Wall clock time and date at job start Tue Mar 31 2020 01:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 110.27542 * 2 1 4 4 C 1.34777 * 119.99525 * 300.69730 * 3 2 1 5 5 O 1.21283 * 120.00463 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99675 * 179.72583 * 4 3 2 7 7 F 1.39903 * 109.47367 * 180.27899 * 6 4 3 8 8 F 1.39903 * 109.47174 * 300.27796 * 6 4 3 9 9 F 1.39898 * 109.47270 * 60.27681 * 6 4 3 10 10 C 1.54602 * 110.30754 * 237.90690 * 2 1 3 11 11 C 1.55203 * 102.79920 * 219.04937 * 10 2 1 12 12 N 1.48528 * 103.23623 * 37.43720 * 11 10 2 13 13 C 1.46902 * 110.99671 * 200.25384 * 12 11 10 14 14 C 1.50701 * 109.47028 * 287.39842 * 13 12 11 15 15 H 1.07993 * 119.99923 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99792 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99979 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00024 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47142 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47459 * 119.99496 * 18 16 14 21 21 H 1.48504 * 109.47260 * 239.99738 * 18 16 14 22 22 C 1.47895 * 105.82307 * 320.76639 * 12 11 10 23 23 H 1.09000 * 109.47166 * 59.30207 * 1 2 3 24 24 H 1.09002 * 109.47239 * 179.30162 * 1 2 3 25 25 H 1.09003 * 109.47097 * 299.30010 * 1 2 3 26 26 H 0.97000 * 120.00580 * 120.70476 * 3 2 1 27 27 H 1.08993 * 110.72501 * 337.38277 * 10 2 1 28 28 H 1.09000 * 110.71997 * 100.67111 * 10 2 1 29 29 H 1.08996 * 110.67759 * 278.98653 * 11 10 2 30 30 H 1.09001 * 110.77990 * 155.93595 * 11 10 2 31 31 H 1.09003 * 109.47192 * 47.39715 * 13 12 11 32 32 H 1.08998 * 109.47129 * 167.39655 * 13 12 11 33 33 H 0.97000 * 119.99398 * 180.02562 * 17 16 14 34 34 H 1.08999 * 109.92185 * 265.98029 * 22 12 11 35 35 H 1.08998 * 109.92240 * 144.68550 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3742 0.0000 4 6 1.7121 2.2127 -1.0037 5 8 0.9986 1.8298 -1.9066 6 6 2.2293 3.6282 -1.0006 7 9 1.7551 4.3005 -2.1321 8 9 1.7848 4.2846 0.1522 9 9 3.6281 3.6137 -1.0188 10 6 2.0665 -0.7703 -1.2284 11 6 3.2882 -1.5327 -0.6494 12 7 2.8333 -1.9216 0.7100 13 6 3.9768 -2.2224 1.5817 14 6 4.5876 -3.5380 1.1730 15 1 4.1681 -4.0952 0.3485 16 6 5.6815 -4.0308 1.8525 17 7 6.1921 -3.3525 2.8569 18 14 6.4382 -5.6619 1.3464 19 1 5.6833 -6.2225 0.1970 20 1 7.8543 -5.4498 0.9528 21 1 6.3784 -6.6107 2.4873 22 6 2.0645 -0.7673 1.2236 23 1 -0.3633 0.5246 -0.8837 24 1 -0.3634 -1.0276 -0.0125 25 1 -0.3633 0.5029 0.8962 26 1 2.6081 1.6806 0.7222 27 1 1.3179 -1.4682 -1.6032 28 1 2.3774 -0.0789 -2.0115 29 1 4.1580 -0.8784 -0.5915 30 1 3.5118 -2.4160 -1.2477 31 1 4.7216 -1.4318 1.4898 32 1 3.6387 -2.2845 2.6161 33 1 6.9618 -3.6991 3.3346 34 1 2.7147 -0.1204 1.8124 35 1 1.2326 -1.1174 1.8347 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879761985.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:23 Heat of formation + Delta-G solvation = -197.883422 kcal Electronic energy + Delta-G solvation = -22781.882296 eV Core-core repulsion = 18785.255861 eV Total energy + Delta-G solvation = -3996.626435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.45038 -48.96063 -48.94925 -41.75544 -39.55319 -36.27727 -34.73206 -32.84065 -30.74965 -29.09786 -28.68175 -26.42382 -24.30964 -23.30267 -21.99187 -21.04443 -20.15685 -19.88373 -19.64625 -18.57381 -17.36562 -17.06424 -16.62883 -16.43863 -16.07889 -15.69149 -15.59708 -15.33813 -15.29694 -15.05556 -15.04876 -14.95321 -14.48751 -14.32256 -14.12590 -13.86654 -13.40802 -13.15540 -12.91485 -12.62948 -12.45461 -12.43593 -12.08738 -11.95123 -11.81136 -11.37794 -11.18002 -10.61567 -10.51885 -9.18637 -8.21584 -6.30643 0.59257 0.71566 1.41247 1.42689 1.55535 1.91757 2.40442 2.49527 2.91711 2.98364 3.12040 3.36059 3.38386 3.66165 3.86438 4.31005 4.35228 4.40169 4.62779 4.76719 4.82545 4.91903 4.97520 5.02015 5.14286 5.20294 5.25016 5.28493 5.64576 5.84831 6.00429 6.19489 6.40701 6.50477 6.84916 7.39410 8.89649 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.028618 B = 0.004097 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.174772 B = 6832.893707 C = 7151.601785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.167 3.833 3 N -0.680 5.680 4 C 0.488 3.512 5 O -0.497 6.497 6 C 0.459 3.541 7 F -0.159 7.159 8 F -0.161 7.161 9 F -0.166 7.166 10 C -0.114 4.114 11 C 0.047 3.953 12 N -0.520 5.520 13 C 0.200 3.800 14 C -0.523 4.523 15 H 0.060 0.940 16 C 0.004 3.996 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.278 1.278 22 C 0.036 3.964 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.418 0.582 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.026 0.974 30 H 0.071 0.929 31 H -0.030 1.030 32 H 0.009 0.991 33 H 0.264 0.736 34 H 0.047 0.953 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.755 13.209 -5.874 17.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.082 3.918 3 N -0.333 5.333 4 C 0.266 3.734 5 O -0.371 6.371 6 C 0.401 3.599 7 F -0.140 7.140 8 F -0.143 7.143 9 F -0.148 7.148 10 C -0.152 4.152 11 C -0.081 4.081 12 N -0.244 5.244 13 C 0.073 3.927 14 C -0.561 4.561 15 H 0.079 0.921 16 C -0.194 4.194 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.189 1.189 20 H -0.206 1.206 21 H -0.204 1.204 22 C -0.092 4.092 23 H 0.087 0.913 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.256 0.744 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.044 0.956 30 H 0.089 0.911 31 H -0.012 1.012 32 H 0.027 0.973 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.444 12.456 -6.382 17.463 hybrid contribution 1.786 0.427 0.508 1.906 sum -8.658 12.883 -5.874 16.596 Atomic orbital electron populations 1.22119 0.91054 1.04041 1.03374 1.21405 0.95904 0.78608 0.95889 1.46241 1.50434 1.12138 1.24535 1.20297 0.82883 0.85901 0.84323 1.90835 1.35779 1.75021 1.35491 1.20100 0.76391 0.88543 0.74904 1.93255 1.88084 1.81414 1.51262 1.93281 1.88957 1.82914 1.49127 1.93290 1.28587 1.96786 1.96109 1.22887 0.97526 0.98517 0.96296 1.23111 0.95730 0.98304 0.90942 1.64841 1.22806 1.33984 1.02758 1.19566 0.86440 0.94872 0.91821 1.21467 1.12672 1.05742 1.16234 0.92132 1.25848 0.97356 1.01276 0.94930 1.70070 1.24573 1.40398 1.22337 0.85382 0.78008 0.79119 0.78409 1.18861 1.20557 1.20404 1.23230 0.98907 0.91702 0.95408 0.91254 0.89914 0.90813 0.74409 0.88780 0.90725 0.95609 0.91088 1.01193 0.97305 0.92689 0.93434 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.14 71.98 0.59 -2.58 16 2 C 0.17 4.19 0.94 4.49 0.00 4.19 16 3 N -0.68 -14.94 5.15 -418.94 -2.16 -17.10 16 4 C 0.49 11.24 6.54 87.66 0.57 11.82 16 5 O -0.50 -13.77 13.49 -3.04 -0.04 -13.81 16 6 C 0.46 9.39 3.43 71.24 0.24 9.64 16 7 F -0.16 -3.55 16.92 44.97 0.76 -2.79 16 8 F -0.16 -3.00 17.30 44.97 0.78 -2.22 16 9 F -0.17 -3.48 17.30 44.97 0.78 -2.70 16 10 C -0.11 -3.22 5.85 31.90 0.19 -3.04 16 11 C 0.05 1.71 6.13 86.74 0.53 2.24 16 12 N -0.52 -20.75 5.23 -887.03 -4.64 -25.39 16 13 C 0.20 10.07 4.47 85.56 0.38 10.45 16 14 C -0.52 -28.84 8.91 25.60 0.23 -28.61 16 15 H 0.06 3.31 7.81 -2.91 -0.02 3.29 16 16 C 0.00 0.22 5.46 84.65 0.46 0.69 16 17 N -0.93 -54.67 13.29 21.45 0.28 -54.38 16 18 Si 0.97 43.48 29.54 68.60 2.03 45.51 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 C 0.04 1.09 6.12 86.45 0.53 1.62 16 23 H 0.07 1.61 6.17 -2.39 -0.01 1.59 16 24 H 0.08 1.71 8.13 -2.39 -0.02 1.69 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.42 7.79 8.09 -92.71 -0.75 7.04 16 27 H 0.09 2.53 7.86 -2.39 -0.02 2.52 16 28 H 0.07 2.11 6.69 -2.39 -0.02 2.09 16 29 H 0.03 0.98 7.81 -2.39 -0.02 0.97 16 30 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 31 H -0.03 -1.61 7.83 -2.39 -0.02 -1.63 16 32 H 0.01 0.48 8.08 -2.39 -0.02 0.46 16 33 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 34 H 0.05 1.42 7.09 -2.39 -0.02 1.41 16 35 H 0.10 2.80 7.68 -2.39 -0.02 2.78 16 Total: -1.00 -62.25 303.37 1.89 -60.36 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 0.38 Total: 6.11 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 3.73 Total: 6.41 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -6.52 Total: -96.87 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.04 Total: -13.81 kcal Atomic # 9 Polarization: -10.02 SS G_CDS: 2.32 Total: -7.70 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -62.25 1.89 -60.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879761985.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.523 kcal (2) G-P(sol) polarization free energy of solvation -62.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds