Wall clock time and date at job start Tue Mar 31 2020 02:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46932 * 2 1 4 4 C 1.35316 * 126.66155 * 90.29149 * 3 2 1 5 5 C 1.42271 * 103.92406 * 180.12943 * 4 3 2 6 6 C 1.48322 * 126.93987 * 179.91630 * 5 4 3 7 7 O 1.21501 * 120.00152 * 359.69734 * 6 5 4 8 8 N 1.34784 * 119.99893 * 179.70935 * 6 5 4 9 9 C 1.47014 * 125.64965 * 359.96749 * 8 6 5 10 10 C 1.54327 * 107.27187 * 178.98958 * 9 8 6 11 11 C 1.55149 * 102.94214 * 337.80814 * 10 9 8 12 12 O 1.42903 * 111.00594 * 277.43081 * 11 10 9 13 13 C 1.50694 * 111.00456 * 153.61700 * 11 10 9 14 14 H 1.07991 * 120.00193 * 3.17397 * 13 11 10 15 15 C 1.37884 * 119.99946 * 183.18304 * 13 11 10 16 16 N 1.31508 * 119.99961 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00010 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47073 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47251 * 119.99288 * 17 15 13 20 20 H 1.48497 * 109.47495 * 239.99680 * 17 15 13 21 21 C 1.47419 * 125.64596 * 180.02562 * 8 6 5 22 22 N 1.30990 * 106.11687 * 359.64546 * 5 4 3 23 23 O 1.20901 * 111.44352 * 0.22699 * 22 5 4 24 24 H 1.09001 * 109.47696 * 59.99363 * 1 2 3 25 25 H 1.09004 * 109.47502 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47166 * 299.99316 * 1 2 3 27 27 H 1.09005 * 109.46657 * 240.00821 * 2 1 3 28 28 H 1.08995 * 109.47299 * 120.00705 * 2 1 3 29 29 H 1.08002 * 128.03700 * 0.02562 * 4 3 2 30 30 H 1.08999 * 109.88292 * 59.56755 * 9 8 6 31 31 H 1.08998 * 110.01176 * 298.48101 * 9 8 6 32 32 H 1.09002 * 110.71297 * 219.44414 * 10 9 8 33 33 H 1.09000 * 110.86709 * 96.24207 * 10 9 8 34 34 H 0.96700 * 114.00311 * 180.02562 * 12 11 10 35 35 H 0.97001 * 119.99988 * 180.02562 * 16 15 13 36 36 H 1.09009 * 110.36844 * 85.24321 * 21 8 6 37 37 H 1.09002 * 110.37005 * 322.91821 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3068 2.1808 1.0855 5 6 2.7385 3.4198 0.5356 6 6 3.1660 4.6267 1.2844 7 8 3.1643 4.6200 2.4994 8 7 3.5560 5.7308 0.6171 9 6 3.6067 5.8752 -0.8451 10 6 4.0863 7.3105 -1.1475 11 6 3.7373 8.0755 0.1564 12 8 2.3661 8.4776 0.1630 13 6 4.6462 9.2624 0.3460 14 1 5.3799 9.5066 -0.4079 15 6 4.5413 10.0365 1.4822 16 7 3.6477 9.7393 2.4001 17 14 5.6684 11.5075 1.7176 18 1 6.5783 11.6257 0.5499 19 1 4.8523 12.7424 1.8368 20 1 6.4710 11.3234 2.9534 21 6 4.0037 6.9934 1.2325 22 7 2.6879 3.2776 -0.7656 23 8 2.2986 2.1756 -1.0749 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8901 27 1 1.8932 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.2171 1.9101 2.1272 30 1 2.6141 5.7192 -1.2676 31 1 4.3065 5.1538 -1.2671 32 1 3.5441 7.7274 -1.9962 33 1 5.1607 7.3304 -1.3305 34 1 2.1014 8.9598 0.9583 35 1 3.5736 10.2841 3.1992 36 1 5.0672 6.9452 1.4668 37 1 3.4253 7.2029 2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898086448.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:55 Heat of formation + Delta-G solvation = -46.135415 kcal Electronic energy + Delta-G solvation = -22094.058211 eV Core-core repulsion = 18645.868804 eV Total energy + Delta-G solvation = -3448.189407 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -46.19938 -41.11036 -39.06362 -36.27455 -35.83773 -34.86822 -34.24300 -32.00497 -31.11871 -29.74441 -27.65988 -25.71667 -24.89453 -24.15095 -22.91953 -21.57702 -20.18156 -19.21515 -18.91242 -18.33195 -18.05009 -17.24644 -16.76480 -16.59645 -16.19382 -15.44541 -15.25437 -14.97651 -14.86343 -14.77077 -14.35556 -13.85307 -13.58982 -13.48689 -13.43973 -12.96498 -12.84859 -12.60341 -12.39667 -12.34275 -12.23768 -12.19185 -11.83022 -11.57115 -11.51553 -11.27297 -10.71082 -10.47232 -10.41825 -9.68918 -8.29519 -6.47397 0.01998 0.63168 1.40062 1.43413 1.54774 1.69349 1.96638 2.05337 2.36062 2.78525 2.96340 3.38563 3.69017 3.88221 3.94004 4.01052 4.13233 4.17192 4.27471 4.37586 4.46255 4.58763 4.63748 4.72336 4.90974 4.98223 4.98556 5.08467 5.14331 5.17008 5.29158 5.37630 5.42518 5.70478 5.97597 6.34958 6.61083 6.76105 7.04306 7.23648 7.31000 8.76584 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.041670 B = 0.003935 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.785138 B = 7113.987032 C = 7388.633221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.037 4.037 3 C -0.012 4.012 4 C -0.194 4.194 5 C -0.045 4.045 6 C 0.591 3.409 7 O -0.573 6.573 8 N -0.599 5.599 9 C 0.119 3.881 10 C -0.112 4.112 11 C 0.234 3.766 12 O -0.590 6.590 13 C -0.556 4.556 14 H 0.072 0.928 15 C 0.025 3.975 16 N -0.917 5.917 17 Si 0.969 3.031 18 H -0.263 1.263 19 H -0.279 1.279 20 H -0.282 1.282 21 C 0.107 3.893 22 N -0.341 5.341 23 O 0.133 5.867 24 H 0.054 0.946 25 H 0.093 0.907 26 H 0.051 0.949 27 H 0.114 0.886 28 H 0.121 0.879 29 H 0.190 0.810 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.377 0.623 35 H 0.271 0.729 36 H 0.053 0.947 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.394 -18.794 -6.460 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.075 4.075 3 C -0.075 4.075 4 C -0.217 4.217 5 C -0.202 4.202 6 C 0.379 3.621 7 O -0.453 6.453 8 N -0.330 5.330 9 C -0.004 4.004 10 C -0.150 4.150 11 C 0.193 3.807 12 O -0.398 6.398 13 C -0.594 4.594 14 H 0.091 0.909 15 C -0.176 4.176 16 N -0.557 5.557 17 Si 0.794 3.206 18 H -0.187 1.187 19 H -0.205 1.205 20 H -0.207 1.207 21 C -0.015 4.015 22 N -0.039 5.039 23 O 0.054 5.946 24 H 0.073 0.927 25 H 0.112 0.888 26 H 0.070 0.930 27 H 0.132 0.868 28 H 0.139 0.861 29 H 0.207 0.793 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.227 0.773 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.158 -18.198 -7.204 19.826 hybrid contribution 0.372 1.228 1.986 2.364 sum -2.786 -16.971 -5.218 17.972 Atomic orbital electron populations 1.21836 0.92957 1.04031 1.02227 1.20448 0.96825 0.83061 1.07154 1.25249 1.00203 0.98213 0.83828 1.22623 1.05628 0.90624 1.02837 1.23286 1.08403 0.97730 0.90812 1.17064 0.77720 0.81432 0.85903 1.90723 1.57225 1.83381 1.13974 1.48696 1.62160 1.12781 1.09361 1.22078 1.01512 0.98151 0.78614 1.22674 1.02009 0.92230 0.98068 1.19857 0.80460 0.90235 0.90115 1.86083 1.29161 1.77760 1.46816 1.21805 1.19724 1.12180 1.05690 0.90950 1.25878 0.96570 1.00257 0.94854 1.69773 1.35470 1.40447 1.09985 0.85328 0.78575 0.78498 0.78159 1.18700 1.20468 1.20743 1.22997 0.97670 0.82032 0.98787 1.74285 1.14449 1.00015 1.15163 1.84750 1.58934 1.16756 1.34126 0.92721 0.88814 0.92970 0.86795 0.86093 0.79268 0.91616 0.90042 0.89476 0.88808 0.77335 0.91918 0.92823 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.89 71.98 0.71 -0.63 16 2 C -0.04 -0.33 6.50 29.85 0.19 -0.14 16 3 C -0.01 -0.23 6.73 25.01 0.17 -0.06 16 4 C -0.19 -5.14 10.92 22.60 0.25 -4.89 16 5 C -0.05 -1.61 7.03 42.96 0.30 -1.30 16 6 C 0.59 26.46 7.88 86.93 0.68 27.15 16 7 O -0.57 -28.98 17.21 -3.72 -0.06 -29.04 16 8 N -0.60 -27.22 3.33 -814.65 -2.71 -29.93 16 9 C 0.12 4.62 5.56 86.73 0.48 5.10 16 10 C -0.11 -4.59 6.13 31.78 0.19 -4.39 16 11 C 0.23 11.75 0.89 -10.15 -0.01 11.74 16 12 O -0.59 -31.60 13.19 -148.98 -1.96 -33.56 16 13 C -0.56 -29.25 8.26 25.60 0.21 -29.04 16 14 H 0.07 3.67 7.78 -2.92 -0.02 3.65 16 15 C 0.03 1.33 5.27 84.66 0.45 1.77 16 16 N -0.92 -50.38 10.68 21.45 0.23 -50.16 16 17 Si 0.97 41.86 29.54 68.60 2.03 43.89 16 18 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 19 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 21 C 0.11 5.50 5.51 86.86 0.48 5.98 16 22 N -0.34 -10.85 9.73 -49.51 -0.48 -11.33 16 23 O 0.13 3.29 11.18 71.92 0.80 4.09 16 24 H 0.05 0.57 8.14 -2.39 -0.02 0.56 16 25 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 26 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.19 4.40 8.06 -2.91 -0.02 4.37 16 30 H 0.07 2.55 7.69 -2.39 -0.02 2.53 16 31 H 0.08 2.81 7.79 -2.39 -0.02 2.79 16 32 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 33 H 0.09 3.52 8.02 -2.39 -0.02 3.50 16 34 H 0.38 21.01 7.18 -74.06 -0.53 20.48 16 35 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 36 H 0.05 2.80 8.03 -2.38 -0.02 2.78 16 37 H 0.05 2.95 7.48 -2.39 -0.02 2.94 16 Total: -1.00 -67.57 315.91 2.51 -65.05 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.56 Total: 29.70 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 4.11 Total: 11.28 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -2.96 Total: -91.42 kcal Atomic # 8 Polarization: -57.29 SS G_CDS: -1.22 Total: -58.51 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -67.57 2.51 -65.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898086448.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.918 kcal (2) G-P(sol) polarization free energy of solvation -67.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds