Wall clock time and date at job start Tue Mar 31 2020 02:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31711 * 1 3 3 O 1.35665 * 119.99804 * 2 1 4 4 C 1.42902 * 116.99839 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47260 * 179.97438 * 4 3 2 6 6 O 1.45200 * 109.46730 * 64.99905 * 5 4 3 7 7 C 1.34756 * 116.99417 * 180.02562 * 6 5 4 8 8 O 1.21520 * 120.00292 * 359.97438 * 7 6 5 9 9 C 1.47291 * 119.99648 * 180.02562 * 7 6 5 10 10 C 1.41344 * 126.42578 * 0.03822 * 9 7 6 11 11 N 1.30427 * 108.01038 * 179.68626 * 10 9 7 12 12 N 1.39939 * 108.92113 * 0.44175 * 11 10 9 13 13 C 1.46491 * 125.74450 * 179.81281 * 12 11 10 14 14 C 1.50702 * 109.46957 * 269.69080 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.34222 * 108.50592 * 359.54733 * 12 11 10 23 23 C 1.50707 * 126.29232 * 180.23890 * 22 12 11 24 24 H 1.07997 * 119.99896 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.99863 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99458 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.47217 * 59.99372 * 4 3 2 28 28 H 1.09003 * 109.47051 * 299.99942 * 4 3 2 29 29 H 1.08996 * 109.46514 * 304.99873 * 5 4 3 30 30 H 1.08996 * 109.46848 * 184.99901 * 5 4 3 31 31 H 1.08000 * 125.99491 * 359.96182 * 10 9 7 32 32 H 1.09004 * 109.47166 * 149.69346 * 13 12 11 33 33 H 1.08994 * 109.47507 * 29.69052 * 13 12 11 34 34 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 35 35 H 1.09001 * 109.46792 * 89.99868 * 23 22 12 36 36 H 1.08995 * 109.47272 * 209.99987 * 23 22 12 37 37 H 1.08999 * 109.47175 * 330.00300 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3171 0.0000 0.0000 3 8 1.9954 1.1749 0.0000 4 6 3.4225 1.1001 0.0006 5 6 4.0073 2.5140 -0.0002 6 8 3.6572 3.1831 1.2400 7 6 4.0984 4.4464 1.3990 8 8 4.7580 4.9742 0.5255 9 6 3.7820 5.1872 2.6322 10 6 3.0314 4.7080 3.7299 11 7 2.9779 5.6545 4.6257 12 7 3.6722 6.7715 4.1477 13 6 3.8398 8.0426 4.8563 14 6 2.7066 8.9698 4.4995 15 1 1.9382 8.6445 3.8138 16 6 2.6474 10.2311 5.0532 17 7 3.5829 10.6271 5.8885 18 14 1.2387 11.3775 4.6168 19 1 -0.0490 10.7519 5.0113 20 1 1.4060 12.6644 5.3389 21 1 1.2394 11.6280 3.1531 22 6 4.1638 6.4799 2.9332 23 6 4.9814 7.3952 2.0586 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8570 -0.9354 0.0004 27 1 3.7588 0.5677 -0.8891 28 1 3.7581 0.5682 0.8908 29 1 3.6018 3.0744 -0.8425 30 1 5.0922 2.4583 -0.0893 31 1 2.5846 3.7284 3.8141 32 1 4.7868 8.4980 4.5666 33 1 3.8371 7.8625 5.9313 34 1 3.5415 11.5146 6.2778 35 1 6.0399 7.2609 2.2816 36 1 4.7977 7.1566 1.0111 37 1 4.6981 8.4301 2.2507 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892909358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:47 Heat of formation + Delta-G solvation = -40.099659 kcal Electronic energy + Delta-G solvation = -21055.582413 eV Core-core repulsion = 17607.654736 eV Total energy + Delta-G solvation = -3447.927677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.87792 -39.73837 -38.89667 -36.11735 -33.93022 -32.49138 -32.11644 -31.25950 -29.88239 -27.56151 -26.73682 -23.96847 -23.15249 -22.09542 -21.39448 -20.32646 -18.92389 -17.83418 -17.45127 -16.79817 -16.50798 -15.95708 -15.50033 -15.30930 -14.81227 -14.51579 -14.38181 -13.56217 -13.41028 -13.07688 -12.77094 -12.65208 -12.49968 -12.21970 -12.09340 -11.82476 -11.65662 -11.54023 -11.39220 -11.15149 -10.88925 -10.55513 -10.42095 -10.29305 -9.97770 -9.80445 -8.75882 -8.72432 -8.63713 -8.06812 -6.35443 -4.43775 1.91941 2.19263 2.70867 2.79147 3.11705 3.19979 3.23906 3.26968 3.41545 3.68268 4.23365 4.45879 4.69905 4.77344 4.85689 4.99403 5.10267 5.16300 5.25139 5.38312 5.53580 5.69162 5.71337 5.91247 5.98070 6.00895 6.35690 6.37337 6.45507 6.70296 6.77225 6.86923 7.14277 7.31692 7.52397 7.71932 7.74711 8.17282 8.35615 8.61747 9.23491 10.72698 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.023825 B = 0.003421 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.957923 B = 8182.677165 C = 8661.451550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C 0.034 3.966 3 O -0.322 6.322 4 C 0.065 3.935 5 C 0.070 3.930 6 O -0.349 6.349 7 C 0.552 3.448 8 O -0.532 6.532 9 C -0.319 4.319 10 C 0.082 3.918 11 N -0.297 5.297 12 N -0.311 5.311 13 C 0.251 3.749 14 C -0.544 4.544 15 H 0.066 0.934 16 C 0.068 3.932 17 N -0.889 5.889 18 Si 0.909 3.091 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.273 1.273 22 C 0.173 3.827 23 C -0.101 4.101 24 H 0.118 0.882 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.185 0.815 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.270 0.730 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.596 -17.352 -10.731 20.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.028 4.028 3 O -0.236 6.236 4 C -0.011 4.011 5 C -0.005 4.005 6 O -0.266 6.266 7 C 0.400 3.600 8 O -0.423 6.423 9 C -0.332 4.332 10 C -0.106 4.106 11 N -0.117 5.117 12 N -0.087 5.087 13 C 0.134 3.866 14 C -0.582 4.582 15 H 0.084 0.916 16 C -0.136 4.136 17 N -0.527 5.527 18 Si 0.736 3.264 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.198 1.198 22 C 0.034 3.966 23 C -0.159 4.159 24 H 0.136 0.864 25 H 0.122 0.878 26 H 0.132 0.868 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.202 0.798 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.353 -16.379 -9.583 19.025 hybrid contribution -0.299 0.119 -0.992 1.043 sum 1.053 -16.260 -10.575 19.425 Atomic orbital electron populations 1.23426 0.93779 1.02961 1.10121 1.22338 0.93680 0.87810 0.99019 1.86150 1.19113 1.29419 1.88938 1.22870 0.79533 0.96471 1.02204 1.22944 0.99988 0.91292 0.86247 1.86598 1.71932 1.28196 1.39899 1.20050 0.75401 0.78890 0.85667 1.90755 1.39096 1.68757 1.43645 1.18825 1.20049 0.96161 0.98175 1.23929 0.97071 0.98862 0.90706 1.77217 1.17102 0.93963 1.23377 1.49434 1.34655 1.12724 1.11871 1.19895 0.98916 0.74179 0.93631 1.21226 1.09448 0.98410 1.29092 0.91603 1.24924 0.96643 0.97716 0.94297 1.69905 1.33284 1.20195 1.29266 0.86365 0.81911 0.79343 0.78826 1.19833 1.20856 1.19808 1.21450 0.94053 0.93467 0.87584 1.20665 0.98006 0.98335 0.98856 0.86406 0.87789 0.86765 0.90262 0.91045 0.90246 0.89259 0.79820 0.92451 0.92291 0.92005 0.90199 0.88674 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -2.44 14.63 28.85 0.42 -2.02 16 2 C 0.03 0.31 10.36 28.85 0.30 0.61 16 3 O -0.32 -3.67 10.06 -22.27 -0.22 -3.90 16 4 C 0.06 0.54 6.42 37.16 0.24 0.78 16 5 C 0.07 0.76 5.85 37.16 0.22 0.98 16 6 O -0.35 -5.20 10.04 -43.43 -0.44 -5.63 16 7 C 0.55 9.63 7.95 34.41 0.27 9.91 16 8 O -0.53 -9.78 14.63 -19.28 -0.28 -10.06 16 9 C -0.32 -6.10 6.13 -105.08 -0.64 -6.75 16 10 C 0.08 1.53 11.87 -16.97 -0.20 1.33 16 11 N -0.30 -6.56 12.50 30.87 0.39 -6.18 16 12 N -0.31 -7.06 3.56 -57.77 -0.21 -7.27 16 13 C 0.25 6.20 5.78 -5.20 -0.03 6.17 16 14 C -0.54 -14.58 9.39 -34.44 -0.32 -14.91 16 15 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 16 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 17 N -0.89 -24.44 13.29 55.43 0.74 -23.70 16 18 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 C 0.17 3.52 7.01 -81.59 -0.57 2.95 16 23 C -0.10 -1.77 9.34 36.01 0.34 -1.43 16 24 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 25 H 0.10 1.09 8.06 -52.49 -0.42 0.67 16 26 H 0.11 0.69 8.01 -52.49 -0.42 0.27 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.18 2.78 8.06 -52.49 -0.42 2.35 16 32 H 0.06 1.39 7.62 -51.93 -0.40 1.00 16 33 H 0.06 1.55 8.14 -51.93 -0.42 1.12 16 34 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.09 1.63 6.51 -51.93 -0.34 1.29 16 37 H 0.09 1.58 7.70 -51.93 -0.40 1.19 16 LS Contribution 334.09 15.07 5.03 5.03 Total: -1.00 -30.98 334.09 -5.00 -35.98 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -4.90 Total: 0.65 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -0.08 Total: -0.65 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.92 Total: -37.14 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.94 Total: -19.60 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.98 -5.00 -35.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892909358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.124 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds