Wall clock time and date at job start Tue Mar 31 2020 01:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31379 * 1 3 3 Si 1.86792 * 120.00137 * 2 1 4 4 H 1.48506 * 109.47325 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47371 * 300.00174 * 3 2 1 6 6 H 1.48496 * 109.47098 * 60.00233 * 3 2 1 7 7 C 1.39032 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00529 * 179.97438 * 7 2 1 9 9 N 1.36856 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00048 * 180.02562 * 9 7 2 11 11 O 1.21745 * 119.99987 * 0.02562 * 10 9 7 12 12 C 1.46514 * 119.99876 * 180.02562 * 10 9 7 13 13 C 1.36672 * 125.99421 * 179.97438 * 12 10 9 14 14 C 1.40317 * 106.70450 * 180.02562 * 13 12 10 15 15 C 1.35161 * 107.13025 * 359.97438 * 14 13 12 16 16 C 1.50695 * 125.61433 * 180.02562 * 15 14 13 17 17 N 1.46905 * 109.47046 * 89.99829 * 16 15 14 18 18 C 1.47010 * 111.00424 * 293.63569 * 17 16 15 19 19 C 1.53092 * 109.26081 * 177.60509 * 18 17 16 20 20 O 1.43016 * 109.25691 * 56.85376 * 19 18 17 21 21 C 1.43018 * 113.73748 * 301.32704 * 20 19 18 22 22 C 1.47020 * 111.00175 * 170.00021 * 17 16 15 23 23 O 1.33964 * 108.77852 * 0.02562 * 15 14 13 24 24 H 0.97002 * 120.00204 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99643 * 0.02562 * 9 7 2 26 26 H 1.08003 * 126.64556 * 359.97438 * 13 12 10 27 27 H 1.08004 * 126.43640 * 180.02562 * 14 13 12 28 28 H 1.08996 * 109.47586 * 209.99797 * 16 15 14 29 29 H 1.08997 * 109.47132 * 330.00325 * 16 15 14 30 30 H 1.08998 * 109.50662 * 297.54581 * 18 17 16 31 31 H 1.09006 * 109.50383 * 57.66945 * 18 17 16 32 32 H 1.09001 * 109.50995 * 296.91679 * 19 18 17 33 33 H 1.09001 * 109.54053 * 176.80789 * 19 18 17 34 34 H 1.09006 * 109.50505 * 298.74024 * 21 20 19 35 35 H 1.09000 * 109.54303 * 178.62979 * 21 20 19 36 36 H 1.09000 * 109.50285 * 302.33162 * 22 17 16 37 37 H 1.08999 * 109.50474 * 62.45526 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6176 0.0000 4 1 3.7078 1.3463 -0.0006 5 1 1.8891 2.3964 -1.2124 6 1 1.8891 2.3963 1.2125 7 6 2.0090 -1.2040 -0.0005 8 1 3.0889 -1.2041 -0.0010 9 7 1.3247 -2.3892 -0.0005 10 6 1.9985 -3.5564 -0.0005 11 8 3.2160 -3.5565 -0.0001 12 6 1.2659 -4.8252 -0.0011 13 6 1.8219 -6.0738 -0.0017 14 6 0.7582 -6.9889 -0.0027 15 6 -0.3860 -6.2694 -0.0021 16 6 -1.7810 -6.8394 -0.0023 17 7 -2.2341 -7.0255 1.3827 18 6 -1.4409 -8.0600 2.0622 19 6 -1.9054 -8.1790 3.5160 20 8 -3.3061 -8.4670 3.5415 21 6 -4.1089 -7.4794 2.8891 22 6 -3.6666 -7.3533 1.4289 23 8 -0.0759 -4.9662 -0.0014 24 1 -0.4850 0.8400 0.0004 25 1 0.3547 -2.3892 -0.0005 26 1 2.8757 -6.3102 -0.0022 27 1 0.8386 -8.0660 -0.0029 28 1 -2.4541 -6.1527 -0.5156 29 1 -1.7808 -7.8004 -0.5166 30 1 -1.5793 -9.0155 1.5564 31 1 -0.3865 -7.7843 2.0384 32 1 -1.7174 -7.2398 4.0363 33 1 -1.3594 -8.9836 4.0086 34 1 -3.9848 -6.5198 3.3912 35 1 -5.1566 -7.7776 2.9276 36 1 -4.2369 -6.5617 0.9429 37 1 -3.8406 -8.2975 0.9130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879173626.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:47 Heat of formation + Delta-G solvation = -83.271621 kcal Electronic energy + Delta-G solvation = -21573.903966 eV Core-core repulsion = 18124.104212 eV Total energy + Delta-G solvation = -3449.799754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.62033 -40.49433 -39.96334 -36.99724 -36.25027 -34.07738 -33.41950 -32.23580 -31.82441 -29.10531 -27.24701 -25.50692 -25.00914 -23.14098 -22.34452 -21.38358 -21.06187 -20.24152 -18.76409 -17.85797 -17.33509 -17.01829 -16.93630 -16.50592 -16.10271 -15.95232 -15.83052 -15.41937 -15.25648 -14.95579 -14.71045 -14.10007 -13.87524 -13.75830 -13.60054 -13.36323 -12.99892 -12.83790 -12.53912 -12.36165 -12.13986 -12.10970 -11.68783 -11.55820 -10.94702 -10.89920 -10.71124 -10.23971 -9.61894 -9.34060 -8.62181 -6.09166 0.13934 1.29810 1.40224 1.46538 1.56229 1.77799 2.24071 2.28884 2.77560 2.97154 3.03549 3.15085 3.62768 3.92629 3.95576 4.01003 4.06501 4.19566 4.22316 4.31626 4.38658 4.49412 4.63360 4.70404 4.73950 4.81903 4.88152 4.92059 4.97811 5.01109 5.28320 5.48838 5.74316 5.82436 5.89950 6.04887 6.16197 6.40349 6.90769 7.29273 7.81362 8.54978 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022342 B = 0.003845 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.951727 B = 7280.805659 C = 7994.390023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.008 4.008 3 Si 1.006 2.994 4 H -0.268 1.268 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.342 4.342 8 H 0.091 0.909 9 N -0.541 5.541 10 C 0.497 3.503 11 O -0.619 6.619 12 C -0.068 4.068 13 C -0.147 4.147 14 C -0.198 4.198 15 C 0.006 3.994 16 C 0.138 3.862 17 N -0.557 5.557 18 C 0.015 3.985 19 C 0.062 3.938 20 O -0.401 6.401 21 C 0.059 3.941 22 C 0.022 3.978 23 O -0.175 6.175 24 H 0.285 0.715 25 H 0.398 0.602 26 H 0.157 0.843 27 H 0.187 0.813 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.117 0.883 34 H 0.050 0.950 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.536 -16.650 2.449 19.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.210 4.210 3 Si 0.828 3.172 4 H -0.192 1.192 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.471 4.471 8 H 0.109 0.891 9 N -0.173 5.173 10 C 0.286 3.714 11 O -0.509 6.509 12 C -0.120 4.120 13 C -0.169 4.169 14 C -0.218 4.218 15 C -0.047 4.047 16 C 0.011 3.989 17 N -0.284 5.284 18 C -0.113 4.113 19 C -0.015 4.015 20 O -0.319 6.319 21 C -0.017 4.017 22 C -0.106 4.106 23 O -0.070 6.070 24 H 0.095 0.905 25 H 0.232 0.768 26 H 0.175 0.825 27 H 0.205 0.795 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.135 0.865 34 H 0.068 0.932 35 H 0.140 0.860 36 H 0.117 0.883 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.151 -15.922 2.789 19.087 hybrid contribution 0.216 0.449 -0.548 0.740 sum -9.935 -15.473 2.241 18.524 Atomic orbital electron populations 1.69693 1.07364 1.30207 1.47328 1.26347 0.96607 1.03100 0.94914 0.84692 0.78119 0.75703 0.78717 1.19171 1.19027 1.19098 1.19945 0.93343 0.83353 1.50461 0.89067 1.41936 1.09639 1.04885 1.60833 1.16702 0.86491 0.82122 0.86134 1.90640 1.13389 1.86532 1.60329 1.22203 0.80387 0.96468 1.12966 1.22004 1.01597 0.90171 1.03091 1.21764 0.89654 1.01587 1.08757 1.23108 0.98319 0.79847 1.03422 1.20610 0.87443 1.00759 0.90087 1.62044 1.04477 1.46455 1.15412 1.22891 0.99095 0.93544 0.95771 1.22738 0.81649 1.01938 0.95138 1.87949 1.17998 1.48125 1.77870 1.22824 0.96050 0.92092 0.90780 1.22846 0.87360 1.01763 0.98592 1.84046 1.23344 1.28948 1.70705 0.90516 0.76778 0.82484 0.79532 0.88049 0.88171 0.92221 0.89764 0.93561 0.86516 0.93180 0.86012 0.88276 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.58 13.05 21.68 0.28 -49.29 16 2 C -0.01 -0.41 5.50 84.95 0.47 0.05 16 3 Si 1.01 42.29 29.55 68.60 2.03 44.32 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.34 -19.99 9.68 84.10 0.81 -19.18 16 8 H 0.09 5.56 7.15 -2.91 -0.02 5.54 16 9 N -0.54 -30.43 5.27 -310.76 -1.64 -32.07 16 10 C 0.50 26.96 7.73 86.40 0.67 27.63 16 11 O -0.62 -36.94 16.44 -4.49 -0.07 -37.02 16 12 C -0.07 -3.00 7.13 24.06 0.17 -2.83 16 13 C -0.15 -5.35 10.62 22.41 0.24 -5.11 16 14 C -0.20 -5.40 9.30 22.07 0.21 -5.20 16 15 C 0.01 0.17 6.23 24.97 0.16 0.32 16 16 C 0.14 2.82 5.49 85.55 0.47 3.29 16 17 N -0.56 -11.70 4.72 -899.80 -4.24 -15.94 16 18 C 0.01 0.28 5.39 86.31 0.47 0.74 16 19 C 0.06 1.17 7.01 72.01 0.50 1.68 16 20 O -0.40 -8.16 10.83 -148.98 -1.61 -9.77 16 21 C 0.06 0.98 7.01 72.01 0.50 1.49 16 22 C 0.02 0.34 5.64 86.31 0.49 0.83 16 23 O -0.17 -6.95 10.40 -5.42 -0.06 -7.01 16 24 H 0.29 14.27 8.31 -92.71 -0.77 13.50 16 25 H 0.40 21.94 7.65 -92.71 -0.71 21.24 16 26 H 0.16 5.46 8.06 -2.91 -0.02 5.44 16 27 H 0.19 3.44 8.06 -2.91 -0.02 3.41 16 28 H 0.10 1.98 8.04 -2.39 -0.02 1.97 16 29 H 0.10 1.44 8.12 -2.39 -0.02 1.42 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.75 6.19 -2.38 -0.01 1.74 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.10 1.38 8.09 -2.39 -0.02 1.36 16 37 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -71.36 316.82 0.22 -71.14 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.38 Total: 31.92 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 5.15 Total: 3.71 kcal Atomic # 7 Polarization: -91.70 SS G_CDS: -5.60 Total: -97.30 kcal Atomic # 8 Polarization: -52.05 SS G_CDS: -1.74 Total: -53.80 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -71.36 0.22 -71.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879173626.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.133 kcal (2) G-P(sol) polarization free energy of solvation -71.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds