Wall clock time and date at job start Tue Mar 31 2020 01:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34870 * 116.99717 * 2 1 4 4 O 1.21596 * 120.00181 * 359.97438 * 3 2 1 5 5 C 1.46673 * 119.99894 * 179.97438 * 3 2 1 6 6 C 1.36323 * 125.81391 * 179.97438 * 5 3 2 7 7 C 1.41527 * 106.97894 * 180.02562 * 6 5 3 8 8 C 1.46625 * 126.50757 * 179.97438 * 7 6 5 9 9 O 1.21321 * 119.99905 * 180.02562 * 8 7 6 10 10 C 1.50694 * 120.00273 * 0.02562 * 8 7 6 11 11 N 1.46493 * 109.47402 * 179.97438 * 10 8 7 12 12 C 1.46509 * 120.00070 * 89.99809 * 11 10 8 13 13 C 1.36935 * 120.00037 * 269.99693 * 11 10 8 14 14 H 1.07995 * 119.99886 * 23.04848 * 13 11 10 15 15 C 1.38817 * 120.00045 * 203.03981 * 13 11 10 16 16 N 1.31611 * 120.00041 * 12.95990 * 15 13 11 17 17 Si 1.86798 * 120.00039 * 192.96221 * 15 13 11 18 18 H 1.48496 * 109.47401 * 89.99639 * 17 15 13 19 19 H 1.48501 * 109.47343 * 210.00271 * 17 15 13 20 20 H 1.48505 * 109.46852 * 329.99839 * 17 15 13 21 21 C 1.38644 * 106.98276 * 359.97438 * 7 6 5 22 22 C 1.50691 * 125.81926 * 180.02562 * 21 7 6 23 23 N 1.34093 * 108.36203 * 0.26542 * 21 7 6 24 24 H 0.97003 * 125.34616 * 179.70017 * 23 21 7 25 25 H 1.08998 * 109.47154 * 60.00412 * 1 2 3 26 26 H 1.09001 * 109.47236 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47140 * 300.00234 * 1 2 3 28 28 H 1.08001 * 126.50920 * 359.97438 * 6 5 3 29 29 H 1.09003 * 109.47030 * 300.00422 * 10 8 7 30 30 H 1.09004 * 109.47192 * 59.99718 * 10 8 7 31 31 H 1.08996 * 109.46813 * 95.12084 * 12 11 10 32 32 H 1.08994 * 109.46839 * 215.12562 * 12 11 10 33 33 H 1.09001 * 109.46629 * 335.12589 * 12 11 10 34 34 H 0.96998 * 120.00007 * 179.97438 * 16 15 13 35 35 H 1.08993 * 109.47494 * 90.00383 * 22 21 7 36 36 H 1.09002 * 109.47312 * 330.00257 * 22 21 7 37 37 H 1.09000 * 109.47444 * 210.00159 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4020 2.2215 -0.0005 5 6 3.5290 1.2785 0.0006 6 6 4.2677 2.4243 0.0001 7 6 5.6293 2.0381 0.0004 8 6 6.7900 2.9340 -0.0005 9 8 7.9122 2.4728 -0.0007 10 6 6.5893 4.4275 -0.0011 11 7 7.8930 5.0955 -0.0013 12 6 8.5451 5.4290 -1.2702 13 6 8.5022 5.4083 1.1845 14 1 8.2461 4.8661 2.0827 15 6 9.4492 6.4222 1.2321 16 7 9.5806 7.2481 0.2159 17 14 10.5370 6.6143 2.7384 18 1 11.7717 5.8081 2.5635 19 1 10.8994 8.0443 2.9083 20 1 9.8045 6.1431 3.9413 21 6 5.6571 0.6520 0.0015 22 6 6.8964 -0.2052 0.0027 23 7 4.3932 0.2041 -0.0039 24 1 4.1285 -0.7291 -0.0086 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 3.8863 3.4347 -0.0011 29 1 6.0312 4.7186 -0.8911 30 1 6.0319 4.7195 0.8889 31 1 8.3107 6.4588 -1.5394 32 1 9.6242 5.3176 -1.1643 33 1 8.1854 4.7585 -2.0507 34 1 10.2420 7.9568 0.2493 35 1 7.1949 -0.4111 1.0305 36 1 7.7018 0.3196 -0.5112 37 1 6.6893 -1.1443 -0.5105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878046114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:44 Heat of formation + Delta-G solvation = -50.654649 kcal Electronic energy + Delta-G solvation = -21440.737020 eV Core-core repulsion = 17992.351644 eV Total energy + Delta-G solvation = -3448.385376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.69338 -40.12498 -38.09851 -36.65583 -34.94579 -32.04547 -31.62488 -31.00264 -28.59775 -27.59989 -26.44312 -25.68079 -23.36507 -22.29734 -20.67901 -20.37224 -19.06507 -17.87233 -17.13129 -16.68034 -16.59937 -15.56540 -15.07631 -15.02624 -14.53057 -14.13235 -13.84613 -13.71064 -13.50116 -13.41923 -13.01769 -12.83449 -12.54503 -12.51723 -12.42889 -11.85710 -11.59494 -11.12563 -11.06992 -10.91423 -10.77172 -10.59507 -10.29310 -9.89367 -9.79862 -9.13959 -9.03707 -8.39697 -8.28615 -6.64464 -5.62486 -3.08564 1.07900 1.79192 2.35604 2.85826 2.86097 3.46912 3.52666 3.54136 3.69584 4.52513 4.60935 4.69498 4.77731 4.83271 4.86686 4.99723 5.19050 5.35058 5.52419 5.54574 5.62205 5.72572 5.77968 6.02208 6.04245 6.31889 6.37307 6.48657 6.53971 6.80313 6.86642 7.13684 7.50746 7.50888 7.81466 7.91327 8.40998 8.57817 9.32498 9.94397 10.42917 11.42601 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026883 B = 0.003723 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.294510 B = 7519.134466 C = 7901.407999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.368 6.368 3 C 0.538 3.462 4 O -0.497 6.497 5 C -0.064 4.064 6 C -0.039 4.039 7 C -0.253 4.253 8 C 0.386 3.614 9 O -0.448 6.448 10 C 0.114 3.886 11 N -0.585 5.585 12 C 0.165 3.835 13 C -0.247 4.247 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.908 5.908 17 Si 0.906 3.094 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.280 1.280 21 C 0.131 3.869 22 C -0.099 4.099 23 N -0.522 5.522 24 H 0.422 0.578 25 H 0.065 0.935 26 H 0.101 0.899 27 H 0.065 0.935 28 H 0.162 0.838 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.033 0.967 32 H 0.042 0.958 33 H -0.004 1.004 34 H 0.252 0.748 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.311 -17.432 -2.075 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.285 6.285 3 C 0.383 3.617 4 O -0.385 6.385 5 C -0.172 4.172 6 C -0.065 4.065 7 C -0.261 4.261 8 C 0.260 3.740 9 O -0.322 6.322 10 C -0.016 4.016 11 N -0.306 5.306 12 C 0.021 3.979 13 C -0.377 4.377 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.554 5.554 17 Si 0.736 3.264 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.205 1.205 21 C 0.007 3.993 22 C -0.156 4.156 23 N -0.119 5.119 24 H 0.260 0.740 25 H 0.083 0.917 26 H 0.119 0.881 27 H 0.083 0.917 28 H 0.180 0.820 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.014 0.986 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.126 0.874 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.938 -17.307 -2.107 22.959 hybrid contribution 0.053 -0.374 0.808 0.892 sum -14.885 -17.681 -1.299 23.149 Atomic orbital electron populations 1.23266 0.75620 1.03675 1.02887 1.86538 1.23996 1.32978 1.85021 1.19854 0.86957 0.81696 0.73177 1.90917 1.65316 1.35714 1.46548 1.18782 0.86339 0.88159 1.23870 1.21393 0.91306 0.97484 0.96277 1.20783 0.95695 0.92447 1.17160 1.23665 0.86147 0.93199 0.71019 1.90426 1.26434 1.79224 1.36084 1.21011 0.90203 0.88800 1.01564 1.43617 1.16386 1.66849 1.03728 1.20798 0.96786 0.96291 0.84024 1.19146 1.18891 1.12076 0.87553 0.91636 1.24972 1.01028 0.95956 0.97648 1.70069 1.36312 1.17884 1.31106 0.86233 0.80975 0.76692 0.82511 1.21541 1.21833 1.20512 1.21340 0.85393 0.94345 0.98198 1.20684 0.93207 0.97687 1.04056 1.41670 1.05292 1.08933 1.55968 0.74002 0.91654 0.88072 0.91651 0.82014 0.91126 0.90031 0.94886 0.93960 0.98567 0.93831 0.89741 0.87449 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.34 16 2 O -0.37 -3.63 10.58 -40.96 -0.43 -4.07 16 3 C 0.54 6.70 7.93 34.14 0.27 6.98 16 4 O -0.50 -7.41 16.65 -19.34 -0.32 -7.73 16 5 C -0.06 -0.81 7.02 -82.43 -0.58 -1.39 16 6 C -0.04 -0.55 10.08 -39.02 -0.39 -0.95 16 7 C -0.25 -3.94 6.11 -105.11 -0.64 -4.59 16 8 C 0.39 7.52 7.20 -30.93 -0.22 7.30 16 9 O -0.45 -10.03 14.88 5.52 0.08 -9.95 16 10 C 0.11 2.37 5.62 -5.20 -0.03 2.34 16 11 N -0.59 -15.36 2.41 -182.50 -0.44 -15.80 16 12 C 0.17 4.29 8.98 59.85 0.54 4.83 16 13 C -0.25 -7.08 9.65 -15.06 -0.15 -7.23 16 14 H 0.07 1.86 7.86 -52.49 -0.41 1.45 16 15 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 16 N -0.91 -27.20 10.71 55.49 0.59 -26.61 16 17 Si 0.91 22.69 29.57 -169.99 -5.03 17.66 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C 0.13 1.67 7.21 -81.46 -0.59 1.08 16 22 C -0.10 -1.08 9.88 36.00 0.36 -0.72 16 23 N -0.52 -5.50 6.00 -5.57 -0.03 -5.54 16 24 H 0.42 3.05 8.96 -40.82 -0.37 2.68 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.16 2.13 8.05 -52.49 -0.42 1.71 16 29 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 30 H 0.08 1.63 8.04 -51.93 -0.42 1.21 16 31 H 0.03 0.90 7.34 -51.93 -0.38 0.52 16 32 H 0.04 1.18 7.34 -51.93 -0.38 0.80 16 33 H 0.00 -0.10 8.03 -51.93 -0.42 -0.52 16 34 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.11 1.44 6.46 -51.93 -0.34 1.10 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 326.65 15.07 4.92 4.92 Total: -1.00 -35.08 326.65 -5.91 -41.00 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -4.80 Total: -2.84 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -0.46 Total: 8.95 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.12 Total: -47.95 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.67 Total: -21.74 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.03 Total: 17.66 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.08 -5.91 -41.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878046114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.659 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds