Wall clock time and date at job start Tue Mar 31 2020 02:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46932 * 2 1 4 4 C 1.35316 * 126.66155 * 90.29149 * 3 2 1 5 5 C 1.42271 * 103.92406 * 180.12943 * 4 3 2 6 6 C 1.48322 * 126.93987 * 179.91630 * 5 4 3 7 7 O 1.21501 * 120.00152 * 359.69734 * 6 5 4 8 8 N 1.34784 * 119.99893 * 179.70935 * 6 5 4 9 9 C 1.47014 * 125.64965 * 359.96749 * 8 6 5 10 10 C 1.54327 * 107.27187 * 178.98958 * 9 8 6 11 11 C 1.55149 * 102.94214 * 337.80814 * 10 9 8 12 12 O 1.42903 * 111.00594 * 277.43081 * 11 10 9 13 13 C 1.50694 * 111.00456 * 153.61700 * 11 10 9 14 14 H 1.07991 * 120.00193 * 3.17397 * 13 11 10 15 15 C 1.37884 * 119.99946 * 183.18304 * 13 11 10 16 16 N 1.31508 * 119.99961 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00010 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47073 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47251 * 119.99288 * 17 15 13 20 20 H 1.48497 * 109.47495 * 239.99680 * 17 15 13 21 21 C 1.47419 * 125.64596 * 180.02562 * 8 6 5 22 22 N 1.30990 * 106.11687 * 359.64546 * 5 4 3 23 23 O 1.20901 * 111.44352 * 0.22699 * 22 5 4 24 24 H 1.09001 * 109.47696 * 59.99363 * 1 2 3 25 25 H 1.09004 * 109.47502 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47166 * 299.99316 * 1 2 3 27 27 H 1.09005 * 109.46657 * 240.00821 * 2 1 3 28 28 H 1.08995 * 109.47299 * 120.00705 * 2 1 3 29 29 H 1.08002 * 128.03700 * 0.02562 * 4 3 2 30 30 H 1.08999 * 109.88292 * 59.56755 * 9 8 6 31 31 H 1.08998 * 110.01176 * 298.48101 * 9 8 6 32 32 H 1.09002 * 110.71297 * 219.44414 * 10 9 8 33 33 H 1.09000 * 110.86709 * 96.24207 * 10 9 8 34 34 H 0.96700 * 114.00311 * 180.02562 * 12 11 10 35 35 H 0.97001 * 119.99988 * 180.02562 * 16 15 13 36 36 H 1.09009 * 110.36844 * 85.24321 * 21 8 6 37 37 H 1.09002 * 110.37005 * 322.91821 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3068 2.1808 1.0855 5 6 2.7385 3.4198 0.5356 6 6 3.1660 4.6267 1.2844 7 8 3.1643 4.6200 2.4994 8 7 3.5560 5.7308 0.6171 9 6 3.6067 5.8752 -0.8451 10 6 4.0863 7.3105 -1.1475 11 6 3.7373 8.0755 0.1564 12 8 2.3661 8.4776 0.1630 13 6 4.6462 9.2624 0.3460 14 1 5.3799 9.5066 -0.4079 15 6 4.5413 10.0365 1.4822 16 7 3.6477 9.7393 2.4001 17 14 5.6684 11.5075 1.7176 18 1 6.5783 11.6257 0.5499 19 1 4.8523 12.7424 1.8368 20 1 6.4710 11.3234 2.9534 21 6 4.0037 6.9934 1.2325 22 7 2.6879 3.2776 -0.7656 23 8 2.2986 2.1756 -1.0749 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8901 27 1 1.8932 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.2171 1.9101 2.1272 30 1 2.6141 5.7192 -1.2676 31 1 4.3065 5.1538 -1.2671 32 1 3.5441 7.7274 -1.9962 33 1 5.1607 7.3304 -1.3305 34 1 2.1014 8.9598 0.9583 35 1 3.5736 10.2841 3.1992 36 1 5.0672 6.9452 1.4668 37 1 3.4253 7.2029 2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898086448.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:56 Heat of formation + Delta-G solvation = -24.932222 kcal Electronic energy + Delta-G solvation = -22093.138772 eV Core-core repulsion = 18645.868804 eV Total energy + Delta-G solvation = -3447.269968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.00463 -39.34968 -37.22554 -35.09204 -34.37158 -33.60940 -32.20850 -30.44912 -29.98786 -27.89667 -25.83907 -24.44807 -23.83067 -22.73248 -21.59911 -19.68839 -18.71377 -17.74627 -17.21700 -17.15505 -16.51898 -15.34349 -14.99912 -14.88863 -14.77800 -14.52268 -14.08852 -13.53652 -13.20249 -13.06767 -12.90712 -12.85569 -12.11567 -12.03938 -11.77964 -11.61196 -11.50270 -11.17998 -11.06569 -10.76106 -10.59300 -10.48761 -10.32398 -10.18529 -9.76232 -9.46507 -9.38550 -8.72076 -8.42281 -7.85462 -6.30970 -4.40936 1.26473 1.75699 2.92819 3.18176 3.27372 3.30801 3.37549 3.56266 4.13925 4.24619 4.42264 4.74211 4.86182 4.95572 5.00609 5.08218 5.29321 5.42167 5.47194 5.50085 5.67684 5.74224 5.82361 5.84557 5.91480 6.09834 6.25865 6.50742 6.72146 6.82523 6.91080 7.21954 7.31570 7.71798 7.96424 8.04672 8.12308 8.55526 8.63981 9.28649 9.39899 10.76187 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.041670 B = 0.003935 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.785138 B = 7113.987032 C = 7388.633221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.039 4.039 3 C -0.042 4.042 4 C -0.182 4.182 5 C -0.012 4.012 6 C 0.597 3.403 7 O -0.537 6.537 8 N -0.590 5.590 9 C 0.110 3.890 10 C -0.119 4.119 11 C 0.249 3.751 12 O -0.583 6.583 13 C -0.537 4.537 14 H 0.069 0.931 15 C 0.070 3.930 16 N -0.894 5.894 17 Si 0.905 3.095 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.282 1.282 21 C 0.094 3.906 22 N -0.327 5.327 23 O 0.116 5.884 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.178 0.822 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.384 0.616 35 H 0.271 0.729 36 H 0.065 0.935 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.552 -16.817 -4.988 17.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.077 4.077 3 C -0.105 4.105 4 C -0.204 4.204 5 C -0.172 4.172 6 C 0.382 3.618 7 O -0.414 6.414 8 N -0.322 5.322 9 C -0.013 4.013 10 C -0.157 4.157 11 C 0.208 3.792 12 O -0.392 6.392 13 C -0.576 4.576 14 H 0.087 0.913 15 C -0.133 4.133 16 N -0.533 5.533 17 Si 0.733 3.267 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.027 4.027 22 N -0.029 5.029 23 O 0.042 5.958 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.195 0.805 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.235 0.765 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.324 -16.231 -5.703 17.522 hybrid contribution 0.490 0.744 1.553 1.791 sum -2.834 -15.487 -4.149 16.282 Atomic orbital electron populations 1.21814 0.93490 1.02640 1.03083 1.20102 0.96644 0.86248 1.04746 1.24462 1.03095 0.97178 0.85754 1.22413 1.04889 0.91732 1.01363 1.23675 1.05554 0.97978 0.89944 1.16519 0.78723 0.80620 0.85954 1.90766 1.55866 1.82478 1.12288 1.48633 1.61853 1.13287 1.08405 1.22057 1.00893 0.98264 0.80118 1.22659 1.00845 0.92390 0.99758 1.19618 0.81333 0.90173 0.88070 1.86092 1.28046 1.77815 1.47267 1.21520 1.19282 1.11431 1.05345 0.91304 1.25106 0.95312 0.97759 0.95156 1.69658 1.34333 1.39595 1.09695 0.86321 0.80382 0.81805 0.78238 1.19542 1.20708 1.20743 1.23399 0.99111 0.80258 0.99884 1.74312 1.14065 0.98641 1.15858 1.84782 1.60128 1.17452 1.33479 0.91963 0.91287 0.91940 0.89268 0.88451 0.80471 0.91700 0.92280 0.90563 0.90354 0.76479 0.91925 0.91692 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.04 -0.26 6.50 -27.88 -0.18 -0.44 16 3 C -0.04 -0.47 6.73 -35.35 -0.24 -0.71 16 4 C -0.18 -2.52 10.92 -39.07 -0.43 -2.95 16 5 C -0.01 -0.22 7.03 -82.53 -0.58 -0.80 16 6 C 0.60 12.99 7.88 -12.11 -0.10 12.89 16 7 O -0.54 -13.00 17.21 5.36 0.09 -12.91 16 8 N -0.59 -13.12 3.33 -171.45 -0.57 -13.69 16 9 C 0.11 2.17 5.56 -3.07 -0.02 2.15 16 10 C -0.12 -2.47 6.13 -24.90 -0.15 -2.62 16 11 C 0.25 6.15 0.89 -89.63 -0.08 6.07 16 12 O -0.58 -15.23 13.19 -35.23 -0.46 -15.69 16 13 C -0.54 -14.04 8.26 -34.44 -0.28 -14.32 16 14 H 0.07 1.76 7.78 -52.49 -0.41 1.35 16 15 C 0.07 1.82 5.27 -17.82 -0.09 1.73 16 16 N -0.89 -23.88 10.68 55.43 0.59 -23.29 16 17 Si 0.91 20.33 29.54 -169.99 -5.02 15.31 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 C 0.09 2.33 5.51 -2.53 -0.01 2.31 16 22 N -0.33 -5.42 9.73 33.29 0.32 -5.10 16 23 O 0.12 1.58 11.18 17.25 0.19 1.77 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.18 2.15 8.06 -52.49 -0.42 1.73 16 30 H 0.06 1.28 7.69 -51.93 -0.40 0.88 16 31 H 0.06 1.06 7.79 -51.93 -0.40 0.66 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.08 1.52 8.02 -51.93 -0.42 1.11 16 34 H 0.38 10.28 7.18 45.56 0.33 10.61 16 35 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.06 1.62 8.03 -51.92 -0.42 1.20 16 37 H 0.09 2.40 7.48 -51.93 -0.39 2.01 16 LS Contribution 315.91 15.07 4.76 4.76 Total: -1.00 -30.27 315.91 -6.09 -36.36 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -4.20 Total: 9.73 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -1.79 Total: 2.75 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.35 Total: -42.08 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.18 Total: -26.83 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.27 -6.09 -36.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898086448.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.425 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds