Wall clock time and date at job start Tue Mar 31 2020 01:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31379 * 1 3 3 Si 1.86792 * 120.00137 * 2 1 4 4 H 1.48506 * 109.47325 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47371 * 300.00174 * 3 2 1 6 6 H 1.48496 * 109.47098 * 60.00233 * 3 2 1 7 7 C 1.39032 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00529 * 179.97438 * 7 2 1 9 9 N 1.36856 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00048 * 180.02562 * 9 7 2 11 11 O 1.21745 * 119.99987 * 0.02562 * 10 9 7 12 12 C 1.46514 * 119.99876 * 180.02562 * 10 9 7 13 13 C 1.36672 * 125.99421 * 179.97438 * 12 10 9 14 14 C 1.40317 * 106.70450 * 180.02562 * 13 12 10 15 15 C 1.35161 * 107.13025 * 359.97438 * 14 13 12 16 16 C 1.50695 * 125.61433 * 180.02562 * 15 14 13 17 17 N 1.46905 * 109.47046 * 89.99829 * 16 15 14 18 18 C 1.47010 * 111.00424 * 293.63569 * 17 16 15 19 19 C 1.53092 * 109.26081 * 177.60509 * 18 17 16 20 20 O 1.43016 * 109.25691 * 56.85376 * 19 18 17 21 21 C 1.43018 * 113.73748 * 301.32704 * 20 19 18 22 22 C 1.47020 * 111.00175 * 170.00021 * 17 16 15 23 23 O 1.33964 * 108.77852 * 0.02562 * 15 14 13 24 24 H 0.97002 * 120.00204 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99643 * 0.02562 * 9 7 2 26 26 H 1.08003 * 126.64556 * 359.97438 * 13 12 10 27 27 H 1.08004 * 126.43640 * 180.02562 * 14 13 12 28 28 H 1.08996 * 109.47586 * 209.99797 * 16 15 14 29 29 H 1.08997 * 109.47132 * 330.00325 * 16 15 14 30 30 H 1.08998 * 109.50662 * 297.54581 * 18 17 16 31 31 H 1.09006 * 109.50383 * 57.66945 * 18 17 16 32 32 H 1.09001 * 109.50995 * 296.91679 * 19 18 17 33 33 H 1.09001 * 109.54053 * 176.80789 * 19 18 17 34 34 H 1.09006 * 109.50505 * 298.74024 * 21 20 19 35 35 H 1.09000 * 109.54303 * 178.62979 * 21 20 19 36 36 H 1.09000 * 109.50285 * 302.33162 * 22 17 16 37 37 H 1.08999 * 109.50474 * 62.45526 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6176 0.0000 4 1 3.7078 1.3463 -0.0006 5 1 1.8891 2.3964 -1.2124 6 1 1.8891 2.3963 1.2125 7 6 2.0090 -1.2040 -0.0005 8 1 3.0889 -1.2041 -0.0010 9 7 1.3247 -2.3892 -0.0005 10 6 1.9985 -3.5564 -0.0005 11 8 3.2160 -3.5565 -0.0001 12 6 1.2659 -4.8252 -0.0011 13 6 1.8219 -6.0738 -0.0017 14 6 0.7582 -6.9889 -0.0027 15 6 -0.3860 -6.2694 -0.0021 16 6 -1.7810 -6.8394 -0.0023 17 7 -2.2341 -7.0255 1.3827 18 6 -1.4409 -8.0600 2.0622 19 6 -1.9054 -8.1790 3.5160 20 8 -3.3061 -8.4670 3.5415 21 6 -4.1089 -7.4794 2.8891 22 6 -3.6666 -7.3533 1.4289 23 8 -0.0759 -4.9662 -0.0014 24 1 -0.4850 0.8400 0.0004 25 1 0.3547 -2.3892 -0.0005 26 1 2.8757 -6.3102 -0.0022 27 1 0.8386 -8.0660 -0.0029 28 1 -2.4541 -6.1527 -0.5156 29 1 -1.7808 -7.8004 -0.5166 30 1 -1.5793 -9.0155 1.5564 31 1 -0.3865 -7.7843 2.0384 32 1 -1.7174 -7.2398 4.0363 33 1 -1.3594 -8.9836 4.0086 34 1 -3.9848 -6.5198 3.3912 35 1 -5.1566 -7.7776 2.9276 36 1 -4.2369 -6.5617 0.9429 37 1 -3.8406 -8.2975 0.9130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879173626.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:47 Heat of formation + Delta-G solvation = -59.134477 kcal Electronic energy + Delta-G solvation = -21572.857301 eV Core-core repulsion = 18124.104212 eV Total energy + Delta-G solvation = -3448.753089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.15746 -39.66172 -37.95902 -36.10419 -34.21167 -32.63061 -31.40871 -31.39107 -30.65547 -27.84668 -25.55349 -24.32994 -24.09795 -21.64075 -20.90628 -20.54899 -19.42543 -18.21451 -17.06362 -16.86668 -16.33989 -15.77052 -15.46245 -15.30227 -15.11198 -14.80661 -14.25844 -14.04273 -13.92741 -13.24478 -13.15801 -12.85139 -12.63167 -12.45237 -12.39975 -11.92213 -11.67303 -11.60161 -11.24256 -11.21182 -10.77475 -10.44788 -10.37132 -9.91170 -9.72614 -9.53615 -8.82539 -8.65216 -8.20052 -7.98507 -6.62041 -3.96256 1.67718 2.70074 3.13438 3.17028 3.20350 3.27278 3.60956 3.75991 4.04368 4.19380 4.62555 4.70208 4.75624 4.89904 4.92301 4.95778 5.11731 5.20178 5.25111 5.29699 5.34717 5.39995 5.46529 5.56576 5.66359 5.76056 5.86344 6.17878 6.28068 6.49186 6.64855 6.71469 6.86323 6.92999 7.36589 7.42629 7.89304 8.41673 8.96359 9.32801 9.84641 10.53913 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022342 B = 0.003845 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.951727 B = 7280.805659 C = 7994.390023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.299 4.299 8 H 0.111 0.889 9 N -0.529 5.529 10 C 0.496 3.504 11 O -0.582 6.582 12 C -0.013 4.013 13 C -0.170 4.170 14 C -0.206 4.206 15 C -0.013 4.013 16 C 0.137 3.863 17 N -0.534 5.534 18 C 0.013 3.987 19 C 0.064 3.936 20 O -0.388 6.388 21 C 0.063 3.937 22 C 0.019 3.981 23 O -0.156 6.156 24 H 0.277 0.723 25 H 0.399 0.601 26 H 0.152 0.848 27 H 0.143 0.857 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.184 -14.861 2.648 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.178 4.178 3 Si 0.763 3.237 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.429 4.429 8 H 0.129 0.871 9 N -0.161 5.161 10 C 0.282 3.718 11 O -0.469 6.469 12 C -0.067 4.067 13 C -0.191 4.191 14 C -0.226 4.226 15 C -0.066 4.066 16 C 0.011 3.989 17 N -0.260 5.260 18 C -0.115 4.115 19 C -0.013 4.013 20 O -0.307 6.307 21 C -0.014 4.014 22 C -0.109 4.109 23 O -0.051 6.051 24 H 0.087 0.913 25 H 0.234 0.766 26 H 0.170 0.830 27 H 0.161 0.839 28 H 0.113 0.887 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.771 -14.124 2.986 16.892 hybrid contribution -0.083 0.133 -0.638 0.657 sum -8.854 -13.991 2.349 16.723 Atomic orbital electron populations 1.69633 1.06236 1.28871 1.47251 1.25459 0.95706 1.00297 0.96343 0.85683 0.79822 0.80232 0.77976 1.18817 1.20399 1.20381 1.19931 0.93861 0.81917 1.47174 0.87083 1.41928 1.09858 1.04628 1.59685 1.16175 0.86520 0.80992 0.88073 1.90701 1.11723 1.85333 1.59159 1.22957 0.79174 0.97478 1.07115 1.21668 1.00381 0.90569 1.06506 1.21394 0.91561 1.00002 1.09648 1.22085 0.95970 0.81363 1.07133 1.20390 0.89838 0.99373 0.89337 1.62116 1.02987 1.45311 1.15565 1.22904 0.99903 0.93134 0.95558 1.22679 0.81592 1.01916 0.95153 1.87962 1.17641 1.47572 1.77500 1.22665 0.94975 0.92789 0.90944 1.22801 0.88877 1.00732 0.98490 1.84079 1.24365 1.26472 1.70157 0.91287 0.76639 0.83030 0.83874 0.88666 0.91579 0.93879 0.88694 0.91985 0.88370 0.91971 0.88385 0.89207 0.93802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.66 13.05 55.50 0.72 -22.94 16 2 C 0.03 0.70 5.50 -17.45 -0.10 0.60 16 3 Si 0.94 20.40 29.55 -169.99 -5.02 15.37 16 4 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.30 -8.34 9.68 -15.01 -0.15 -8.48 16 8 H 0.11 3.19 7.15 -52.49 -0.38 2.81 16 9 N -0.53 -14.12 5.27 -12.22 -0.06 -14.18 16 10 C 0.50 12.81 7.73 -12.93 -0.10 12.71 16 11 O -0.58 -16.54 16.44 5.15 0.08 -16.46 16 12 C -0.01 -0.29 7.13 -36.81 -0.26 -0.55 16 13 C -0.17 -3.17 10.62 -39.37 -0.42 -3.59 16 14 C -0.21 -3.13 9.30 -39.90 -0.37 -3.50 16 15 C -0.01 -0.20 6.23 -35.41 -0.22 -0.42 16 16 C 0.14 1.64 5.49 -4.98 -0.03 1.61 16 17 N -0.53 -6.35 4.72 -235.76 -1.11 -7.46 16 18 C 0.01 0.14 5.39 -3.72 -0.02 0.12 16 19 C 0.06 0.66 7.01 37.20 0.26 0.92 16 20 O -0.39 -4.38 10.83 -35.23 -0.38 -4.76 16 21 C 0.06 0.59 7.01 37.20 0.26 0.86 16 22 C 0.02 0.18 5.64 -3.71 -0.02 0.16 16 23 O -0.16 -3.11 10.40 4.89 0.05 -3.05 16 24 H 0.28 6.91 8.31 -40.82 -0.34 6.58 16 25 H 0.40 10.44 7.65 -40.82 -0.31 10.12 16 26 H 0.15 2.70 8.06 -52.48 -0.42 2.28 16 27 H 0.14 1.69 8.06 -52.48 -0.42 1.27 16 28 H 0.10 1.08 8.04 -51.93 -0.42 0.66 16 29 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 1.12 6.19 -51.93 -0.32 0.80 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 37 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 316.82 15.07 4.77 4.77 Total: -1.00 -31.57 316.82 -6.89 -38.47 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -4.78 Total: 9.80 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.16 Total: 0.44 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.45 Total: -44.57 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.25 Total: -24.28 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.57 -6.89 -38.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879173626.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.668 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds