Wall clock time and date at job start Tue Mar 31 2020 01:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34870 * 116.99717 * 2 1 4 4 O 1.21596 * 120.00181 * 359.97438 * 3 2 1 5 5 C 1.46673 * 119.99894 * 179.97438 * 3 2 1 6 6 C 1.36323 * 125.81391 * 179.97438 * 5 3 2 7 7 C 1.41527 * 106.97894 * 180.02562 * 6 5 3 8 8 C 1.46625 * 126.50757 * 179.97438 * 7 6 5 9 9 O 1.21321 * 119.99905 * 180.02562 * 8 7 6 10 10 C 1.50694 * 120.00273 * 0.02562 * 8 7 6 11 11 N 1.46493 * 109.47402 * 179.97438 * 10 8 7 12 12 C 1.46509 * 120.00070 * 89.99809 * 11 10 8 13 13 C 1.36935 * 120.00037 * 269.99693 * 11 10 8 14 14 H 1.07995 * 119.99886 * 23.04848 * 13 11 10 15 15 C 1.38817 * 120.00045 * 203.03981 * 13 11 10 16 16 N 1.31611 * 120.00041 * 12.95990 * 15 13 11 17 17 Si 1.86798 * 120.00039 * 192.96221 * 15 13 11 18 18 H 1.48496 * 109.47401 * 89.99639 * 17 15 13 19 19 H 1.48501 * 109.47343 * 210.00271 * 17 15 13 20 20 H 1.48505 * 109.46852 * 329.99839 * 17 15 13 21 21 C 1.38644 * 106.98276 * 359.97438 * 7 6 5 22 22 C 1.50691 * 125.81926 * 180.02562 * 21 7 6 23 23 N 1.34093 * 108.36203 * 0.26542 * 21 7 6 24 24 H 0.97003 * 125.34616 * 179.70017 * 23 21 7 25 25 H 1.08998 * 109.47154 * 60.00412 * 1 2 3 26 26 H 1.09001 * 109.47236 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47140 * 300.00234 * 1 2 3 28 28 H 1.08001 * 126.50920 * 359.97438 * 6 5 3 29 29 H 1.09003 * 109.47030 * 300.00422 * 10 8 7 30 30 H 1.09004 * 109.47192 * 59.99718 * 10 8 7 31 31 H 1.08996 * 109.46813 * 95.12084 * 12 11 10 32 32 H 1.08994 * 109.46839 * 215.12562 * 12 11 10 33 33 H 1.09001 * 109.46629 * 335.12589 * 12 11 10 34 34 H 0.96998 * 120.00007 * 179.97438 * 16 15 13 35 35 H 1.08993 * 109.47494 * 90.00383 * 22 21 7 36 36 H 1.09002 * 109.47312 * 330.00257 * 22 21 7 37 37 H 1.09000 * 109.47444 * 210.00159 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4020 2.2215 -0.0005 5 6 3.5290 1.2785 0.0006 6 6 4.2677 2.4243 0.0001 7 6 5.6293 2.0381 0.0004 8 6 6.7900 2.9340 -0.0005 9 8 7.9122 2.4728 -0.0007 10 6 6.5893 4.4275 -0.0011 11 7 7.8930 5.0955 -0.0013 12 6 8.5451 5.4290 -1.2702 13 6 8.5022 5.4083 1.1845 14 1 8.2461 4.8661 2.0827 15 6 9.4492 6.4222 1.2321 16 7 9.5806 7.2481 0.2159 17 14 10.5370 6.6143 2.7384 18 1 11.7717 5.8081 2.5635 19 1 10.8994 8.0443 2.9083 20 1 9.8045 6.1431 3.9413 21 6 5.6571 0.6520 0.0015 22 6 6.8964 -0.2052 0.0027 23 7 4.3932 0.2041 -0.0039 24 1 4.1285 -0.7291 -0.0086 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 3.8863 3.4347 -0.0011 29 1 6.0312 4.7186 -0.8911 30 1 6.0319 4.7195 0.8889 31 1 8.3107 6.4588 -1.5394 32 1 9.6242 5.3176 -1.1643 33 1 8.1854 4.7585 -2.0507 34 1 10.2420 7.9568 0.2493 35 1 7.1949 -0.4111 1.0305 36 1 7.7018 0.3196 -0.5112 37 1 6.6893 -1.1443 -0.5105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878046114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:43 Heat of formation + Delta-G solvation = -73.486563 kcal Electronic energy + Delta-G solvation = -21441.727086 eV Core-core repulsion = 17992.351644 eV Total energy + Delta-G solvation = -3449.375442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.73124 -41.06980 -39.66325 -37.56461 -36.93208 -33.44779 -32.83271 -32.61875 -29.43484 -29.10890 -27.88535 -27.41035 -24.73364 -23.63952 -22.21706 -21.41952 -20.10242 -19.19790 -18.68119 -18.01932 -17.52990 -17.00897 -16.52893 -16.19366 -16.09850 -15.61498 -15.47631 -14.87574 -14.61329 -14.49768 -14.41534 -14.25706 -13.97245 -13.56805 -13.40198 -13.05980 -13.04898 -12.78683 -12.74400 -12.52358 -12.26398 -11.97984 -11.90500 -11.87350 -11.85736 -10.82834 -10.39563 -10.21911 -9.36223 -8.73174 -7.80246 -5.29030 0.08865 0.52109 1.46386 1.49464 1.49733 1.57503 1.82273 1.95357 2.34789 2.52382 3.25189 3.46519 3.73279 3.78815 3.84729 4.01806 4.29183 4.34168 4.34997 4.56926 4.66520 4.68738 4.70585 4.75875 4.78062 4.87428 5.00986 5.16675 5.19979 5.34565 5.42452 5.62740 5.66443 5.70342 6.29052 6.33204 6.58418 6.99954 7.16845 7.86403 8.30073 9.23110 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026883 B = 0.003723 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.294510 B = 7519.134466 C = 7901.407999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.361 6.361 3 C 0.543 3.457 4 O -0.526 6.526 5 C -0.061 4.061 6 C -0.048 4.048 7 C -0.284 4.284 8 C 0.395 3.605 9 O -0.486 6.486 10 C 0.106 3.894 11 N -0.605 5.605 12 C 0.182 3.818 13 C -0.256 4.256 14 H 0.063 0.937 15 C -0.053 4.053 16 N -0.938 5.938 17 Si 0.969 3.031 18 H -0.290 1.290 19 H -0.290 1.290 20 H -0.268 1.268 21 C 0.151 3.849 22 C -0.098 4.098 23 N -0.498 5.498 24 H 0.442 0.558 25 H 0.064 0.936 26 H 0.137 0.863 27 H 0.063 0.937 28 H 0.164 0.836 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.014 0.986 32 H 0.010 0.990 33 H 0.022 0.978 34 H 0.249 0.751 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.916 -19.991 -1.568 26.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.278 6.278 3 C 0.390 3.610 4 O -0.416 6.416 5 C -0.169 4.169 6 C -0.073 4.073 7 C -0.292 4.292 8 C 0.272 3.728 9 O -0.363 6.363 10 C -0.022 4.022 11 N -0.327 5.327 12 C 0.037 3.963 13 C -0.387 4.387 14 H 0.081 0.919 15 C -0.248 4.248 16 N -0.584 5.584 17 Si 0.797 3.203 18 H -0.217 1.217 19 H -0.216 1.216 20 H -0.193 1.193 21 C 0.024 3.976 22 C -0.155 4.155 23 N -0.095 5.095 24 H 0.284 0.716 25 H 0.083 0.917 26 H 0.155 0.845 27 H 0.082 0.918 28 H 0.181 0.819 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.032 0.968 32 H 0.029 0.971 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.618 -19.930 -1.596 25.998 hybrid contribution 0.380 0.294 0.619 0.783 sum -16.238 -19.637 -0.978 25.500 Atomic orbital electron populations 1.23621 0.73672 1.06059 1.02863 1.86529 1.25788 1.31204 1.84271 1.19771 0.86740 0.82038 0.72486 1.90911 1.65871 1.36873 1.47932 1.18750 0.86815 0.88201 1.23122 1.21446 0.90916 0.98377 0.96547 1.20289 0.94639 0.93446 1.20798 1.23289 0.86815 0.92752 0.69930 1.90421 1.27965 1.79506 1.38444 1.21278 0.88191 0.89754 1.02948 1.43806 1.18228 1.67691 1.02950 1.20508 0.94979 0.95850 0.84995 1.19403 1.19216 1.11693 0.88357 0.91938 1.25749 1.02476 0.95974 1.00582 1.70216 1.36900 1.18422 1.32896 0.85243 0.78961 0.76439 0.79674 1.21691 1.21645 1.19263 1.21453 0.86629 0.93509 0.95979 1.20726 0.91335 0.98678 1.04751 1.41554 1.04115 1.09651 1.54220 0.71615 0.91691 0.84497 0.91770 0.81892 0.88949 0.89408 0.96782 0.97103 0.95903 0.94216 0.88914 0.90080 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 113.37 1.20 1.53 16 2 O -0.36 -6.04 10.58 -57.84 -0.61 -6.66 16 3 C 0.54 12.38 7.93 70.02 0.56 12.94 16 4 O -0.53 -14.98 16.65 19.52 0.33 -14.66 16 5 C -0.06 -1.41 7.02 39.95 0.28 -1.13 16 6 C -0.05 -1.29 10.08 22.63 0.23 -1.06 16 7 C -0.28 -8.56 6.11 -20.18 -0.12 -8.68 16 8 C 0.39 15.39 7.20 27.87 0.20 15.60 16 9 O -0.49 -22.06 14.88 -3.16 -0.05 -22.11 16 10 C 0.11 4.43 5.62 85.63 0.48 4.91 16 11 N -0.61 -32.34 2.41 -731.32 -1.76 -34.10 16 12 C 0.18 9.66 8.98 127.77 1.15 10.81 16 13 C -0.26 -14.95 9.65 84.03 0.81 -14.14 16 14 H 0.06 3.60 7.86 -2.91 -0.02 3.57 16 15 C -0.05 -3.12 5.10 84.86 0.43 -2.69 16 16 N -0.94 -57.54 10.71 21.65 0.23 -57.30 16 17 Si 0.97 47.27 29.57 68.60 2.03 49.30 16 18 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 19 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 21 C 0.15 3.48 7.21 42.31 0.31 3.79 16 22 C -0.10 -1.88 9.88 71.23 0.70 -1.17 16 23 N -0.50 -8.88 6.00 -171.54 -1.03 -9.91 16 24 H 0.44 4.50 8.96 -92.71 -0.83 3.67 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.16 4.22 8.05 -2.91 -0.02 4.20 16 29 H 0.09 3.41 8.07 -2.39 -0.02 3.39 16 30 H 0.09 3.53 8.04 -2.39 -0.02 3.51 16 31 H 0.01 0.79 7.34 -2.39 -0.02 0.77 16 32 H 0.01 0.60 7.34 -2.39 -0.02 0.58 16 33 H 0.02 1.05 8.03 -2.39 -0.02 1.03 16 34 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 35 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.08 2.09 6.46 -2.39 -0.02 2.08 16 37 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -77.21 326.65 5.62 -71.59 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: 0.27 Total: 3.14 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 6.22 Total: 20.70 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -2.56 Total: -101.31 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -0.33 Total: -43.42 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -77.21 5.62 -71.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878046114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.896 kcal (2) G-P(sol) polarization free energy of solvation -77.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds