Wall clock time and date at job start Tue Mar 31 2020 01:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 110.35225 * 2 1 4 4 C 1.34778 * 119.99984 * 57.85619 * 3 2 1 5 5 O 1.21280 * 120.00107 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99954 * 180.02562 * 4 3 2 7 7 F 1.39901 * 109.46697 * 179.97438 * 6 4 3 8 8 F 1.39895 * 109.47040 * 299.99869 * 6 4 3 9 9 F 1.39901 * 109.47003 * 59.99841 * 6 4 3 10 10 C 1.54594 * 110.30938 * 122.13781 * 2 1 3 11 11 C 1.54933 * 102.91997 * 140.87634 * 10 2 1 12 12 N 1.48813 * 103.35205 * 322.69117 * 11 10 2 13 13 C 1.46897 * 111.18681 * 159.50572 * 12 11 10 14 14 C 1.50694 * 109.47194 * 52.66331 * 13 12 11 15 15 H 1.08004 * 120.00091 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00250 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99717 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47289 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47015 * 120.00334 * 18 16 14 21 21 H 1.48501 * 109.47167 * 239.99667 * 18 16 14 22 22 C 1.47905 * 105.67450 * 38.97719 * 12 11 10 23 23 H 1.09001 * 109.47007 * 182.13946 * 1 2 3 24 24 H 1.08996 * 109.47518 * 302.14382 * 1 2 3 25 25 H 1.09006 * 109.47010 * 62.14622 * 1 2 3 26 26 H 0.97006 * 120.00119 * 237.85809 * 3 2 1 27 27 H 1.08999 * 110.72754 * 259.23534 * 10 2 1 28 28 H 1.08999 * 110.72080 * 22.51913 * 10 2 1 29 29 H 1.08998 * 110.66828 * 81.02294 * 11 10 2 30 30 H 1.09009 * 110.66924 * 203.98451 * 11 10 2 31 31 H 1.09000 * 109.47143 * 172.66998 * 13 12 11 32 32 H 1.09011 * 109.46966 * 292.66611 * 13 12 11 33 33 H 0.96997 * 119.99826 * 179.97438 * 17 16 14 34 34 H 1.09002 * 109.91668 * 215.45268 * 22 12 11 35 35 H 1.09002 * 109.91761 * 94.35443 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0395 1.3736 0.0000 4 6 1.6916 2.2214 0.9883 5 8 0.9564 1.8473 1.8774 6 6 2.2153 3.6345 0.9880 7 9 1.7191 4.3159 2.1046 8 9 3.6132 3.6138 1.0370 9 9 1.7991 4.2858 -0.1782 10 6 2.0665 -0.7713 1.2277 11 6 3.2855 -1.5346 0.6516 12 7 2.8343 -1.9234 -0.7122 13 6 3.9777 -2.2214 -1.5849 14 6 4.8718 -3.2320 -0.9140 15 1 4.6164 -3.6144 0.0633 16 6 6.0159 -3.6685 -1.5476 17 7 6.3266 -3.2032 -2.7378 18 14 7.1237 -4.9218 -0.7162 19 1 6.5556 -5.2840 0.6070 20 1 7.2194 -6.1374 -1.5640 21 1 8.4774 -4.3400 -0.5307 22 6 2.0645 -0.7683 -1.2228 23 1 -0.3633 -1.0270 0.0384 24 1 -0.3634 0.5467 0.8701 25 1 -0.3633 0.4802 -0.9087 26 1 2.6272 1.6729 -0.7113 27 1 2.3790 -0.0805 2.0108 28 1 1.3172 -1.4682 1.6030 29 1 4.1563 -0.8816 0.5942 30 1 3.5065 -2.4165 1.2530 31 1 3.6172 -2.6261 -2.5306 32 1 4.5400 -1.3064 -1.7721 33 1 7.1317 -3.5100 -3.1834 34 1 1.2327 -1.1176 -1.8346 35 1 2.7135 -0.1214 -1.8132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879761984.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:20 Heat of formation + Delta-G solvation = -176.702422 kcal Electronic energy + Delta-G solvation = -22846.159263 eV Core-core repulsion = 18850.451305 eV Total energy + Delta-G solvation = -3995.707958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.52665 -48.05337 -48.01549 -40.62160 -38.24404 -34.90243 -32.89230 -31.45030 -29.37741 -27.75689 -27.36763 -24.85906 -22.70427 -22.18548 -20.43349 -19.93381 -19.08026 -18.96169 -18.67610 -16.62717 -16.07305 -15.81833 -15.44158 -14.95697 -14.76567 -14.67857 -14.46131 -14.42373 -14.13879 -14.12899 -13.75646 -13.61510 -13.30549 -12.95863 -12.58873 -12.38508 -12.19998 -11.57685 -11.23728 -11.15886 -10.88076 -10.84394 -10.62462 -10.46605 -10.24622 -9.96416 -9.40996 -9.17924 -8.55722 -7.50823 -6.12777 -4.14722 1.60998 1.71299 2.87043 3.25653 3.33597 3.37844 3.46471 3.87429 3.91002 4.35394 4.59765 4.86204 4.91363 5.07508 5.24402 5.48343 5.60351 5.70537 5.76488 5.89286 6.09182 6.10969 6.23785 6.30212 6.51245 6.58313 6.87277 7.03979 7.20852 7.41388 7.62792 7.85514 8.04196 8.36769 8.92700 9.50638 10.98554 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.025390 B = 0.004323 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.534057 B = 6474.804717 C = 6832.690073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 N -0.685 5.685 4 C 0.484 3.516 5 O -0.476 6.476 6 C 0.447 3.553 7 F -0.156 7.156 8 F -0.167 7.167 9 F -0.170 7.170 10 C -0.127 4.127 11 C 0.052 3.948 12 N -0.512 5.512 13 C 0.184 3.816 14 C -0.515 4.515 15 H 0.065 0.935 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.036 3.964 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.409 0.591 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.034 0.966 32 H -0.007 1.007 33 H 0.262 0.738 34 H 0.086 0.914 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.360 12.496 5.023 16.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.075 3.925 3 N -0.337 5.337 4 C 0.261 3.739 5 O -0.348 6.348 6 C 0.389 3.611 7 F -0.137 7.137 8 F -0.148 7.148 9 F -0.151 7.151 10 C -0.165 4.165 11 C -0.076 4.076 12 N -0.236 5.236 13 C 0.058 3.942 14 C -0.554 4.554 15 H 0.083 0.917 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.211 1.211 22 C -0.093 4.093 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.246 0.754 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.011 0.989 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.060 11.721 5.513 16.401 hybrid contribution 1.753 0.595 -0.199 1.862 sum -8.307 12.317 5.314 15.778 Atomic orbital electron populations 1.22179 0.92830 1.03525 1.02817 1.21564 0.94760 0.78314 0.97906 1.46335 1.49179 1.12529 1.25700 1.20199 0.83527 0.85475 0.84661 1.90831 1.34078 1.74823 1.35110 1.20451 0.76563 0.89289 0.74791 1.93255 1.87263 1.81037 1.52160 1.93282 1.28696 1.96802 1.96028 1.93258 1.89913 1.83394 1.48545 1.22958 0.99127 0.98619 0.95844 1.23073 0.94459 0.98603 0.91501 1.65030 1.24542 1.31324 1.02751 1.19941 0.85905 0.95689 0.92632 1.21213 1.06112 1.24039 1.03993 0.91712 1.24987 0.97811 0.96721 0.94910 1.69958 1.25832 1.43870 1.13904 0.86440 0.80269 0.81113 0.79618 1.19614 1.20904 1.21061 1.23191 0.99126 0.92676 0.94304 0.90465 0.90645 0.92484 0.75441 0.91109 0.89748 0.94063 0.89872 0.94748 0.98900 0.92865 0.89572 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 8.15 37.16 0.30 -1.58 16 2 C 0.16 2.16 0.94 -130.46 -0.12 2.04 16 3 N -0.68 -8.27 5.15 -46.35 -0.24 -8.51 16 4 C 0.48 6.10 6.55 -10.98 -0.07 6.03 16 5 O -0.48 -7.07 13.50 5.56 0.08 -7.00 16 6 C 0.45 5.05 3.43 36.01 0.12 5.17 16 7 F -0.16 -1.89 16.92 2.25 0.04 -1.85 16 8 F -0.17 -1.91 17.30 2.25 0.04 -1.87 16 9 F -0.17 -1.78 17.30 2.25 0.04 -1.74 16 10 C -0.13 -1.91 5.85 -24.87 -0.15 -2.05 16 11 C 0.05 0.95 5.56 -1.74 -0.01 0.94 16 12 N -0.51 -10.24 5.40 -231.64 -1.25 -11.49 16 13 C 0.18 4.53 4.79 -4.98 -0.02 4.51 16 14 C -0.52 -13.89 8.57 -34.44 -0.30 -14.18 16 15 H 0.06 1.72 6.54 -52.48 -0.34 1.38 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -25.85 13.29 55.43 0.74 -25.11 16 18 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.04 0.57 6.15 -2.75 -0.02 0.55 16 23 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 24 H 0.07 0.98 6.04 -51.93 -0.31 0.66 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.41 4.28 8.09 -40.82 -0.33 3.95 16 27 H 0.07 1.07 6.81 -51.93 -0.35 0.71 16 28 H 0.08 1.22 7.84 -51.93 -0.41 0.81 16 29 H 0.04 0.80 8.02 -51.93 -0.42 0.39 16 30 H 0.08 1.60 7.18 -51.92 -0.37 1.23 16 31 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 32 H -0.01 -0.18 7.81 -51.92 -0.41 -0.58 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.09 1.26 7.68 -51.93 -0.40 0.86 16 35 H 0.05 0.71 6.88 -51.93 -0.36 0.35 16 LS Contribution 300.77 15.07 4.53 4.53 Total: -1.00 -29.12 300.77 -5.51 -34.63 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -4.10 Total: -0.56 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -0.36 Total: 2.91 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -0.75 Total: -45.11 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: 0.08 Total: -7.00 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.12 Total: -5.46 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.12 -5.51 -34.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879761984.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.072 kcal (2) G-P(sol) polarization free energy of solvation -29.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds