3.3153 -10.3094 -2.8966 18 14 0.8051 -9.2610 -2.3674 19 1 0.5636 -8.2084 -3.3866 20 1 0.2092 -10.5412 -2.8270 21 1 0.1805 -8.8579 -1.0818 22 6 3.0440 -7.2059 0.7586 23 6 3.5373 -5.7559 0.7254 24 1 -0.3633 0.0028 1.0277 25 1 -0.3634 0.8885 -0.5163 26 1 -0.3634 -0.8915 -0.5112 27 1 2.0558 2.1075 -0.0004 28 1 1.5470 -4.9550 0.5277 29 1 3.2922 -5.3230 -1.9474 30 1 1.6106 -4.7378 -1.9500 31 1 1.8023 -7.2018 -2.4442 32 1 0.8278 -6.8536 -0.9945 33 1 2.8553 -10.8041 -3.5927 34 1 2.1426 -7.2713 1.3681 35 1 3.8176 -7.8476 1.1802 36 1 3.6729 -5.3943 1.7447 37 1 4.4865 -5.7067 0.1920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870244879.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:15:01 Heat of formation + Delta-G solvation = 2.630336 kcal Electronic energy + Delta-G solvation = -21959.953915 eV Core-core repulsion = 18513.879149 eV Total energy + Delta-G solvation = -3446.074766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.47489 -40.47554 -37.86554 -36.19788 -35.04949 -32.96715 -32.51710 -30.60992 -30.48622 -28.59593 -26.11774 -24.65844 -22.93036 -22.24724 -22.00498 -20.93622 -19.69396 -18.51528 -18.15802 -17.37008 -16.98198 -16.30794 -15.76272 -15.19876 -14.60360 -14.24377 -13.89364 -13.79781 -13.65021 -13.55076 -13.34434 -12.90708 -12.72347 -12.47956 -12.09913 -11.90061 -11.71862 -11.49259 -10.92394 -10.84611 -10.78151 -10.67459 -10.44760 -10.18754 -10.03220 -9.83200 -9.74387 -9.43072 -8.68061 -7.06555 -5.98363 -3.35499 0.74810 1.24469 2.31355 2.71237 2.80413 3.30427 3.46933 3.49682 3.66298 4.26381 4.48766 4.50151 4.67394 4.85501 5.02824 5.07191 5.13361 5.24623 5.28763 5.33625 5.43371 5.46875 5.71953 5.83489 5.93827 6.02099 6.07917 6.18039 6.27350 6.47863 6.54010 6.54350 6.61302 6.86575 7.50422 7.76690 7.90336 8.28950 8.88067 9.67182 10.03137 11.17293 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.032984 B = 0.003977 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.682080 B = 7038.484551 C = 7411.001939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.147 4.147 3 C -0.068 4.068 4 O 0.134 5.866 5 N -0.303 5.303 6 C -0.016 4.016 7 C 0.547 3.453 8 O -0.487 6.487 9 O -0.338 6.338 10 C 0.098 3.902 11 C -0.149 4.149 12 C 0.130 3.870 13 N -0.606 5.606 14 C -0.264 4.264 15 H 0.088 0.912 16 C 0.025 3.975 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.288 1.288 20 H -0.301 1.301 21 H -0.270 1.270 22 C 0.152 3.848 23 C -0.130 4.130 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.227 0.773 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.030 0.970 33 H 0.263 0.737 34 H 0.027 0.973 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.221 23.701 6.979 25.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.152 4.152 3 C -0.149 4.149 4 O 0.053 5.947 5 N 0.000 5.000 6 C -0.173 4.173 7 C 0.388 3.612 8 O -0.373 6.373 9 O -0.254 6.254 10 C 0.045 3.955 11 C -0.188 4.188 12 C 0.004 3.996 13 N -0.329 5.329 14 C -0.392 4.392 15 H 0.106 0.894 16 C -0.174 4.174 17 N -0.548 5.548 18 Si 0.710 3.290 19 H -0.215 1.215 20 H -0.229 1.229 21 H -0.195 1.195 22 C 0.026 3.974 23 C -0.169 4.169 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.106 0.894 27 H 0.243 0.757 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.368 22.705 6.849 23.953 hybrid contribution -1.909 0.283 -0.319 1.956 sum -5.276 22.988 6.530 24.473 Atomic orbital electron populations 1.20269 0.86271 1.04172 1.03450 1.21361 0.99211 0.89723 1.04905 1.25819 0.82271 1.01342 1.05447 1.84845 1.29541 1.15266 1.65006 1.74384 1.21252 0.91168 1.13166 1.22443 0.89925 0.94256 1.10643 1.19463 0.84091 0.84327 0.73310 1.90832 1.18832 1.82310 1.45347 1.86667 1.38359 1.17925 1.82420 1.23029 0.99332 0.74594 0.98580 1.22514 1.02646 0.99018 0.94650 1.21334 0.92652 0.88447 0.97141 1.44429 1.53961 1.25603 1.08923 1.18929 1.01869 0.99764 1.18605 0.89436 1.25278 0.97740 0.96739 0.97645 1.69837 1.35291 1.30152 1.19552 0.86992 0.87982 0.75849 0.78144 1.21540 1.22927 1.19457 1.20918 0.98468 0.91196 0.86835 1.22244 0.98899 0.96331 0.99423 0.90281 0.90639 0.89405 0.75705 0.89910 0.90506 0.92211 0.90222 0.95241 0.92671 0.95516 0.90664 0.91649 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.01 36.01 0.36 -0.30 16 2 C -0.15 -1.43 6.34 -104.11 -0.66 -2.09 16 3 C -0.07 -0.46 12.24 29.69 0.36 -0.09 16 4 O 0.13 1.31 11.18 17.24 0.19 1.50 16 5 N -0.30 -4.03 12.12 33.29 0.40 -3.62 16 6 C -0.02 -0.21 7.24 -82.55 -0.60 -0.81 16 7 C 0.55 8.83 7.96 34.84 0.28 9.10 16 8 O -0.49 -8.35 14.60 -19.20 -0.28 -8.63 16 9 O -0.34 -5.87 9.89 -40.36 -0.40 -6.27 16 10 C 0.10 1.76 2.41 -26.67 -0.06 1.69 16 11 C -0.15 -2.89 5.73 -26.59 -0.15 -3.05 16 12 C 0.13 2.93 4.20 -3.71 -0.02 2.91 16 13 N -0.61 -14.53 2.77 -172.32 -0.48 -15.01 16 14 C -0.26 -7.38 10.03 -15.06 -0.15 -7.53 16 15 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 16 C 0.03 0.73 5.23 -17.43 -0.09 0.64 16 17 N -0.91 -27.82 13.97 55.49 0.78 -27.05 16 18 Si 0.88 22.49 24.34 -169.99 -4.14 18.35 16 19 H -0.29 -7.12 6.62 56.52 0.37 -6.74 16 20 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 21 H -0.27 -6.77 6.64 56.52 0.38 -6.40 16 22 C 0.15 2.98 6.52 -3.71 -0.02 2.96 16 23 C -0.13 -2.24 5.75 -26.61 -0.15 -2.39 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.88 6.89 -51.93 -0.36 0.53 16 27 H 0.23 0.31 8.06 -52.48 -0.42 -0.12 16 28 H 0.08 1.49 7.16 -51.93 -0.37 1.12 16 29 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.94 4.50 -51.93 -0.23 1.71 16 32 H 0.03 0.66 7.07 -51.93 -0.37 0.29 16 33 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 1.43 7.93 -51.93 -0.41 1.02 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 307.86 15.07 4.64 4.64 Total: -1.00 -33.12 307.86 -4.93 -38.04 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -4.74 Total: -3.01 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -0.91 Total: 1.04 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.70 Total: -45.68 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.49 Total: -13.39 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.14 Total: 18.35 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.12 -4.93 -38.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870244879.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.674 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds